GCA_036819475.1 - 8 region(s)

Identified primary metabolite regions

c00006_gnlPro.. (original name was: gnl|Prokka|PDJLIGFF_6)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 6.1	porA	SCFA	19,809	42,652	porA C. sporogenes	POR	80%
Region 6.2	succinate2propionate	SCFA	116,656	141,362	Succinate to propionate B. theta	PRO	75%

c00007_gnlPro.. (original name was: gnl|Prokka|PDJLIGFF_7)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 7.1	NADH_dehydrogenase_I	E-MGC	19,416	49,654	NADH dehydrogenase I Bacteroides sp.	NADHD	80%

c00017_gnlPro.. (original name was: gnl|Prokka|PDJLIGFF_17)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 17.1	Fumarate2succinate	SCFA	48,515	71,985	Fumarate to succinate B. thetaiotaomicron	SUC	100%

c00028_gnlPro.. (original name was: gnl|Prokka|PDJLIGFF_28)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 28.1	Rnf_complex	E-MGC	37,000	53,608	Rnf complex C. sporogenes	RNF	83%

c00037_gnlPro.. (original name was: gnl|Prokka|PDJLIGFF_37)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 37.1	PFOR_II_pathway	SCFA	8,822	32,379	PFOR II pathway B. thetaiotaomicron	PFORII	100%

c00056_gnlPro.. (original name was: gnl|Prokka|PDJLIGFF_56)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 56.1	TPP_AA_metabolism	Putative	7,281	24,139

c00103_gnlPro.. (original name was: gnl|Prokka|PDJLIGFF_103)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 103.1	Pyruvate2acetate-formate	SCFA	1	3,681	Pyruvate to acetate-formate B. thetaiotaomicron	PFL_acetate	100%

No primary metabolite regions were found in these records:: c00001_gnlPro.. (original name was: gnl|Prokka|PDJLIGFF_1); c00002_gnlPro.. (original name was: gnl|Prokka|PDJLIGFF_2); c00003_gnlPro.. (original name was: gnl|Prokka|PDJLIGFF_3); c00004_gnlPro.. (original name was: gnl|Prokka|PDJLIGFF_4); c00005_gnlPro.. (original name was: gnl|Prokka|PDJLIGFF_5); c00008_gnlPro.. (original name was: gnl|Prokka|PDJLIGFF_8); c00009_gnlPro.. (original name was: gnl|Prokka|PDJLIGFF_9); c00010_gnlPro.. (original name was: gnl|Prokka|PDJLIGFF_10); c00011_gnlPro.. (original name was: gnl|Prokka|PDJLIGFF_11); c00012_gnlPro.. (original name was: gnl|Prokka|PDJLIGFF_12); c00013_gnlPro.. (original name was: gnl|Prokka|PDJLIGFF_13); c00014_gnlPro.. (original name was: gnl|Prokka|PDJLIGFF_14); c00015_gnlPro.. (original name was: gnl|Prokka|PDJLIGFF_15); c00016_gnlPro.. (original name was: gnl|Prokka|PDJLIGFF_16); c00018_gnlPro.. (original name was: gnl|Prokka|PDJLIGFF_18); c00019_gnlPro.. (original name was: gnl|Prokka|PDJLIGFF_19); c00020_gnlPro.. (original name was: gnl|Prokka|PDJLIGFF_20); c00021_gnlPro.. (original name was: gnl|Prokka|PDJLIGFF_21); c00022_gnlPro.. (original name was: gnl|Prokka|PDJLIGFF_22); c00023_gnlPro.. (original name was: gnl|Prokka|PDJLIGFF_23); c00024_gnlPro.. (original name was: gnl|Prokka|PDJLIGFF_24); c00025_gnlPro.. (original name was: gnl|Prokka|PDJLIGFF_25); c00026_gnlPro.. (original name was: gnl|Prokka|PDJLIGFF_26); c00027_gnlPro.. (original name was: gnl|Prokka|PDJLIGFF_27); c00029_gnlPro.. (original name was: gnl|Prokka|PDJLIGFF_29); c00030_gnlPro.. (original name was: gnl|Prokka|PDJLIGFF_30); c00031_gnlPro.. (original name was: gnl|Prokka|PDJLIGFF_31); c00032_gnlPro.. (original name was: gnl|Prokka|PDJLIGFF_32); c00033_gnlPro.. (original name was: gnl|Prokka|PDJLIGFF_33); c00034_gnlPro.. (original name was: gnl|Prokka|PDJLIGFF_34); c00035_gnlPro.. (original name was: gnl|Prokka|PDJLIGFF_35); c00036_gnlPro.. (original name was: gnl|Prokka|PDJLIGFF_36); c00038_gnlPro.. (original name was: gnl|Prokka|PDJLIGFF_38); c00039_gnlPro.. (original name was: gnl|Prokka|PDJLIGFF_39); c00040_gnlPro.. (original name was: gnl|Prokka|PDJLIGFF_40); c00041_gnlPro.. (original name was: gnl|Prokka|PDJLIGFF_41); c00042_gnlPro.. (original name was: gnl|Prokka|PDJLIGFF_42); c00043_gnlPro.. (original name was: gnl|Prokka|PDJLIGFF_43); c00044_gnlPro.. (original name was: gnl|Prokka|PDJLIGFF_44); c00045_gnlPro.. (original name was: gnl|Prokka|PDJLIGFF_45); c00046_gnlPro.. (original name was: gnl|Prokka|PDJLIGFF_46); c00047_gnlPro.. (original name was: gnl|Prokka|PDJLIGFF_47); c00048_gnlPro.. (original name was: gnl|Prokka|PDJLIGFF_48); c00049_gnlPro.. (original name was: gnl|Prokka|PDJLIGFF_49); c00050_gnlPro.. (original name was: gnl|Prokka|PDJLIGFF_50); c00051_gnlPro.. (original name was: gnl|Prokka|PDJLIGFF_51); c00052_gnlPro.. (original name was: gnl|Prokka|PDJLIGFF_52); c00053_gnlPro.. (original name was: gnl|Prokka|PDJLIGFF_53); c00054_gnlPro.. (original name was: gnl|Prokka|PDJLIGFF_54); c00055_gnlPro.. (original name was: gnl|Prokka|PDJLIGFF_55); c00057_gnlPro.. (original name was: gnl|Prokka|PDJLIGFF_57); c00058_gnlPro.. (original name was: gnl|Prokka|PDJLIGFF_58); c00059_gnlPro.. (original name was: gnl|Prokka|PDJLIGFF_59); c00060_gnlPro.. (original name was: gnl|Prokka|PDJLIGFF_60); c00061_gnlPro.. (original name was: gnl|Prokka|PDJLIGFF_61); c00062_gnlPro.. (original name was: gnl|Prokka|PDJLIGFF_62); c00063_gnlPro.. (original name was: gnl|Prokka|PDJLIGFF_63); c00064_gnlPro.. (original name was: gnl|Prokka|PDJLIGFF_64); c00065_gnlPro.. (original name was: gnl|Prokka|PDJLIGFF_65); c00066_gnlPro.. (original name was: gnl|Prokka|PDJLIGFF_66); c00067_gnlPro.. (original name was: gnl|Prokka|PDJLIGFF_67); c00068_gnlPro.. (original name was: gnl|Prokka|PDJLIGFF_68); c00069_gnlPro.. (original name was: gnl|Prokka|PDJLIGFF_69); c00070_gnlPro.. (original name was: gnl|Prokka|PDJLIGFF_70); c00071_gnlPro.. (original name was: gnl|Prokka|PDJLIGFF_71); c00072_gnlPro.. (original name was: gnl|Prokka|PDJLIGFF_72); c00073_gnlPro.. (original name was: gnl|Prokka|PDJLIGFF_73); c00074_gnlPro.. (original name was: gnl|Prokka|PDJLIGFF_74); c00075_gnlPro.. (original name was: gnl|Prokka|PDJLIGFF_75); c00076_gnlPro.. (original name was: gnl|Prokka|PDJLIGFF_76); c00077_gnlPro.. (original name was: gnl|Prokka|PDJLIGFF_77); c00078_gnlPro.. (original name was: gnl|Prokka|PDJLIGFF_78); c00079_gnlPro.. (original name was: gnl|Prokka|PDJLIGFF_79); c00080_gnlPro.. (original name was: gnl|Prokka|PDJLIGFF_80); c00081_gnlPro.. (original name was: gnl|Prokka|PDJLIGFF_81); c00082_gnlPro.. (original name was: gnl|Prokka|PDJLIGFF_82); c00083_gnlPro.. (original name was: gnl|Prokka|PDJLIGFF_83); c00084_gnlPro.. (original name was: gnl|Prokka|PDJLIGFF_84); c00085_gnlPro.. (original name was: gnl|Prokka|PDJLIGFF_85); c00086_gnlPro.. (original name was: gnl|Prokka|PDJLIGFF_86); c00087_gnlPro.. (original name was: gnl|Prokka|PDJLIGFF_87); c00088_gnlPro.. (original name was: gnl|Prokka|PDJLIGFF_88); c00089_gnlPro.. (original name was: gnl|Prokka|PDJLIGFF_89); c00090_gnlPro.. (original name was: gnl|Prokka|PDJLIGFF_90); c00091_gnlPro.. (original name was: gnl|Prokka|PDJLIGFF_91); c00092_gnlPro.. (original name was: gnl|Prokka|PDJLIGFF_92); c00093_gnlPro.. (original name was: gnl|Prokka|PDJLIGFF_93); c00094_gnlPro.. (original name was: gnl|Prokka|PDJLIGFF_94); c00095_gnlPro.. (original name was: gnl|Prokka|PDJLIGFF_95); c00096_gnlPro.. (original name was: gnl|Prokka|PDJLIGFF_96); c00097_gnlPro.. (original name was: gnl|Prokka|PDJLIGFF_97); c00098_gnlPro.. (original name was: gnl|Prokka|PDJLIGFF_98); c00099_gnlPro.. (original name was: gnl|Prokka|PDJLIGFF_99); c00100_gnlPro.. (original name was: gnl|Prokka|PDJLIGFF_100); c00101_gnlPro.. (original name was: gnl|Prokka|PDJLIGFF_101); c00102_gnlPro.. (original name was: gnl|Prokka|PDJLIGFF_102); c00104_gnlPro.. (original name was: gnl|Prokka|PDJLIGFF_104); c00105_gnlPro.. (original name was: gnl|Prokka|PDJLIGFF_105); c00106_gnlPro.. (original name was: gnl|Prokka|PDJLIGFF_106)

Compact view

c00006_gnlPro.. - Region 1 - porA

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Location: 19,809 - 42,652 nt. (total: 22,844 nt) Show pHMM detection rules used

porA: (Fer4_7 and TPP_enzyme_C and POR and POR_N and PFOR_II and not (EKR or Fer4_16))

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core biosynthetic genes

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transport-related genes

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c00006_gnlPro.. - Region 2 - succinate2propionate

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Location: 116,656 - 141,362 nt. (total: 24,707 nt) Show pHMM detection rules used

succinate2propionate: (minimum(4, [AcetylCoA_hyd_C, AcetylCoA_hydro, B12-binding, Biotin_lipoyl, Glyoxalase_4, HMGL-like, MM_CoA_mutase, MeaB, OAD_beta, OAD_gamma, PYC_OADA]) and minimum(1, [CT_Btheta, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, CT_Vparvula]) and not Cytidylate_kin)

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core biosynthetic genes

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c00007_gnlPro.. - Region 1 - NADH_dehydrogenase_I

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Location: 19,416 - 49,654 nt. (total: 30,239 nt) Show pHMM detection rules used

NADH_dehydrogenase_I: (Oxidored_q4 and Oxidored_q6 and Complex1_30kDa and Complex1_49kDa and NADHdh and Oxidored_q3 and Oxidored_q2 and minimum(4, [Fe-2S_thioredx, Fer2_4, Fer4_7, Molybdop_Fe4S4, Molydop_binding, NADH-G_4Fe-4S_3, NADH_4Fe-4S, Proton_antipo_M, Proton_antipo_N, SLBB]))

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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c00017_gnlPro.. - Region 1 - Fumarate2succinate

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Location: 48,515 - 71,985 nt. (total: 23,471 nt) Show pHMM detection rules used

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

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core biosynthetic genes

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c00028_gnlPro.. - Region 1 - Rnf_complex

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Location: 37,000 - 53,608 nt. (total: 16,609 nt) Show pHMM detection rules used

Region on contig edge.

Rnf_complex: (Complex1_51K and minimum(5, [FMN_bind, FeS, Fer4, Fer4_9, NQR2_RnfD_RnfE, Rnf-Nqr, RnfC_N, SLBB]))

Legend:

core biosynthetic genes

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transport-related genes

regulatory genes

resistance genes

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c00037_gnlPro.. - Region 1 - PFOR_II_pathway

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Location: 8,822 - 32,379 nt. (total: 23,558 nt) Show pHMM detection rules used

PFOR_II_pathway: cds(POR and POR_N and PFOR_II and EKR and Fer4_16 and TPP_enzyme_C)

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

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c00056_gnlPro.. - Region 1 - TPP_AA_metabolism

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Location: 7,281 - 24,139 nt. (total: 16,859 nt) Show pHMM detection rules used

Region on contig edge.

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

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core biosynthetic genes

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No matches found.

c00103_gnlPro.. - Region 1 - Pyruvate2acetate-formate

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Location: 1 - 3,681 nt. (total: 3,681 nt) Show pHMM detection rules used

Region on contig edge.

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

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core biosynthetic genes

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