GCA_039414055.1 - 5 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

gnlProkkaNCGNHNBL_1 (original name was: gnl|Prokka|NCGNHNBL_1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 1.1	terpene	368,829	389,710

gnlProkkaNCGNHNBL_4 (original name was: gnl|Prokka|NCGNHNBL_4)

Region	Type	From	To	Most similar known cluster		Similarity
Region 4.1	cyclic-lactone-autoinducer	191,658	212,363

gnlProkkaNCGNHNBL_8 (original name was: gnl|Prokka|NCGNHNBL_8)

Region	Type	From	To	Most similar known cluster		Similarity
Region 8.1	T3PKS	1	33,588

gnlProkkaNCGNHNBL_13 (original name was: gnl|Prokka|NCGNHNBL_13)

Region	Type	From	To	Most similar known cluster		Similarity
Region 13.1	RiPP-like	60,500	72,650

gnlProkkaNCGNHNBL_14 (original name was: gnl|Prokka|NCGNHNBL_14)

Region	Type	From	To	Most similar known cluster		Similarity
Region 14.1	NRPS	52,220	92,262	mutanocyclin/leuvalin/tyrvalin	NRP	46%

Region	Type	From	To	Most similar known cluster	Similarity
Region 1.1	terpene	368,829	389,710
Region 4.1	cyclic-lactone-autoinducer	191,658	212,363
Region 8.1	T3PKS	1	33,588
Region 13.1	RiPP-like	60,500	72,650
Region 14.1	NRPS	52,220	92,262	mutanocyclin/leuvalin/tyrvalin	NRP	46%

No secondary metabolite regions were found in these records:: gnlProkkaNCGNHNBL_2 (original name was: gnl|Prokka|NCGNHNBL_2); gnlProkkaNCGNHNBL_3 (original name was: gnl|Prokka|NCGNHNBL_3); gnlProkkaNCGNHNBL_5 (original name was: gnl|Prokka|NCGNHNBL_5); gnlProkkaNCGNHNBL_6 (original name was: gnl|Prokka|NCGNHNBL_6); gnlProkkaNCGNHNBL_7 (original name was: gnl|Prokka|NCGNHNBL_7); gnlProkkaNCGNHNBL_9 (original name was: gnl|Prokka|NCGNHNBL_9); gnlProkkaNCGNHNBL_10 (original name was: gnl|Prokka|NCGNHNBL_10); gnlProkkaNCGNHNBL_11 (original name was: gnl|Prokka|NCGNHNBL_11); gnlProkkaNCGNHNBL_12 (original name was: gnl|Prokka|NCGNHNBL_12); gnlProkkaNCGNHNBL_15 (original name was: gnl|Prokka|NCGNHNBL_15); gnlProkkaNCGNHNBL_16 (original name was: gnl|Prokka|NCGNHNBL_16); gnlProkkaNCGNHNBL_17 (original name was: gnl|Prokka|NCGNHNBL_17); gnlProkkaNCGNHNBL_18 (original name was: gnl|Prokka|NCGNHNBL_18); gnlProkkaNCGNHNBL_19 (original name was: gnl|Prokka|NCGNHNBL_19); gnlProkkaNCGNHNBL_20 (original name was: gnl|Prokka|NCGNHNBL_20); gnlProkkaNCGNHNBL_21 (original name was: gnl|Prokka|NCGNHNBL_21); gnlProkkaNCGNHNBL_22 (original name was: gnl|Prokka|NCGNHNBL_22); gnlProkkaNCGNHNBL_23 (original name was: gnl|Prokka|NCGNHNBL_23); gnlProkkaNCGNHNBL_24 (original name was: gnl|Prokka|NCGNHNBL_24); gnlProkkaNCGNHNBL_25 (original name was: gnl|Prokka|NCGNHNBL_25); gnlProkkaNCGNHNBL_26 (original name was: gnl|Prokka|NCGNHNBL_26); gnlProkkaNCGNHNBL_27 (original name was: gnl|Prokka|NCGNHNBL_27); gnlProkkaNCGNHNBL_28 (original name was: gnl|Prokka|NCGNHNBL_28); gnlProkkaNCGNHNBL_29 (original name was: gnl|Prokka|NCGNHNBL_29); gnlProkkaNCGNHNBL_30 (original name was: gnl|Prokka|NCGNHNBL_30); gnlProkkaNCGNHNBL_31 (original name was: gnl|Prokka|NCGNHNBL_31); gnlProkkaNCGNHNBL_32 (original name was: gnl|Prokka|NCGNHNBL_32); gnlProkkaNCGNHNBL_33 (original name was: gnl|Prokka|NCGNHNBL_33); gnlProkkaNCGNHNBL_34 (original name was: gnl|Prokka|NCGNHNBL_34); gnlProkkaNCGNHNBL_35 (original name was: gnl|Prokka|NCGNHNBL_35); gnlProkkaNCGNHNBL_36 (original name was: gnl|Prokka|NCGNHNBL_36)

Compact view

gnlProkkaNCGNHNBL_1 - Region 1 - terpene

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Location: 368,829 - 389,710 nt. (total: 20,882 nt) Show pHMM detection rules used

terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene overview

KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaNCGNHNBL_4 - Region 1 - cyclic-lactone-autoinducer

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Location: 191,658 - 212,363 nt. (total: 20,706 nt) Show pHMM detection rules used

Region on contig edge.

cyclic-lactone-autoinducer: (TIGR04223 or AgrB)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

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resistance

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Gene details

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Gene overview

KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaNCGNHNBL_8 - Region 1 - T3PKS

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Location: 1 - 33,588 nt. (total: 33,588 nt) Show pHMM detection rules used

Region on contig edge.

T3PKS: (Chal_sti_synt_C or Chal_sti_synt_N)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Gene overview

KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaNCGNHNBL_13 - Region 1 - RiPP-like

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Location: 60,500 - 72,650 nt. (total: 12,151 nt) Show pHMM detection rules used

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193 or (YcaO or TIGR03604))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Gene overview

KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaNCGNHNBL_14 - Region 1 - NRPS

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Location: 52,220 - 92,262 nt. (total: 40,043 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: cds(Condensation and (AMP-binding or A-OX))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Gene overview

NRPS/PKS domains

KnownClusterBlast

NRPS/PKS modules

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Detailed domain annotation

Selected features only

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Similar known gene clusters from MIBiG 3.1

Module view

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NRPS/PKS products

NRPS/PKS substrates

Predicted core structure(s)

For candidate cluster 1, location 52219 - 92262:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (Thr)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS substrate predictions

ctg14_73

Search NORINE for peptide: strict or relaxed

AMP-binding (447..839): Thr

nrpys: Thr

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
Large clusters prediction:: N/A
Small clusters prediction:: thr (Thr)
Single AA prediction:: thr (Thr)

Stachelhaus prediction details:

Stachelhaus sequence:: DYFTLGLVVK
Nearest Stachelhaus code(s):: Leu DYFTFGLIIK (68% 8Å match); OMe-Trp DAFTLGCVFK (56% 8Å match)
Stachelhaus code match:: 70% (weak)