Rank Genome ID Species Strain BioSample ID Date Location Host Allelic distance ARGs VFs PGs PPRS 1 GCA_036807045.1 Parabacteroides merdae CTOTU30069 SAMN28749740 - - - 0 0 0 0 0.00 2 GCA_014870605.1 Parabacteroides merdae COPD090 SAMN12905037 2015-04/2016-09 Australia Homo sapiens 479 0 0 1 1.00 3 GCA_036552125.1 Parabacteroides merdae DOME_MAG_8922 SAMN38021852 - USA Homo sapiens 596 0 0 1 1.00 4 GCA_036837885.1 Parabacteroides merdae CTOTU13359 SAMN28751012 - - - 635 0 0 1 1.00 5 GCA_022735225.1 Parabacteroides merdae Map_7_009 SAMN20302021 2015-08-24 Mozambique Homo sapiens 642 0 0 1 1.00 6 GCA_959019525.1 Parabacteroides merdae SRR20881974_bin.1_MetaWRAP_v1.3_MAG SAMEA114095515 2019-05-01 USA - 653 0 0 1 1.00 7 GCA_022783065.1 Parabacteroides merdae SUG879 SAMN26526103 2019 Canada Sus scrofa domesticus 670 2 0 1 2.24 8 GCA_015555255.1 Parabacteroides merdae D52t1_170925_B4 SAMN15532560 2017-09-25 USA Homo sapiens 692 0 0 1 1.00 9 GCA_028326765.1 Parabacteroides merdae D52st1_G3_D52t1_170925 SAMN31322796 2017-09-25 USA Homo sapiens 692 0 0 1 1.00 10 GCA_028328455.1 Parabacteroides merdae D52st1_D10_D52t1_170925 SAMN31322795 2017-09-25 USA Homo sapiens 692 0 0 1 1.00 11 GCA_027693525.1 Parabacteroides merdae OF25-24MHA SAMN31809681 2014-02-01 China Homo sapiens 787 4 0 1 4.12 12 GCA_036837845.1 Parabacteroides merdae CTOTU13337 SAMN28751104 - - - 795 0 0 0 0.00 13 GCA_027686665.1 Parabacteroides merdae AF101-95 SAMN31807787 2014-02-01 China Homo sapiens 819 5 0 1 5.10 14 GCA_027686805.1 Parabacteroides merdae AF101-58 SAMN31807779 2014-02-01 China Homo sapiens 819 5 0 1 5.10 15 GCA_022720235.1 Parabacteroides merdae CHE518_007 SAMN20300850 - USA Homo sapiens 820 1 5 2 5.48 16 GCA_958404825.1 Parabacteroides merdae ERR10960871_bin.1_MetaWRAP_v1.3_MAG SAMEA114061391 2018 Kenya - 820 0 0 1 1.00 17 GCA_022719835.1 Parabacteroides merdae CHE524_005 SAMN20300869 - USA Homo sapiens 821 0 0 1 1.00 18 GCA_934852545.1 Parabacteroides merdae MTG234_bin.63.fa SAMEA13566805 - - - 822 1 0 1 1.41 19 GCA_947507315.1 Parabacteroides merdae SRR13753901_bin.1_metawrap_v1.3_MAG SAMEA112181798 2019-07-02 USA - 825 0 0 1 1.00 20 GCA_022746615.1 Parabacteroides merdae Map_129_021 SAMN20301217 2017-10-22 Mozambique Homo sapiens 826 0 0 1 1.00 21 GCA_934875805.1 Parabacteroides merdae MTG247_bin.13.fa SAMEA13567497 - - - 826 1 0 1 1.41 22 GCA_015547975.1 Parabacteroides merdae D54t1_190329_G1 SAMN15532705 2019-03-29 USA Homo sapiens 827 2 0 1 2.24 23 GCA_028328345.1 Parabacteroides merdae D54st1_H2_D54t1_190329 SAMN31322801 2019-03-29 USA Homo sapiens 827 2 0 1 2.24 24 GCA_934841295.1 Parabacteroides merdae MTG233_bin.35.fa SAMEA13566726 - - - 827 1 0 1 1.41 25 GCA_934841555.1 Parabacteroides merdae MTG232_bin.14.fa SAMEA13566651 - - - 827 1 0 1 1.41 26 GCA_934852715.1 Parabacteroides merdae MTG235_bin.14.fa SAMEA13566824 - - - 827 0 0 1 1.00 27 GCA_934854775.1 Parabacteroides merdae MTG237_bin.39.fa SAMEA13566987 - - - 827 1 0 1 1.41 28 GCA_934864295.1 Parabacteroides merdae MTG236_bin.17.fa SAMEA13566899 - - - 827 1 0 1 1.41 29 GCA_934871325.1 Parabacteroides merdae MTG240_bin.23.fa SAMEA13567126 - - - 827 0 0 1 1.00 30 GCA_934872915.1 Parabacteroides merdae MTG246_bin.22.fa SAMEA13567447 - - - 827 0 0 1 1.00 31 GCA_934876355.1 Parabacteroides merdae MTG239_bin.6.fa SAMEA13567058 - - - 827 1 0 1 1.41 32 GCA_934883205.1 Parabacteroides merdae MTG248_bin.24.fa SAMEA13567572 - - - 827 0 0 1 1.00 33 GCA_028326635.1 Parabacteroides merdae D54st1_C9_D54t1_190329 SAMN31322798 2019-03-29 USA Homo sapiens 828 2 0 1 2.24 34 GCA_028328395.1 Parabacteroides merdae D54st1_G7_D54t1_190329 SAMN31322800 2019-03-29 USA Homo sapiens 828 2 0 1 2.24 35 GCA_028328425.1 Parabacteroides merdae D54st1_A3_D54t1_190329 SAMN31322797 2019-03-29 USA Homo sapiens 828 2 0 1 2.24 36 GCA_934872035.1 Parabacteroides merdae MTG238_bin.2.fa SAMEA13566995 - - - 829 0 0 1 1.00 37 GCA_036849335.1 Parabacteroides merdae CTOTU30651 SAMN28751812 - - - 830 0 0 1 1.00 38 GCA_028328385.1 Parabacteroides merdae 1028st1_A4_1028SCRN_200821 SAMN31322781 2020-08-21 USA Homo sapiens 831 1 0 1 1.41 39 GCA_015558865.1 Parabacteroides merdae 1001136B_160425_B1 SAMN15533221 2016-04-25 USA Homo sapiens 835 4 0 1 4.12 40 GCA_021411685.1 Parabacteroides merdae BJH_172 SAMN20148139 - USA Homo sapiens 837 3 0 1 3.16 41 GCA_015553045.1 Parabacteroides merdae D53t1_180928_D7 SAMN15533003 2018-09-28 USA Homo sapiens 839 1 0 1 1.41 42 GCA_948465985.1 Parabacteroides merdae SRR17684618_bin.62_metawrap_v1.3_MAG SAMEA112353645 2021-01-01 Canada - 839 0 0 1 1.00 43 GCA_003438825.1 Parabacteroides merdae OM06-16AC SAMN09736819 2013-12-01 China Homo sapiens 842 5 0 1 5.10 44 GCA_015558445.1 Parabacteroides merdae BSD2780120875b_170604_B5 SAMN15532601 2017-06-04 USA Homo sapiens 842 4 0 1 4.12 45 GCA_028326715.1 Parabacteroides merdae BSD2780120875st1_C2_BSD2780120875_150330 SAMN31322789 2015-03-30 USA Homo sapiens 842 4 0 1 4.12 46 GCA_028326955.1 Parabacteroides merdae BSD2780120875st1_D1_BSD2780120875b_170604 SAMN31322790 2017-06-04 USA Homo sapiens 842 4 0 1 4.12 47 GCA_034171025.1 Parabacteroides merdae SUG3465 SAMN37949450 2020 Canada swine 849 0 0 1 1.00 48 GCA_022733635.1 Parabacteroides merdae Map_8_012 SAMN20302118 2016-09-19 Mozambique Homo sapiens 850 0 0 1 1.00 49 GCA_947071195.1 Parabacteroides merdae SRR13840124_bin.4_metawrap_v1.3_MAG SAMEA111477099 - USA - 851 0 0 0 0.00 50 GCA_958432745.1 Parabacteroides merdae SRR17382092_bin.15_MetaWRAP_v1.3_MAG SAMEA114066320 2019-12 - - 851 0 0 1 1.00 51 GCA_018784105.1 Parabacteroides merdae MCC685 SAMN12147421 - Ireland Homo sapiens 852 1 0 1 1.41 52 GCA_020563655.1 Parabacteroides merdae DFI.1.110 SAMN22167311 - USA Homo sapiens 853 2 0 1 2.24 53 GCA_022137325.1 Parabacteroides merdae DFI.1.88 SAMN24725983 - USA Homo sapiens 853 2 0 1 2.24 54 GCA_022138085.1 Parabacteroides merdae DFI.1.192 SAMN24725962 - USA Homo sapiens 853 2 0 1 2.24 55 GCA_024463475.1 Parabacteroides merdae DFI.1.92 SAMN28944483 - USA Homo sapiens 853 2 0 1 2.24 56 GCA_959026335.1 Parabacteroides merdae SRR13494520_bin.54_MetaWRAP_v1.3_MAG SAMEA114096697 2018-01-17 USA - 853 0 0 1 1.00 57 GCA_005844535.1 Parabacteroides merdae 1001175st1_A1 SAMN10863250 2016-03-14 USA Homo sapiens 854 6 0 1 6.08 58 GCA_015552245.1 Parabacteroides merdae 1001175B_160314_A1 SAMN15533086 2016-03-14 USA Homo sapiens 854 6 0 1 6.08 59 GCA_009719515.1 Parabacteroides merdae BIOML-A28 SAMN11946264 2016-02-19 USA Homo sapiens 856 4 0 1 4.12 60 GCA_009719555.1 Parabacteroides merdae BIOML-A29 SAMN11946265 2016-02-19 USA Homo sapiens 856 4 0 1 4.12 61 GCA_022731965.1 Parabacteroides merdae Map_89_018 SAMN20302200 2016-03-10 Mozambique Homo sapiens 856 0 0 1 1.00 62 GCA_009719605.1 Parabacteroides merdae BIOML-A27 SAMN11946263 2016-02-19 USA Homo sapiens 858 4 0 1 4.12 63 GCA_958410745.1 Parabacteroides merdae ERR9322429_bin.14_MetaWRAP_v1.3_MAG SAMEA114060956 - - - 858 0 0 1 1.00 64 GCA_028328355.1 Parabacteroides merdae RTP21484st1_E1_RTP21484_190118 SAMN31322803 2019-01-18 USA Homo sapiens 859 3 0 1 3.16 65 GCA_028328305.1 Parabacteroides merdae RTP21484st1_A7_RTP21484_190118 SAMN31322802 2019-01-18 USA Homo sapiens 860 3 0 1 3.16 66 GCA_009677855.1 Parabacteroides merdae BIOML-A1 SAMN11946237 2015-04-01 USA Homo sapiens 861 2 0 1 2.24 67 GCA_009719915.1 Parabacteroides merdae BIOML-A9 SAMN11946245 2015-04-01 USA Homo sapiens 861 2 0 1 2.24 68 GCA_009719945.1 Parabacteroides merdae BIOML-A7 SAMN11946243 2015-04-01 USA Homo sapiens 861 2 0 1 2.24 69 GCA_009719965.1 Parabacteroides merdae BIOML-A5 SAMN11946241 2015-04-01 USA Homo sapiens 861 2 0 1 2.24 70 GCA_009719975.1 Parabacteroides merdae BIOML-A6 SAMN11946242 2015-04-01 USA Homo sapiens 861 2 0 1 2.24 71 GCA_009720015.1 Parabacteroides merdae BIOML-A4 SAMN11946240 2015-04-01 USA Homo sapiens 861 2 0 1 2.24 72 GCA_009720045.1 Parabacteroides merdae BIOML-A2 SAMN11946238 2015-04-01 USA Homo sapiens 861 2 0 1 2.24 73 GCA_009719865.1 Parabacteroides merdae BIOML-A11 SAMN11946247 2015-04-01 USA Homo sapiens 862 2 0 1 2.24 74 GCA_000433955.1 Parabacteroides merdae CAG:48 SAMEA3138585 - - - 863 0 0 1 1.00 75 GCA_018289315.1 Parabacteroides merdae CL06T03C08 SAMN16451193 2009-05 USA Homo sapiens 865 1 0 1 1.41 76 GCA_022734235.1 Parabacteroides merdae Map_77_010 SAMN20302087 2016-08-22 Mozambique Homo sapiens 865 0 0 1 1.00 77 GCA_003540425.1 Parabacteroides merdae UBA9108 SAMN08019952 - - - 866 0 0 1 1.00 78 GCA_958435975.1 Parabacteroides merdae SRR18940302_bin.10_MetaWRAP_v1.3_MAG SAMEA114064873 2020 - - 874 0 0 1 1.00 79 GCA_009719845.1 Parabacteroides merdae BIOML-A12 SAMN11946248 2015-01-07 USA Homo sapiens 876 1 0 1 1.41 80 GCA_022721235.1 Parabacteroides merdae Map_116_023 SAMN20301106 2016-08-24 Mozambique Homo sapiens 878 0 0 1 1.00 81 GCA_948955895.1 Parabacteroides merdae MGBC125402 SAMEA112398864 - China - 878 0 0 1 1.00 82 GCA_026169675.1 Parabacteroides merdae bin_3_LilbubCat SAMN31537019 2022 USA Felis catus 879 0 0 1 1.00 83 GCA_028328905.1 Parabacteroides merdae 1001095st1_A4_1001095IJ_161003 SAMN31322756 2016-10-03 USA Homo sapiens 880 2 0 1 2.24 84 GCA_015548105.1 Parabacteroides merdae 1001095IJ_161003_F2 SAMN15533152 2016-10-03 USA Homo sapiens 881 2 0 1 2.24 85 GCA_948961025.1 Parabacteroides merdae MGBC123275 SAMEA112396761 - China - 881 0 0 0 0.00 86 GCA_963557355.1 Parabacteroides merdae ERS329797__bin67 SAMEA114501434 2006 USA - 883 0 0 1 1.00 87 GCA_959023305.1 Parabacteroides merdae DRR221351_bin.34_MetaWRAP_v1.3_MAG SAMEA114096365 2018 China - 884 0 0 1 1.00 88 GCA_959607325.1 Parabacteroides merdae SRR16244398_bin.24_MetaWRAP_v1.3_MAG SAMEA114095955 2020-11-03 Malaysia - 884 0 0 1 1.00 89 GCA_910577545.1 Parabacteroides merdae MGBC103592 SAMEA8805027 - China - 885 1 0 1 1.41 90 GCA_947368825.1 Parabacteroides merdae SRR15431195_bin.21_metawrap_v1.3_MAG SAMEA112147274 2021-02-01 China - 885 0 0 1 1.00 91 GCA_949902765.1 Parabacteroides merdae MGG12699_1680015504 SAMEA112936375 2017-10-25 China - 885 1 0 1 1.41 92 GCA_019733655.1 Parabacteroides merdae K34_1 SAMN14389557 2020-03-01 China Homo sapiens 886 4 0 1 4.12 93 GCA_015670365.1 Parabacteroides merdae 1001262B_160229_F9 SAMN15533105 2016-02-29 USA Homo sapiens 887 1 0 1 1.41 94 GCA_028328885.1 Parabacteroides merdae 1001262st1_E8_1001262B_160229 SAMN31322757 2016-02-29 USA Homo sapiens 887 1 0 1 1.41 95 GCA_036807005.1 Parabacteroides merdae CTOTU32100 SAMN28749760 - - - 887 1 0 1 1.41 96 GCA_003475305.1 Parabacteroides merdae AF33-34 SAMN09734606 2014-01-01 China Homo sapiens 889 3 0 1 3.16 97 GCA_003507315.1 Parabacteroides merdae UBA11481 SAMN08018825 - - - 889 0 0 1 1.00 98 GCA_034134505.1 Parabacteroides merdae S_657 SAMN37770249 - Denmark Homo sapiens 890 0 0 0 0.00 99 GCA_905192885.1 Parabacteroides merdae ERR1430520-bin.25 SAMEA7846734 - China - 890 0 0 1 1.00 100 GCA_958370885.1 Parabacteroides merdae SRR17798048_bin.12_MetaWRAP_v1.3_MAG SAMEA114066098 2020-04/2020-11 China - 890 0 0 1 1.00