GCA_036843565.1 - 7 region(s)

Identified primary metabolite regions

c00002_gnlPro.. (original name was: gnl|Prokka|FGJFBCEM_2)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 2.1	Fumarate2succinate	SCFA	93,233	116,703	Fumarate to succinate B. thetaiotaomicron	SUC	100%

c00007_gnlPro.. (original name was: gnl|Prokka|FGJFBCEM_7)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 7.1	succinate2propionate	SCFA	18,769	43,477	Succinate to propionate B. theta	PRO	75%

c00008_gnlPro.. (original name was: gnl|Prokka|FGJFBCEM_8)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 8.1	TPP_AA_metabolism	Putative	6,647	32,728

c00011_gnlPro.. (original name was: gnl|Prokka|FGJFBCEM_11)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 11.1	PFOR_II_pathway	SCFA	113,003	129,130	PFOR II pathway B. thetaiotaomicron	PFORII	100%

c00016_gnlPro.. (original name was: gnl|Prokka|FGJFBCEM_16)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 16.1	PFOR_II_pathway	SCFA	48,109	71,666	PFOR II pathway B. thetaiotaomicron	PFORII	100%

c00018_gnlPro.. (original name was: gnl|Prokka|FGJFBCEM_18)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 18.1	NADH_dehydrogenase_I	E-MGC	19,339	49,570	NADH dehydrogenase I Bacteroides sp.	NADHD	80%

c00024_gnlPro.. (original name was: gnl|Prokka|FGJFBCEM_24)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 24.1	Rnf_complex	E-MGC	11,447	36,681	Rnf complex C. sporogenes	RNF	83%

No primary metabolite regions were found in these records:: c00001_gnlPro.. (original name was: gnl|Prokka|FGJFBCEM_1); c00003_gnlPro.. (original name was: gnl|Prokka|FGJFBCEM_3); c00004_gnlPro.. (original name was: gnl|Prokka|FGJFBCEM_4); c00005_gnlPro.. (original name was: gnl|Prokka|FGJFBCEM_5); c00006_gnlPro.. (original name was: gnl|Prokka|FGJFBCEM_6); c00009_gnlPro.. (original name was: gnl|Prokka|FGJFBCEM_9); c00010_gnlPro.. (original name was: gnl|Prokka|FGJFBCEM_10); c00012_gnlPro.. (original name was: gnl|Prokka|FGJFBCEM_12); c00013_gnlPro.. (original name was: gnl|Prokka|FGJFBCEM_13); c00014_gnlPro.. (original name was: gnl|Prokka|FGJFBCEM_14); c00015_gnlPro.. (original name was: gnl|Prokka|FGJFBCEM_15); c00017_gnlPro.. (original name was: gnl|Prokka|FGJFBCEM_17); c00019_gnlPro.. (original name was: gnl|Prokka|FGJFBCEM_19); c00020_gnlPro.. (original name was: gnl|Prokka|FGJFBCEM_20); c00021_gnlPro.. (original name was: gnl|Prokka|FGJFBCEM_21); c00022_gnlPro.. (original name was: gnl|Prokka|FGJFBCEM_22); c00023_gnlPro.. (original name was: gnl|Prokka|FGJFBCEM_23); c00025_gnlPro.. (original name was: gnl|Prokka|FGJFBCEM_25); c00026_gnlPro.. (original name was: gnl|Prokka|FGJFBCEM_26); c00027_gnlPro.. (original name was: gnl|Prokka|FGJFBCEM_27); c00028_gnlPro.. (original name was: gnl|Prokka|FGJFBCEM_28); c00029_gnlPro.. (original name was: gnl|Prokka|FGJFBCEM_29); c00030_gnlPro.. (original name was: gnl|Prokka|FGJFBCEM_30); c00031_gnlPro.. (original name was: gnl|Prokka|FGJFBCEM_31); c00032_gnlPro.. (original name was: gnl|Prokka|FGJFBCEM_32); c00033_gnlPro.. (original name was: gnl|Prokka|FGJFBCEM_33); c00034_gnlPro.. (original name was: gnl|Prokka|FGJFBCEM_34); c00035_gnlPro.. (original name was: gnl|Prokka|FGJFBCEM_35); c00036_gnlPro.. (original name was: gnl|Prokka|FGJFBCEM_36); c00037_gnlPro.. (original name was: gnl|Prokka|FGJFBCEM_37); c00038_gnlPro.. (original name was: gnl|Prokka|FGJFBCEM_38); c00039_gnlPro.. (original name was: gnl|Prokka|FGJFBCEM_39); c00040_gnlPro.. (original name was: gnl|Prokka|FGJFBCEM_40); c00041_gnlPro.. (original name was: gnl|Prokka|FGJFBCEM_41); c00042_gnlPro.. (original name was: gnl|Prokka|FGJFBCEM_42); c00043_gnlPro.. (original name was: gnl|Prokka|FGJFBCEM_43); c00044_gnlPro.. (original name was: gnl|Prokka|FGJFBCEM_44); c00045_gnlPro.. (original name was: gnl|Prokka|FGJFBCEM_45); c00046_gnlPro.. (original name was: gnl|Prokka|FGJFBCEM_46); c00047_gnlPro.. (original name was: gnl|Prokka|FGJFBCEM_47); c00048_gnlPro.. (original name was: gnl|Prokka|FGJFBCEM_48); c00049_gnlPro.. (original name was: gnl|Prokka|FGJFBCEM_49); c00050_gnlPro.. (original name was: gnl|Prokka|FGJFBCEM_50); c00051_gnlPro.. (original name was: gnl|Prokka|FGJFBCEM_51); c00052_gnlPro.. (original name was: gnl|Prokka|FGJFBCEM_52); c00053_gnlPro.. (original name was: gnl|Prokka|FGJFBCEM_53); c00054_gnlPro.. (original name was: gnl|Prokka|FGJFBCEM_54); c00055_gnlPro.. (original name was: gnl|Prokka|FGJFBCEM_55); c00056_gnlPro.. (original name was: gnl|Prokka|FGJFBCEM_56); c00057_gnlPro.. (original name was: gnl|Prokka|FGJFBCEM_57); c00058_gnlPro.. (original name was: gnl|Prokka|FGJFBCEM_58)

Compact view

c00002_gnlPro.. - Region 1 - Fumarate2succinate

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Location: 93,233 - 116,703 nt. (total: 23,471 nt) Show pHMM detection rules used

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

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c00007_gnlPro.. - Region 1 - succinate2propionate

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Location: 18,769 - 43,477 nt. (total: 24,709 nt) Show pHMM detection rules used

succinate2propionate: (minimum(4, [AcetylCoA_hyd_C, AcetylCoA_hydro, B12-binding, Biotin_lipoyl, Glyoxalase_4, HMGL-like, MM_CoA_mutase, MeaB, OAD_beta, OAD_gamma, PYC_OADA]) and minimum(1, [CT_Btheta, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, CT_Vparvula]) and not Cytidylate_kin)

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core biosynthetic genes

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transport-related genes

regulatory genes

resistance genes

encapsulation genes

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c00008_gnlPro.. - Region 1 - TPP_AA_metabolism

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Location: 6,647 - 32,728 nt. (total: 26,082 nt) Show pHMM detection rules used

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

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core biosynthetic genes

additional biosynthetic genes

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regulatory genes

resistance genes

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No matches found.

c00011_gnlPro.. - Region 1 - PFOR_II_pathway

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Location: 113,003 - 129,130 nt. (total: 16,128 nt) Show pHMM detection rules used

Region on contig edge.

PFOR_II_pathway: cds(POR and POR_N and PFOR_II and EKR and Fer4_16 and TPP_enzyme_C)

Legend:

core biosynthetic genes

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transport-related genes

regulatory genes

resistance genes

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c00016_gnlPro.. - Region 1 - PFOR_II_pathway

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Location: 48,109 - 71,666 nt. (total: 23,558 nt) Show pHMM detection rules used

PFOR_II_pathway: cds(POR and POR_N and PFOR_II and EKR and Fer4_16 and TPP_enzyme_C)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

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resistance genes

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c00018_gnlPro.. - Region 1 - NADH_dehydrogenase_I

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Location: 19,339 - 49,570 nt. (total: 30,232 nt) Show pHMM detection rules used

NADH_dehydrogenase_I: (Oxidored_q4 and Oxidored_q6 and Complex1_30kDa and Complex1_49kDa and NADHdh and Oxidored_q3 and Oxidored_q2 and minimum(4, [Fe-2S_thioredx, Fer2_4, Fer4_7, Molybdop_Fe4S4, Molydop_binding, NADH-G_4Fe-4S_3, NADH_4Fe-4S, Proton_antipo_M, Proton_antipo_N, SLBB]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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KnownClusterBlast

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c00024_gnlPro.. - Region 1 - Rnf_complex

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Location: 11,447 - 36,681 nt. (total: 25,235 nt) Show pHMM detection rules used

Rnf_complex: (Complex1_51K and minimum(5, [FMN_bind, FeS, Fer4, Fer4_9, NQR2_RnfD_RnfE, Rnf-Nqr, RnfC_N, SLBB]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

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