GCA_041431825.1 - 5 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

gnlProkkaHLKJGPCH_1 (original name was: gnl|Prokka|HLKJGPCH_1)

Region	Type	From	To
Region 1.1	T3PKS	1	40,405
Region 1.2	RiPP-like	199,609	209,905
Region 1.3	RiPP-like	284,975	312,037

gnlProkkaHLKJGPCH_4 (original name was: gnl|Prokka|HLKJGPCH_4)

Region	Type	From	To	Most similar known cluster		Similarity
Region 4.1	RiPP-like	53,740	65,836	quinolidomicin A	Polyketide	3%

gnlProkkaHLKJGPCH_5 (original name was: gnl|Prokka|HLKJGPCH_5)

Region	Type	From	To	Most similar known cluster		Similarity
Region 5.1	LAP,thiopeptide	159,155	177,341

Region	Type	From	To	Most similar known cluster	Similarity
Region 1.1	T3PKS	1	40,405
Region 1.2	RiPP-like	199,609	209,905
Region 1.3	RiPP-like	284,975	312,037
Region 4.1	RiPP-like	53,740	65,836	quinolidomicin A	Polyketide	3%
Region 5.1	LAP,thiopeptide	159,155	177,341

No secondary metabolite regions were found in these records:: gnlProkkaHLKJGPCH_2 (original name was: gnl|Prokka|HLKJGPCH_2); gnlProkkaHLKJGPCH_3 (original name was: gnl|Prokka|HLKJGPCH_3); gnlProkkaHLKJGPCH_6 (original name was: gnl|Prokka|HLKJGPCH_6); gnlProkkaHLKJGPCH_7 (original name was: gnl|Prokka|HLKJGPCH_7); gnlProkkaHLKJGPCH_8 (original name was: gnl|Prokka|HLKJGPCH_8); gnlProkkaHLKJGPCH_9 (original name was: gnl|Prokka|HLKJGPCH_9); gnlProkkaHLKJGPCH_10 (original name was: gnl|Prokka|HLKJGPCH_10); gnlProkkaHLKJGPCH_11 (original name was: gnl|Prokka|HLKJGPCH_11); gnlProkkaHLKJGPCH_12 (original name was: gnl|Prokka|HLKJGPCH_12); gnlProkkaHLKJGPCH_13 (original name was: gnl|Prokka|HLKJGPCH_13); gnlProkkaHLKJGPCH_14 (original name was: gnl|Prokka|HLKJGPCH_14); gnlProkkaHLKJGPCH_15 (original name was: gnl|Prokka|HLKJGPCH_15); gnlProkkaHLKJGPCH_16 (original name was: gnl|Prokka|HLKJGPCH_16); gnlProkkaHLKJGPCH_17 (original name was: gnl|Prokka|HLKJGPCH_17); gnlProkkaHLKJGPCH_18 (original name was: gnl|Prokka|HLKJGPCH_18); gnlProkkaHLKJGPCH_19 (original name was: gnl|Prokka|HLKJGPCH_19); gnlProkkaHLKJGPCH_20 (original name was: gnl|Prokka|HLKJGPCH_20); gnlProkkaHLKJGPCH_21 (original name was: gnl|Prokka|HLKJGPCH_21); gnlProkkaHLKJGPCH_22 (original name was: gnl|Prokka|HLKJGPCH_22); gnlProkkaHLKJGPCH_23 (original name was: gnl|Prokka|HLKJGPCH_23); gnlProkkaHLKJGPCH_24 (original name was: gnl|Prokka|HLKJGPCH_24); gnlProkkaHLKJGPCH_25 (original name was: gnl|Prokka|HLKJGPCH_25); gnlProkkaHLKJGPCH_26 (original name was: gnl|Prokka|HLKJGPCH_26); gnlProkkaHLKJGPCH_27 (original name was: gnl|Prokka|HLKJGPCH_27); gnlProkkaHLKJGPCH_28 (original name was: gnl|Prokka|HLKJGPCH_28); gnlProkkaHLKJGPCH_29 (original name was: gnl|Prokka|HLKJGPCH_29); gnlProkkaHLKJGPCH_30 (original name was: gnl|Prokka|HLKJGPCH_30); gnlProkkaHLKJGPCH_31 (original name was: gnl|Prokka|HLKJGPCH_31); gnlProkkaHLKJGPCH_32 (original name was: gnl|Prokka|HLKJGPCH_32); gnlProkkaHLKJGPCH_33 (original name was: gnl|Prokka|HLKJGPCH_33); gnlProkkaHLKJGPCH_34 (original name was: gnl|Prokka|HLKJGPCH_34); gnlProkkaHLKJGPCH_35 (original name was: gnl|Prokka|HLKJGPCH_35); gnlProkkaHLKJGPCH_36 (original name was: gnl|Prokka|HLKJGPCH_36); gnlProkkaHLKJGPCH_37 (original name was: gnl|Prokka|HLKJGPCH_37); gnlProkkaHLKJGPCH_38 (original name was: gnl|Prokka|HLKJGPCH_38); gnlProkkaHLKJGPCH_39 (original name was: gnl|Prokka|HLKJGPCH_39); gnlProkkaHLKJGPCH_40 (original name was: gnl|Prokka|HLKJGPCH_40); gnlProkkaHLKJGPCH_41 (original name was: gnl|Prokka|HLKJGPCH_41); gnlProkkaHLKJGPCH_42 (original name was: gnl|Prokka|HLKJGPCH_42); gnlProkkaHLKJGPCH_43 (original name was: gnl|Prokka|HLKJGPCH_43)

Compact view

gnlProkkaHLKJGPCH_1 - Region 1 - T3PKS

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Location: 1 - 40,405 nt. (total: 40,405 nt) Show pHMM detection rules used

Region on contig edge.

T3PKS: (Chal_sti_synt_C or Chal_sti_synt_N)

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

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Gene overview

NRPS/PKS domains

KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Detailed domain annotation

Selected features only

Show module domains

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaHLKJGPCH_1 - Region 2 - RiPP-like

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Location: 199,609 - 209,905 nt. (total: 10,297 nt) Show pHMM detection rules used

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193 or (YcaO or TIGR03604))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Gene overview

KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaHLKJGPCH_1 - Region 3 - RiPP-like

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Location: 284,975 - 312,037 nt. (total: 27,063 nt) Show pHMM detection rules used

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193 or (YcaO or TIGR03604))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Gene overview

KnownClusterBlast

Gene/CDS overview

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Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaHLKJGPCH_4 - Region 1 - RiPP-like

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Location: 53,740 - 65,836 nt. (total: 12,097 nt) Show pHMM detection rules used

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193 or (YcaO or TIGR03604))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Gene overview

KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

gnlProkkaHLKJGPCH_5 - Region 1 - LAP,thiopeptide

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Location: 159,155 - 177,341 nt. (total: 18,187 nt) Show pHMM detection rules used

Region on contig edge.

LAP: ((((goadsporin_like or PF00881 or TIGR03605) and (YcaO or TIGR03604)) or TIGR03882 or TIGR03603 or TIGR03602) and not cyanobactin_synth)
thiopeptide: ((YcaO or TIGR03604) and ((thio_amide and (PF06968 or PF04055 or PF07366)) or Lant_dehydr_C or Lant_dehydr_N or PF07366 or PF06968 or PF04055) or thiostrepton)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Gene overview

KnownClusterBlast

Thiopeptides

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

Thiopeptide predictions

No core peptides found.

Thiopeptides

Core peptide predictions

No core peptides found.