GCA_040822615.1 - 7 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

gnlProkkaFLPLINNB_1 (original name was: gnl|Prokka|FLPLINNB_1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 1.1	RaS-RiPP	69,463	91,887	streptide	RiPP	100%
Region 1.2	RiPP-like	336,938	355,869

gnlProkkaFLPLINNB_2 (original name was: gnl|Prokka|FLPLINNB_2)

Region	Type	From	To	Most similar known cluster		Similarity
Region 2.1	RRE-containing	148,617	168,583	streptozotocin	Other	7%

gnlProkkaFLPLINNB_6 (original name was: gnl|Prokka|FLPLINNB_6)

Region	Type	From	To	Most similar known cluster		Similarity
Region 6.1	lanthipeptide-class-iv	76,753	90,281

gnlProkkaFLPLINNB_7 (original name was: gnl|Prokka|FLPLINNB_7)

Region	Type	From	To	Most similar known cluster		Similarity
Region 7.1	NRPS-like	30,254	73,145	asukamycin	Polyketide:Type II polyketide	4%

gnlProkkaFLPLINNB_11 (original name was: gnl|Prokka|FLPLINNB_11)

Region	Type	From	To	Most similar known cluster		Similarity
Region 11.1	RaS-RiPP	1	17,931

gnlProkkaFLPLINNB_12 (original name was: gnl|Prokka|FLPLINNB_12)

Region	Type	From	To	Most similar known cluster		Similarity
Region 12.1	lanthipeptide-class-i	14,040	38,093

No secondary metabolite regions were found in these records:: gnlProkkaFLPLINNB_3 (original name was: gnl|Prokka|FLPLINNB_3); gnlProkkaFLPLINNB_4 (original name was: gnl|Prokka|FLPLINNB_4); gnlProkkaFLPLINNB_5 (original name was: gnl|Prokka|FLPLINNB_5); gnlProkkaFLPLINNB_8 (original name was: gnl|Prokka|FLPLINNB_8); gnlProkkaFLPLINNB_9 (original name was: gnl|Prokka|FLPLINNB_9); gnlProkkaFLPLINNB_10 (original name was: gnl|Prokka|FLPLINNB_10); gnlProkkaFLPLINNB_13 (original name was: gnl|Prokka|FLPLINNB_13); gnlProkkaFLPLINNB_14 (original name was: gnl|Prokka|FLPLINNB_14); gnlProkkaFLPLINNB_15 (original name was: gnl|Prokka|FLPLINNB_15); gnlProkkaFLPLINNB_16 (original name was: gnl|Prokka|FLPLINNB_16); gnlProkkaFLPLINNB_17 (original name was: gnl|Prokka|FLPLINNB_17); gnlProkkaFLPLINNB_18 (original name was: gnl|Prokka|FLPLINNB_18); gnlProkkaFLPLINNB_19 (original name was: gnl|Prokka|FLPLINNB_19); gnlProkkaFLPLINNB_20 (original name was: gnl|Prokka|FLPLINNB_20); gnlProkkaFLPLINNB_21 (original name was: gnl|Prokka|FLPLINNB_21); gnlProkkaFLPLINNB_22 (original name was: gnl|Prokka|FLPLINNB_22); gnlProkkaFLPLINNB_23 (original name was: gnl|Prokka|FLPLINNB_23); gnlProkkaFLPLINNB_24 (original name was: gnl|Prokka|FLPLINNB_24); gnlProkkaFLPLINNB_25 (original name was: gnl|Prokka|FLPLINNB_25); gnlProkkaFLPLINNB_26 (original name was: gnl|Prokka|FLPLINNB_26); gnlProkkaFLPLINNB_27 (original name was: gnl|Prokka|FLPLINNB_27); gnlProkkaFLPLINNB_28 (original name was: gnl|Prokka|FLPLINNB_28); gnlProkkaFLPLINNB_29 (original name was: gnl|Prokka|FLPLINNB_29); gnlProkkaFLPLINNB_30 (original name was: gnl|Prokka|FLPLINNB_30); gnlProkkaFLPLINNB_31 (original name was: gnl|Prokka|FLPLINNB_31); gnlProkkaFLPLINNB_32 (original name was: gnl|Prokka|FLPLINNB_32); gnlProkkaFLPLINNB_33 (original name was: gnl|Prokka|FLPLINNB_33)

Compact view

gnlProkkaFLPLINNB_1 - Region 1 - RaS-RiPP

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Location: 69,463 - 91,887 nt. (total: 22,425 nt) Show pHMM detection rules used

RaS-RiPP: (PF04055 and TIGR01716)

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KnownClusterBlast

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

gnlProkkaFLPLINNB_1 - Region 2 - RiPP-like

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Location: 336,938 - 355,869 nt. (total: 18,932 nt) Show pHMM detection rules used

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193 or (YcaO or TIGR03604))

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

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resistance

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KnownClusterBlast

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaFLPLINNB_2 - Region 1 - RRE-containing

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Location: 148,617 - 168,583 nt. (total: 19,967 nt) Show pHMM detection rules used

Region on contig edge.

RRE-containing: minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE])

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

gnlProkkaFLPLINNB_6 - Region 1 - lanthipeptide-class-iv

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Location: 76,753 - 90,281 nt. (total: 13,529 nt) Show pHMM detection rules used

Region on contig edge.

lanthipeptide-class-iv: (cds(LANC_like and Pkinase) and not micKC)

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core biosynthetic genes

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KnownClusterBlast

Lanthipeptides

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

Lanthipeptide predictions

Lanthipeptides - No core peptides found.

Lanthipeptides

Core peptide predictions

No core peptides found.

gnlProkkaFLPLINNB_7 - Region 1 - NRPS-like

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Location: 30,254 - 73,145 nt. (total: 42,892 nt) Show pHMM detection rules used

NRPS-like: cds((PP-binding or NAD_binding_4) and (AMP-binding or A-OX))

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core biosynthetic genes

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NRPS/PKS domains

KnownClusterBlast

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Detailed domain annotation

Selected features only

Show module domains

Similar known gene clusters from MIBiG 3.1

NRPS/PKS substrates

NRPS/PKS substrate predictions

ctg7_59

Search NORINE for peptide: strict or relaxed

AMP-binding (6..388): Ala

nrpys: Ala

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
Large clusters prediction:: N/A
Small clusters prediction:: Tiny, hydrophilic, transition to aliphatic (Gly, Ala)
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DVTSCALIYK
Nearest Stachelhaus code(s):: Ala DVTNFALIYK (62% 8Å match)
Stachelhaus code match:: 80% (moderate)

gnlProkkaFLPLINNB_11 - Region 1 - RaS-RiPP

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Location: 1 - 17,931 nt. (total: 17,931 nt) Show pHMM detection rules used

Region on contig edge.

RaS-RiPP: (PF04055 and TIGR01716)

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaFLPLINNB_12 - Region 1 - lanthipeptide-class-i

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Location: 14,040 - 38,093 nt. (total: 24,054 nt) Show pHMM detection rules used

Region on contig edge.

lanthipeptide-class-i: ((LANC_like and (Lant_dehydr_N or Lant_dehydr_C)) and not (YcaO or TIGR03604))

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Gene overview

KnownClusterBlast

Lanthipeptides

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

Lanthipeptide predictions

Lanthipeptides - No core peptides found.

Lanthipeptides

Core peptide predictions

No core peptides found.