Select genomic region:
Overview
15.1
20.1
35.1
54.1
72.1
99.1

### Identified primary metabolite regions

c00015_gnlPro.. (original name was: gnl|Prokka|IIKKHECN_15)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 15.1 | Rnf_complex | E-MGC | 1 | 18,641 | Rnf complex C. sporogenes | RNF | 100%

c00020_gnlPro.. (original name was: gnl|Prokka|IIKKHECN_20)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 20.1 | Arginine2putrescine,Putrescine2spermidine | Aliphatic_amine | 1,423 | 32,471 | Putrescine2spermidine E. rectale | SPRM | 100%

c00035_gnlPro.. (original name was: gnl|Prokka|IIKKHECN_35)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 35.1 | porA | SCFA | 1 | 14,906 | Ethanolamine degradation S. typhimurium | EUT | 15%

c00054_gnlPro.. (original name was: gnl|Prokka|IIKKHECN_54)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 54.1 | Pyruvate2acetate-formate | SCFA | 1 | 17,484 | Pyruvate to acetate and formate C. acetobutylicum | PFL_acetate | 100%

c00072_gnlPro.. (original name was: gnl|Prokka|IIKKHECN_72)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 72.1 | succinate2propionate | SCFA | 1 | 12,772 | Succinate to propionate B. theta | PRO | 33%

c00099_gnlPro.. (original name was: gnl|Prokka|IIKKHECN_99)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 99.1 | acetate2butyrate | SCFA | 1 | 7,639 | Acetate to butyrate C. sporogenes | BUT | 83%

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 15.1 | Rnf_complex | E-MGC | 1 | 18,641 | Rnf complex C. sporogenes | RNF | 100%
Region 20.1 | Arginine2putrescine,Putrescine2spermidine | Aliphatic_amine | 1,423 | 32,471 | Putrescine2spermidine E. rectale | SPRM | 100%
Region 35.1 | porA | SCFA | 1 | 14,906 | Ethanolamine degradation S. typhimurium | EUT | 15%
Region 54.1 | Pyruvate2acetate-formate | SCFA | 1 | 17,484 | Pyruvate to acetate and formate C. acetobutylicum | PFL_acetate | 100%
Region 72.1 | succinate2propionate | SCFA | 1 | 12,772 | Succinate to propionate B. theta | PRO | 33%
Region 99.1 | acetate2butyrate | SCFA | 1 | 7,639 | Acetate to butyrate C. sporogenes | BUT | 83%

No primary metabolite regions were found in these records:
  c00001_gnlPro.. (original name was: gnl|Prokka|IIKKHECN_1)
  c00002_gnlPro.. (original name was: gnl|Prokka|IIKKHECN_2)
  c00003_gnlPro.. (original name was: gnl|Prokka|IIKKHECN_3)
  c00004_gnlPro.. (original name was: gnl|Prokka|IIKKHECN_4)
  c00005_gnlPro.. (original name was: gnl|Prokka|IIKKHECN_5)
  c00006_gnlPro.. (original name was: gnl|Prokka|IIKKHECN_6)
  c00007_gnlPro.. (original name was: gnl|Prokka|IIKKHECN_7)
  c00008_gnlPro.. (original name was: gnl|Prokka|IIKKHECN_8)
  c00009_gnlPro.. (original name was: gnl|Prokka|IIKKHECN_9)
  c00010_gnlPro.. (original name was: gnl|Prokka|IIKKHECN_10)
  c00011_gnlPro.. (original name was: gnl|Prokka|IIKKHECN_11)
  c00012_gnlPro.. (original name was: gnl|Prokka|IIKKHECN_12)
  c00013_gnlPro.. (original name was: gnl|Prokka|IIKKHECN_13)
  c00014_gnlPro.. (original name was: gnl|Prokka|IIKKHECN_14)
  c00016_gnlPro.. (original name was: gnl|Prokka|IIKKHECN_16)
  c00017_gnlPro.. (original name was: gnl|Prokka|IIKKHECN_17)
  c00018_gnlPro.. (original name was: gnl|Prokka|IIKKHECN_18)
  c00019_gnlPro.. (original name was: gnl|Prokka|IIKKHECN_19)
  c00021_gnlPro.. (original name was: gnl|Prokka|IIKKHECN_21)
  c00022_gnlPro.. (original name was: gnl|Prokka|IIKKHECN_22)
  c00023_gnlPro.. (original name was: gnl|Prokka|IIKKHECN_23)
  c00024_gnlPro.. (original name was: gnl|Prokka|IIKKHECN_24)
  c00025_gnlPro.. (original name was: gnl|Prokka|IIKKHECN_25)
  c00026_gnlPro.. (original name was: gnl|Prokka|IIKKHECN_26)
  c00027_gnlPro.. (original name was: gnl|Prokka|IIKKHECN_27)
  c00028_gnlPro.. (original name was: gnl|Prokka|IIKKHECN_28)
  c00029_gnlPro.. (original name was: gnl|Prokka|IIKKHECN_29)
  c00030_gnlPro.. (original name was: gnl|Prokka|IIKKHECN_30)
  c00031_gnlPro.. (original name was: gnl|Prokka|IIKKHECN_31)
  c00032_gnlPro.. (original name was: gnl|Prokka|IIKKHECN_32)
  c00033_gnlPro.. (original name was: gnl|Prokka|IIKKHECN_33)
  c00034_gnlPro.. (original name was: gnl|Prokka|IIKKHECN_34)
  c00036_gnlPro.. (original name was: gnl|Prokka|IIKKHECN_36)
  c00037_gnlPro.. (original name was: gnl|Prokka|IIKKHECN_37)
  c00038_gnlPro.. (original name was: gnl|Prokka|IIKKHECN_38)
  c00039_gnlPro.. (original name was: gnl|Prokka|IIKKHECN_39)
  c00040_gnlPro.. (original name was: gnl|Prokka|IIKKHECN_40)
  c00041_gnlPro.. (original name was: gnl|Prokka|IIKKHECN_41)
  c00042_gnlPro.. (original name was: gnl|Prokka|IIKKHECN_42)
  c00043_gnlPro.. (original name was: gnl|Prokka|IIKKHECN_43)
  c00044_gnlPro.. (original name was: gnl|Prokka|IIKKHECN_44)
  c00045_gnlPro.. (original name was: gnl|Prokka|IIKKHECN_45)
  c00046_gnlPro.. (original name was: gnl|Prokka|IIKKHECN_46)
  c00047_gnlPro.. (original name was: gnl|Prokka|IIKKHECN_47)
  c00048_gnlPro.. (original name was: gnl|Prokka|IIKKHECN_48)
  c00049_gnlPro.. (original name was: gnl|Prokka|IIKKHECN_49)
  c00050_gnlPro.. (original name was: gnl|Prokka|IIKKHECN_50)
  c00051_gnlPro.. (original name was: gnl|Prokka|IIKKHECN_51)
  c00052_gnlPro.. (original name was: gnl|Prokka|IIKKHECN_52)
  c00053_gnlPro.. (original name was: gnl|Prokka|IIKKHECN_53)
  c00055_gnlPro.. (original name was: gnl|Prokka|IIKKHECN_55)
  c00056_gnlPro.. (original name was: gnl|Prokka|IIKKHECN_56)
  c00057_gnlPro.. (original name was: gnl|Prokka|IIKKHECN_57)
  c00058_gnlPro.. (original name was: gnl|Prokka|IIKKHECN_58)
  c00059_gnlPro.. (original name was: gnl|Prokka|IIKKHECN_59)
  c00060_gnlPro.. (original name was: gnl|Prokka|IIKKHECN_60)
  c00061_gnlPro.. (original name was: gnl|Prokka|IIKKHECN_61)
  c00062_gnlPro.. (original name was: gnl|Prokka|IIKKHECN_62)
  c00063_gnlPro.. (original name was: gnl|Prokka|IIKKHECN_63)
  c00064_gnlPro.. (original name was: gnl|Prokka|IIKKHECN_64)
  c00065_gnlPro.. (original name was: gnl|Prokka|IIKKHECN_65)
  c00066_gnlPro.. (original name was: gnl|Prokka|IIKKHECN_66)
  c00067_gnlPro.. (original name was: gnl|Prokka|IIKKHECN_67)
  c00068_gnlPro.. (original name was: gnl|Prokka|IIKKHECN_68)
  c00069_gnlPro.. (original name was: gnl|Prokka|IIKKHECN_69)
  c00070_gnlPro.. (original name was: gnl|Prokka|IIKKHECN_70)
  c00071_gnlPro.. (original name was: gnl|Prokka|IIKKHECN_71)
  c00073_gnlPro.. (original name was: gnl|Prokka|IIKKHECN_73)
  c00074_gnlPro.. (original name was: gnl|Prokka|IIKKHECN_74)
  c00075_gnlPro.. (original name was: gnl|Prokka|IIKKHECN_75)
  c00076_gnlPro.. (original name was: gnl|Prokka|IIKKHECN_76)
  c00077_gnlPro.. (original name was: gnl|Prokka|IIKKHECN_77)
  c00078_gnlPro.. (original name was: gnl|Prokka|IIKKHECN_78)
  c00079_gnlPro.. (original name was: gnl|Prokka|IIKKHECN_79)
  c00080_gnlPro.. (original name was: gnl|Prokka|IIKKHECN_80)
  c00081_gnlPro.. (original name was: gnl|Prokka|IIKKHECN_81)
  c00082_gnlPro.. (original name was: gnl|Prokka|IIKKHECN_82)
  c00083_gnlPro.. (original name was: gnl|Prokka|IIKKHECN_83)
  c00084_gnlPro.. (original name was: gnl|Prokka|IIKKHECN_84)
  c00085_gnlPro.. (original name was: gnl|Prokka|IIKKHECN_85)
  c00086_gnlPro.. (original name was: gnl|Prokka|IIKKHECN_86)
  c00087_gnlPro.. (original name was: gnl|Prokka|IIKKHECN_87)
  c00088_gnlPro.. (original name was: gnl|Prokka|IIKKHECN_88)
  c00089_gnlPro.. (original name was: gnl|Prokka|IIKKHECN_89)
  c00090_gnlPro.. (original name was: gnl|Prokka|IIKKHECN_90)
  c00091_gnlPro.. (original name was: gnl|Prokka|IIKKHECN_91)
  c00092_gnlPro.. (original name was: gnl|Prokka|IIKKHECN_92)
  c00093_gnlPro.. (original name was: gnl|Prokka|IIKKHECN_93)
  c00094_gnlPro.. (original name was: gnl|Prokka|IIKKHECN_94)
  c00095_gnlPro.. (original name was: gnl|Prokka|IIKKHECN_95)
  c00096_gnlPro.. (original name was: gnl|Prokka|IIKKHECN_96)
  c00097_gnlPro.. (original name was: gnl|Prokka|IIKKHECN_97)
  c00098_gnlPro.. (original name was: gnl|Prokka|IIKKHECN_98)
  c00100_gnlPro.. (original name was: gnl|Prokka|IIKKHECN_100)
  c00101_gnlPro.. (original name was: gnl|Prokka|IIKKHECN_101)
  c00102_gnlPro.. (original name was: gnl|Prokka|IIKKHECN_102)
  c00103_gnlPro.. (original name was: gnl|Prokka|IIKKHECN_103)
  c00104_gnlPro.. (original name was: gnl|Prokka|IIKKHECN_104)
  c00105_gnlPro.. (original name was: gnl|Prokka|IIKKHECN_105)
  c00106_gnlPro.. (original name was: gnl|Prokka|IIKKHECN_106)
  c00107_gnlPro.. (original name was: gnl|Prokka|IIKKHECN_107)
  c00108_gnlPro.. (original name was: gnl|Prokka|IIKKHECN_108)
  c00109_gnlPro.. (original name was: gnl|Prokka|IIKKHECN_109)
  c00110_gnlPro.. (original name was: gnl|Prokka|IIKKHECN_110)
  c00111_gnlPro.. (original name was: gnl|Prokka|IIKKHECN_111)
  c00112_gnlPro.. (original name was: gnl|Prokka|IIKKHECN_112)
  c00113_gnlPro.. (original name was: gnl|Prokka|IIKKHECN_113)
  c00114_gnlPro.. (original name was: gnl|Prokka|IIKKHECN_114)
  c00115_gnlPro.. (original name was: gnl|Prokka|IIKKHECN_115)
  c00116_gnlPro.. (original name was: gnl|Prokka|IIKKHECN_116)
  c00117_gnlPro.. (original name was: gnl|Prokka|IIKKHECN_117)
  c00118_gnlPro.. (original name was: gnl|Prokka|IIKKHECN_118)
  c00119_gnlPro.. (original name was: gnl|Prokka|IIKKHECN_119)
  c00120_gnlPro.. (original name was: gnl|Prokka|IIKKHECN_120)
  c00121_gnlPro.. (original name was: gnl|Prokka|IIKKHECN_121)
  c00122_gnlPro.. (original name was: gnl|Prokka|IIKKHECN_122)
  c00123_gnlPro.. (original name was: gnl|Prokka|IIKKHECN_123)
  c00124_gnlPro.. (original name was: gnl|Prokka|IIKKHECN_124)
  c00125_gnlPro.. (original name was: gnl|Prokka|IIKKHECN_125)
  c00126_gnlPro.. (original name was: gnl|Prokka|IIKKHECN_126)
  c00127_gnlPro.. (original name was: gnl|Prokka|IIKKHECN_127)
  c00128_gnlPro.. (original name was: gnl|Prokka|IIKKHECN_128)
  c00129_gnlPro.. (original name was: gnl|Prokka|IIKKHECN_129)
  c00130_gnlPro.. (original name was: gnl|Prokka|IIKKHECN_130)
  c00131_gnlPro.. (original name was: gnl|Prokka|IIKKHECN_131)
  c00132_gnlPro.. (original name was: gnl|Prokka|IIKKHECN_132)
  c00133_gnlPro.. (original name was: gnl|Prokka|IIKKHECN_133)
  c00134_gnlPro.. (original name was: gnl|Prokka|IIKKHECN_134)
  c00135_gnlPro.. (original name was: gnl|Prokka|IIKKHECN_135)
  c00136_gnlPro.. (original name was: gnl|Prokka|IIKKHECN_136)
  c00137_gnlPro.. (original name was: gnl|Prokka|IIKKHECN_137)
  c00138_gnlPro.. (original name was: gnl|Prokka|IIKKHECN_138)
  c00139_gnlPro.. (original name was: gnl|Prokka|IIKKHECN_139)
  c00140_gnlPro.. (original name was: gnl|Prokka|IIKKHECN_140)

Compact view
c00015_gnlPro.. - Region 1 - Rnf_complex
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 1 - 18,641 nt. (total: 18,641 nt) Show pHMM detection rules used
Region on contig edge.
Rnf_complex: (Complex1_51K and minimum(5, [FMN_bind, FeS, Fer4, Fer4_9, NQR2_RnfD_RnfE, Rnf-Nqr, RnfC_N, SLBB]))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
c00020_gnlPro.. - Region 1 - Arginine2putrescine,Putrescine2spermidine
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 1,423 - 32,471 nt. (total: 31,049 nt) Show pHMM detection rules used
Arginine2putrescine: (minimum(3, [AdoMet_dc, Amidinotransf, Arginase, OKR_DC_1, OKR_DC_1_7_arginine, OTCace]) or ((OKR_DC_1_5_ornithine or OKR_DC_1 or Orn_Arg_deC_N) and minimum(1, [Arginase, OTCace, OTCace_N, PAD_porph])))
Putrescine2spermidine: (minimum(2, [AdoMet_dc, Spermine_synt_N, Spermine_synth]) or (Orn_DAP_Arg_deC and Sacchrp_dh_C))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
c00035_gnlPro.. - Region 1 - porA
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 1 - 14,906 nt. (total: 14,906 nt) Show pHMM detection rules used
Region on contig edge.
porA: (Fer4_7 and TPP_enzyme_C and POR and POR_N and PFOR_II and not (EKR or Fer4_16))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
c00054_gnlPro.. - Region 1 - Pyruvate2acetate-formate
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 1 - 17,484 nt. (total: 17,484 nt) Show pHMM detection rules used
Region on contig edge.
Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
c00072_gnlPro.. - Region 1 - succinate2propionate
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 1 - 12,772 nt. (total: 12,772 nt) Show pHMM detection rules used
Region on contig edge.
succinate2propionate: (minimum(4, [AcetylCoA_hyd_C, AcetylCoA_hydro, B12-binding, Biotin_lipoyl, Glyoxalase_4, HMGL-like, MM_CoA_mutase, MeaB, OAD_beta, OAD_gamma, PYC_OADA]) and minimum(1, [CT_Btheta, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, CT_Vparvula]) and not Cytidylate_kin)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
c00099_gnlPro.. - Region 1 - acetate2butyrate
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 1 - 7,639 nt. (total: 7,639 nt) Show pHMM detection rules used
Region on contig edge.
acetate2butyrate: (not (POR or POR_N or PFOR_II) and minimum(4, [Acyl-CoA_dh_1, Acyl-CoA_dh_2, ECH_2, ETF, ETF_alpha, HCDH_N, Thiolase_N, ketoacyl-synt]) and HCDH and minimum(1, [EC1_2-faecali, ECH1_Enoyl_CoA_DH1, ECH1_Enoyl_CoA_DH2, ECH1_Enoyl_CoA_DH3, ECH1_Enoyl_CoA_DH4, Thiolase_C]))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.