GCA_040428825.1 - 5 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

gnlProkkaHNACDEBD_1 (original name was: gnl|Prokka|HNACDEBD_1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 1.1	RiPP-like	890,295	902,460
Region 1.2	RiPP-like	913,842	930,501	gassericin T	RiPP	44%
Region 1.3	LAP	1,178,500	1,201,612	listeriolysin S	RiPP:LAP	25%

gnlProkkaHNACDEBD_4 (original name was: gnl|Prokka|HNACDEBD_4)

Region	Type	From	To	Most similar known cluster		Similarity
Region 4.1	RiPP-like	1	3,579	gassericin T	RiPP	33%

gnlProkkaHNACDEBD_13 (original name was: gnl|Prokka|HNACDEBD_13)

Region	Type	From	To	Most similar known cluster		Similarity
Region 13.1	RiPP-like	204,429	215,364

Region	Type	From	To	Most similar known cluster	Similarity
Region 1.1	RiPP-like	890,295	902,460
Region 1.2	RiPP-like	913,842	930,501	gassericin T	RiPP	44%
Region 1.3	LAP	1,178,500	1,201,612	listeriolysin S	RiPP:LAP	25%
Region 4.1	RiPP-like	1	3,579	gassericin T	RiPP	33%
Region 13.1	RiPP-like	204,429	215,364

No secondary metabolite regions were found in these records:: gnlProkkaHNACDEBD_2 (original name was: gnl|Prokka|HNACDEBD_2); gnlProkkaHNACDEBD_3 (original name was: gnl|Prokka|HNACDEBD_3); gnlProkkaHNACDEBD_5 (original name was: gnl|Prokka|HNACDEBD_5); gnlProkkaHNACDEBD_6 (original name was: gnl|Prokka|HNACDEBD_6); gnlProkkaHNACDEBD_7 (original name was: gnl|Prokka|HNACDEBD_7); gnlProkkaHNACDEBD_8 (original name was: gnl|Prokka|HNACDEBD_8); gnlProkkaHNACDEBD_9 (original name was: gnl|Prokka|HNACDEBD_9); gnlProkkaHNACDEBD_10 (original name was: gnl|Prokka|HNACDEBD_10); gnlProkkaHNACDEBD_11 (original name was: gnl|Prokka|HNACDEBD_11); gnlProkkaHNACDEBD_12 (original name was: gnl|Prokka|HNACDEBD_12); gnlProkkaHNACDEBD_14 (original name was: gnl|Prokka|HNACDEBD_14); gnlProkkaHNACDEBD_15 (original name was: gnl|Prokka|HNACDEBD_15); gnlProkkaHNACDEBD_16 (original name was: gnl|Prokka|HNACDEBD_16); gnlProkkaHNACDEBD_17 (original name was: gnl|Prokka|HNACDEBD_17); gnlProkkaHNACDEBD_18 (original name was: gnl|Prokka|HNACDEBD_18); gnlProkkaHNACDEBD_19 (original name was: gnl|Prokka|HNACDEBD_19); gnlProkkaHNACDEBD_20 (original name was: gnl|Prokka|HNACDEBD_20); gnlProkkaHNACDEBD_21 (original name was: gnl|Prokka|HNACDEBD_21); gnlProkkaHNACDEBD_22 (original name was: gnl|Prokka|HNACDEBD_22); gnlProkkaHNACDEBD_23 (original name was: gnl|Prokka|HNACDEBD_23); gnlProkkaHNACDEBD_24 (original name was: gnl|Prokka|HNACDEBD_24)

Compact view

gnlProkkaHNACDEBD_1 - Region 1 - RiPP-like

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Location: 890,295 - 902,460 nt. (total: 12,166 nt) Show pHMM detection rules used

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193 or (YcaO or TIGR03604))

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

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other genes

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaHNACDEBD_1 - Region 2 - RiPP-like

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Location: 913,842 - 930,501 nt. (total: 16,660 nt) Show pHMM detection rules used

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193 or (YcaO or TIGR03604))

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Gene overview

KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

gnlProkkaHNACDEBD_1 - Region 3 - LAP

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Location: 1,178,500 - 1,201,612 nt. (total: 23,113 nt) Show pHMM detection rules used

LAP: ((((goadsporin_like or PF00881 or TIGR03605) and (YcaO or TIGR03604)) or TIGR03882 or TIGR03603 or TIGR03602) and not cyanobactin_synth)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Gene overview

KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

gnlProkkaHNACDEBD_4 - Region 1 - RiPP-like

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Location: 1 - 3,579 nt. (total: 3,579 nt) Show pHMM detection rules used

Region on contig edge.

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193 or (YcaO or TIGR03604))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

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Gene details

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Gene overview

KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

gnlProkkaHNACDEBD_13 - Region 1 - RiPP-like

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Location: 204,429 - 215,364 nt. (total: 10,936 nt) Show pHMM detection rules used

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193 or (YcaO or TIGR03604))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

Gene overview

KnownClusterBlast

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.