GCA_040448705.1 - 4 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

gnlProkkaHPJIGCHD_1 (original name was: gnl|Prokka|HPJIGCHD_1)

Region	Type	From	To
Region 1.1	T3PKS	1,285,352	1,326,521
Region 1.2	terpene	2,771,847	2,792,728
Region 1.3	cyclic-lactone-autoinducer	2,995,668	3,016,373

gnlProkkaHPJIGCHD_10 (original name was: gnl|Prokka|HPJIGCHD_10)

Region	Type	From	To	Most similar known cluster		Similarity
Region 10.1	hglE-KS	1	41,271

Region	Type	From	To	Similarity
Region 1.1	T3PKS	1,285,352	1,326,521
Region 1.2	terpene	2,771,847	2,792,728
Region 1.3	cyclic-lactone-autoinducer	2,995,668	3,016,373
Region 10.1	hglE-KS	1	41,271

No secondary metabolite regions were found in these records:: gnlProkkaHPJIGCHD_2 (original name was: gnl|Prokka|HPJIGCHD_2); gnlProkkaHPJIGCHD_3 (original name was: gnl|Prokka|HPJIGCHD_3); gnlProkkaHPJIGCHD_4 (original name was: gnl|Prokka|HPJIGCHD_4); gnlProkkaHPJIGCHD_5 (original name was: gnl|Prokka|HPJIGCHD_5); gnlProkkaHPJIGCHD_6 (original name was: gnl|Prokka|HPJIGCHD_6); gnlProkkaHPJIGCHD_7 (original name was: gnl|Prokka|HPJIGCHD_7); gnlProkkaHPJIGCHD_8 (original name was: gnl|Prokka|HPJIGCHD_8); gnlProkkaHPJIGCHD_9 (original name was: gnl|Prokka|HPJIGCHD_9); gnlProkkaHPJIGCHD_11 (original name was: gnl|Prokka|HPJIGCHD_11); gnlProkkaHPJIGCHD_12 (original name was: gnl|Prokka|HPJIGCHD_12); gnlProkkaHPJIGCHD_13 (original name was: gnl|Prokka|HPJIGCHD_13); gnlProkkaHPJIGCHD_14 (original name was: gnl|Prokka|HPJIGCHD_14); gnlProkkaHPJIGCHD_15 (original name was: gnl|Prokka|HPJIGCHD_15)

Compact view

gnlProkkaHPJIGCHD_1 - Region 1 - T3PKS

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Location: 1,285,352 - 1,326,521 nt. (total: 41,170 nt) Show pHMM detection rules used

T3PKS: (Chal_sti_synt_C or Chal_sti_synt_N)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Gene overview

NRPS/PKS domains

KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Detailed domain annotation

Selected features only

Show module domains

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaHPJIGCHD_1 - Region 2 - terpene

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Location: 2,771,847 - 2,792,728 nt. (total: 20,882 nt) Show pHMM detection rules used

terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

Gene overview

KnownClusterBlast

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaHPJIGCHD_1 - Region 3 - cyclic-lactone-autoinducer

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Location: 2,995,668 - 3,016,373 nt. (total: 20,706 nt) Show pHMM detection rules used

cyclic-lactone-autoinducer: (TIGR04223 or AgrB)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

Gene overview

KnownClusterBlast

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaHPJIGCHD_10 - Region 1 - hglE-KS

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Location: 1 - 41,271 nt. (total: 41,271 nt) Show pHMM detection rules used

Region on contig edge.

hglE-KS: (hglE or hglD)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

Gene overview

NRPS/PKS domains

KnownClusterBlast

NRPS/PKS modules

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Detailed domain annotation

Selected features only

Show module domains

Similar known gene clusters from MIBiG 3.1

No matches found.

Module view

Legend

NRPS/PKS products

NRPS/PKS substrates

Predicted core structure(s)

For candidate cluster 1, location 0 - 41271:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (mal)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS substrate predictions

ctg10_22

PKS_AT (28..317): mal

ATSignature: Malonyl-CoA

Top 3 matches:: Malonyl-CoA: 58.3%

minowa: Malonyl-CoA

Prediction, score:

Malonyl-CoA: 33.7
Methylmalonyl-CoA: 20.8
Methoxymalonyl-CoA: 20.4
Propionyl-CoA: 19.1
inactive: 13.4
CHC-CoA: 13.3
2-Methylbutyryl-CoA: 11.9
Ethylmalonyl-CoA: 8.3
trans-1,2-CPDA: 0.0
fatty_acid: 0.0
Isobutyryl-CoA: 0.0
Benzoyl-CoA: 0.0
Acetyl-CoA: 0.0
3-Methylbutyryl-CoA: 0.0