GCA_036843545.1 - 10 region(s)

Identified primary metabolite regions

c00004_gnlPro.. (original name was: gnl|Prokka|HIBBIEJD_4)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 4.1	succinate2propionate	SCFA	12,084	36,712	Succinate to propionate B. theta	PRO	58%

c00005_gnlPro.. (original name was: gnl|Prokka|HIBBIEJD_5)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 5.1	NADH_dehydrogenase_I	E-MGC	30,871	61,102	NADH dehydrogenase I Bacteroides sp.	NADHD	80%

c00013_gnlPro.. (original name was: gnl|Prokka|HIBBIEJD_13)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 13.1	Rnf_complex	E-MGC	5,300	30,534	Rnf complex C. sporogenes	RNF	83%

c00014_gnlPro.. (original name was: gnl|Prokka|HIBBIEJD_14)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 14.1	Fumarate2succinate	SCFA	1	13,487	Fumarate to succinate B. thetaiotaomicron	SUC	100%

c00018_gnlPro.. (original name was: gnl|Prokka|HIBBIEJD_18)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 18.1	PFOR_II_pathway	SCFA	51,110	64,752	PFOR II pathway B. thetaiotaomicron	PFORII	100%

c00023_gnlPro.. (original name was: gnl|Prokka|HIBBIEJD_23)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 23.1	GR_fatty_acids,Pyruvate2acetate-formate	SCFA	23,096	51,721	Pyruvate to acetate-formate B. thetaiotaomicron	PFL_acetate	100%

c00025_gnlPro.. (original name was: gnl|Prokka|HIBBIEJD_25)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 25.1	porA	SCFA	22,098	44,941	porA C. sporogenes	POR	80%

c00031_gnlPro.. (original name was: gnl|Prokka|HIBBIEJD_31)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 31.1	TPP_AA_metabolism	Putative	29,460	44,616

c00041_gnlPro.. (original name was: gnl|Prokka|HIBBIEJD_41)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 41.1	Rnf_complex	E-MGC	17,961	32,645	Rnf complex C. sporogenes	RNF	50%

c00052_gnlPro.. (original name was: gnl|Prokka|HIBBIEJD_52)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 52.1	TPP_fatty_acids	Putative	1	17,586

Compact view

c00004_gnlPro.. - Region 1 - succinate2propionate

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Location: 12,084 - 36,712 nt. (total: 24,629 nt) Show pHMM detection rules used

succinate2propionate: (minimum(4, [AcetylCoA_hyd_C, AcetylCoA_hydro, B12-binding, Biotin_lipoyl, Glyoxalase_4, HMGL-like, MM_CoA_mutase, MeaB, OAD_beta, OAD_gamma, PYC_OADA]) and minimum(1, [CT_Btheta, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, CT_Vparvula]) and not Cytidylate_kin)

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core biosynthetic genes

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transport-related genes

regulatory genes

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c00005_gnlPro.. - Region 1 - NADH_dehydrogenase_I

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Location: 30,871 - 61,102 nt. (total: 30,232 nt) Show pHMM detection rules used

NADH_dehydrogenase_I: (Oxidored_q4 and Oxidored_q6 and Complex1_30kDa and Complex1_49kDa and NADHdh and Oxidored_q3 and Oxidored_q2 and minimum(4, [Fe-2S_thioredx, Fer2_4, Fer4_7, Molybdop_Fe4S4, Molydop_binding, NADH-G_4Fe-4S_3, NADH_4Fe-4S, Proton_antipo_M, Proton_antipo_N, SLBB]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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c00013_gnlPro.. - Region 1 - Rnf_complex

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Location: 5,300 - 30,534 nt. (total: 25,235 nt) Show pHMM detection rules used

Rnf_complex: (Complex1_51K and minimum(5, [FMN_bind, FeS, Fer4, Fer4_9, NQR2_RnfD_RnfE, Rnf-Nqr, RnfC_N, SLBB]))

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regulatory genes

resistance genes

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c00014_gnlPro.. - Region 1 - Fumarate2succinate

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Location: 1 - 13,487 nt. (total: 13,487 nt) Show pHMM detection rules used

Region on contig edge.

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

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c00018_gnlPro.. - Region 1 - PFOR_II_pathway

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Location: 51,110 - 64,752 nt. (total: 13,643 nt) Show pHMM detection rules used

Region on contig edge.

PFOR_II_pathway: cds(POR and POR_N and PFOR_II and EKR and Fer4_16 and TPP_enzyme_C)

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c00023_gnlPro.. - Region 1 - GR_fatty_acids,Pyruvate2acetate-formate

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Location: 23,096 - 51,721 nt. (total: 28,626 nt) Show pHMM detection rules used

GR_fatty_acids: (minimum(1, [Gly_430_pcre, Gly_8-9_TMA, Gly_radical, Gly_radical_scatole, PFL-like, PFL_6_pcresol, PFL_9_tma, PFL_acetate1, PFL_acetate2, PFL_proline, PFL_toluene]) and not NRDD and (minimum(2, [ACD1_car, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, Butyrate_kinase, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_2_CAF, CoA_trans_6_Glutaconate, E1_dh, ECH_1, ECH_2, HBT, HBT_2, HCDH, HpaB, Ketoacyl-synt_C, Thiolase_C, Thiolase_N, adh_short, adh_short_C2]) or FA_synthesis) and not (POR or POR_N or PFOR_II))
Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

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c00025_gnlPro.. - Region 1 - porA

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Location: 22,098 - 44,941 nt. (total: 22,844 nt) Show pHMM detection rules used

porA: (Fer4_7 and TPP_enzyme_C and POR and POR_N and PFOR_II and not (EKR or Fer4_16))

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c00031_gnlPro.. - Region 1 - TPP_AA_metabolism

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Location: 29,460 - 44,616 nt. (total: 15,157 nt) Show pHMM detection rules used

Region on contig edge.

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

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resistance genes

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c00041_gnlPro.. - Region 1 - Rnf_complex

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Location: 17,961 - 32,645 nt. (total: 14,685 nt) Show pHMM detection rules used

Region on contig edge.

Rnf_complex: (Complex1_51K and minimum(5, [FMN_bind, FeS, Fer4, Fer4_9, NQR2_RnfD_RnfE, Rnf-Nqr, RnfC_N, SLBB]))

Legend:

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regulatory genes

resistance genes

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c00052_gnlPro.. - Region 1 - TPP_fatty_acids

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Location: 1 - 17,586 nt. (total: 17,586 nt) Show pHMM detection rules used

Region on contig edge.

TPP_fatty_acids: (TPP_enzyme_C and (minimum(2, [ACD1_car, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, Butyrate_kinase, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_2_CAF, CoA_trans_6_Glutaconate, E1_dh, ECH_1, ECH_2, HBT, HBT_2, HCDH, HpaB, Ketoacyl-synt_C, Thiolase_C, Thiolase_N, adh_short, adh_short_C2]) or FA_synthesis) and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and not (POR or POR_N))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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