GCA_040784965.1 - 7 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

gnlProkkaONOMJNGG_4 (original name was: gnl|Prokka|ONOMJNGG_4)

Region	Type	From	To	Most similar known cluster		Similarity
Region 4.1	RaS-RiPP	1	18,100

gnlProkkaONOMJNGG_6 (original name was: gnl|Prokka|ONOMJNGG_6)

Region	Type	From	To	Most similar known cluster		Similarity
Region 6.1	lanthipeptide-class-i	14,094	38,147

gnlProkkaONOMJNGG_11 (original name was: gnl|Prokka|ONOMJNGG_11)

Region	Type	From	To	Most similar known cluster		Similarity
Region 11.1	RiPP-like	86,373	105,321

gnlProkkaONOMJNGG_16 (original name was: gnl|Prokka|ONOMJNGG_16)

Region	Type	From	To	Most similar known cluster		Similarity
Region 16.1	lanthipeptide-class-iv	3,373	17,679

gnlProkkaONOMJNGG_18 (original name was: gnl|Prokka|ONOMJNGG_18)

Region	Type	From	To	Most similar known cluster		Similarity
Region 18.1	RaS-RiPP	1	15,400	streptide	RiPP	75%

gnlProkkaONOMJNGG_33 (original name was: gnl|Prokka|ONOMJNGG_33)

Region	Type	From	To	Most similar known cluster		Similarity
Region 33.1	RiPP-like	73,096	90,862	ubericin K	Other	12%

gnlProkkaONOMJNGG_44 (original name was: gnl|Prokka|ONOMJNGG_44)

Region	Type	From	To	Most similar known cluster		Similarity
Region 38.1	NRPS-like	8,190	51,081	asukamycin	Polyketide:Type II polyketide	4%

Region	Type	From	To	Most similar known cluster	Similarity
Region 4.1	RaS-RiPP	1	18,100
Region 6.1	lanthipeptide-class-i	14,094	38,147
Region 11.1	RiPP-like	86,373	105,321
Region 16.1	lanthipeptide-class-iv	3,373	17,679
Region 18.1	RaS-RiPP	1	15,400	streptide	RiPP	75%
Region 33.1	RiPP-like	73,096	90,862	ubericin K	Other	12%
Region 38.1	NRPS-like	8,190	51,081	asukamycin	Polyketide:Type II polyketide	4%

Compact view

gnlProkkaONOMJNGG_4 - Region 1 - RaS-RiPP

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Location: 1 - 18,100 nt. (total: 18,100 nt) Show pHMM detection rules used

Region on contig edge.

RaS-RiPP: (PF04055 and TIGR01716)

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core biosynthetic genes

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KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaONOMJNGG_6 - Region 1 - lanthipeptide-class-i

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Location: 14,094 - 38,147 nt. (total: 24,054 nt) Show pHMM detection rules used

lanthipeptide-class-i: ((LANC_like and (Lant_dehydr_N or Lant_dehydr_C)) and not (YcaO or TIGR03604))

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

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resistance

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KnownClusterBlast

Lanthipeptides

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

Lanthipeptide predictions

Lanthipeptides - No core peptides found.

Lanthipeptides

Core peptide predictions

No core peptides found.

gnlProkkaONOMJNGG_11 - Region 1 - RiPP-like

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Location: 86,373 - 105,321 nt. (total: 18,949 nt) Show pHMM detection rules used

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193 or (YcaO or TIGR03604))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaONOMJNGG_16 - Region 1 - lanthipeptide-class-iv

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Location: 3,373 - 17,679 nt. (total: 14,307 nt) Show pHMM detection rules used

Region on contig edge.

lanthipeptide-class-iv: (cds(LANC_like and Pkinase) and not micKC)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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KnownClusterBlast

Lanthipeptides

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

Lanthipeptide predictions

Lanthipeptides - No core peptides found.

Lanthipeptides

Core peptide predictions

No core peptides found.

gnlProkkaONOMJNGG_18 - Region 1 - RaS-RiPP

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Location: 1 - 15,400 nt. (total: 15,400 nt) Show pHMM detection rules used

Region on contig edge.

RaS-RiPP: (PF04055 and TIGR01716)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Gene overview

KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

gnlProkkaONOMJNGG_33 - Region 1 - RiPP-like

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Location: 73,096 - 90,862 nt. (total: 17,767 nt) Show pHMM detection rules used

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193 or (YcaO or TIGR03604))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Gene overview

KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

gnlProkkaONOMJNGG_44 - Region 1 - NRPS-like

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Location: 8,190 - 51,081 nt. (total: 42,892 nt) Show pHMM detection rules used

NRPS-like: cds((PP-binding or NAD_binding_4) and (AMP-binding or A-OX))

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

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resistance

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NRPS/PKS domains

KnownClusterBlast

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Detailed domain annotation

Selected features only

Show module domains

Similar known gene clusters from MIBiG 3.1

NRPS/PKS substrates

NRPS/PKS substrate predictions

ctg38_31

Search NORINE for peptide: strict or relaxed

AMP-binding (6..388): Ala

nrpys: Ala

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
Large clusters prediction:: N/A
Small clusters prediction:: Tiny, hydrophilic, transition to aliphatic (Gly, Ala)
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DVTSCALIYK
Nearest Stachelhaus code(s):: Ala DVTNFALIYK (62% 8Å match)
Stachelhaus code match:: 80% (moderate)