Rank	Genome ID	Species	Strain	BioSample ID	Date	Location	Host	Allelic distance	ARGs	VFs	PGs	PPRS
1	GCA_041511495.1	Streptococcus thermophilus	S24746	SAMN18478715	2019	Switzerland	-	0	0	25	28	37.54
2	GCA_025187415.1	Streptococcus thermophilus	CIRM-BIA 24	SAMN10365638	1959	France	-	333	0	18	31	35.85
3	GCA_025187305.1	Streptococcus thermophilus	CIRM-BIA 32	SAMN10365643	1964	France	-	369	0	18	33	37.59
4	GCA_903886345.1	Streptococcus thermophilus	-	SAMEA6957292	1964	France	-	369	0	18	29	34.13
5	GCA_025187365.1	Streptococcus thermophilus	CIRM-BIA 18	SAMN10365640	1964	France	-	372	0	18	33	37.59
6	GCA_039783625.1	Streptococcus thermophilus	CNRZ302	SAMN16933247	1995	Ireland	-	372	0	18	29	34.13
7	GCA_903885985.1	Streptococcus thermophilus	-	SAMEA6957286	1964	France	-	372	0	18	29	34.13
8	GCA_025187385.1	Streptococcus thermophilus	CIRM-BIA 19	SAMN10365641	1963	France	-	376	0	25	33	41.40
9	GCA_025187485.1	Streptococcus thermophilus	CIRM-BIA 2104	SAMN10365635	1993	France	-	377	0	18	33	37.59
10	GCA_903886075.1	Streptococcus thermophilus	-	SAMEA6957287	1963	France	-	377	0	25	29	38.29
11	GCA_041513585.1	Streptococcus thermophilus	S24742	SAMN18478712	2019	Switzerland	-	394	0	25	29	38.29
12	GCA_017367065.1	Streptococcus thermophilus	24854	SAMN15923551	2019	Switzerland	-	401	0	25	28	37.54
13	GCA_017367285.1	Streptococcus thermophilus	13492	SAMN15923535	1984	Switzerland	-	401	0	25	32	40.61
14	GCA_017367305.1	Streptococcus thermophilus	13493	SAMN15923536	1984	Switzerland	-	401	0	25	32	40.61
15	GCA_017367345.1	Streptococcus thermophilus	13491	SAMN15923534	1984	Switzerland	-	401	0	25	32	40.61
16	GCA_022509625.1	Streptococcus thermophilus	QAUSTN63	SAMN22187333	2018	-	-	401	0	25	32	40.61
17	GCA_025187005.1	Streptococcus thermophilus	CIRM-BIA 1358	SAMN10365653	1974	France	-	401	0	28	32	42.52
18	GCA_903891245.1	Streptococcus thermophilus	-	SAMEA6957284	1974	France	-	401	0	28	28	39.60
19	GCA_017360245.1	Streptococcus thermophilus	13498	SAMN15923541	1984	Switzerland	-	402	0	25	28	37.54
20	GCA_017584245.1	Streptococcus thermophilus	MAG_rmk202_sterm	SAMN13284972	2019-02-11	Switzerland:Liebefeld	-	402	0	25	28	37.54
21	GCA_042187255.1	Streptococcus thermophilus	S24741	SAMN18490525	2019	Switzerland	-	402	0	25	33	41.40
22	GCA_017359825.1	Streptococcus thermophilus	24853	SAMN15923550	2019	Switzerland	-	403	0	25	29	38.29
23	GCA_017367005.1	Streptococcus thermophilus	24737	SAMN15923546	2019	Switzerland	-	403	0	25	28	37.54
24	GCA_017367045.1	Streptococcus thermophilus	13500	SAMN15923545	1984	Switzerland	-	403	0	25	32	40.61
25	GCA_017366965.1	Streptococcus thermophilus	S72	SAMN15923554	2019	Switzerland	-	413	0	25	33	41.40
26	GCA_017367225.1	Streptococcus thermophilus	13494	SAMN15923537	1984	Switzerland	-	415	0	25	29	38.29
27	GCA_017366985.1	Streptococcus thermophilus	24855	SAMN15923552	2019	Switzerland	-	417	0	25	29	38.29
28	GCA_002012365.1	Streptococcus thermophilus	APC151	SAMN06349996	2015-02-13	Ireland	fish	434	0	22	29	36.40
29	GCA_020075895.1	Streptococcus thermophilus	CF2_14	SAMN06464117	2016-10-15	USA:MD	Homo sapiens	434	0	22	33	39.66
30	GCA_903891025.1	Streptococcus thermophilus	-	SAMEA6957279	1990	France	-	434	0	22	29	36.40
31	GCA_020829085.1	Streptococcus thermophilus	B2	SAMN18523655	2019	Ireland: Cork City	-	435	0	22	33	39.66
32	GCA_020829095.1	Streptococcus thermophilus	B9	SAMN18713787	2020	Ireland: Cork	-	435	0	22	33	39.66
33	GCA_020829125.1	Streptococcus thermophilus	B1	SAMN18523653	2019	Ireland: Cork city	-	435	0	22	33	39.66
34	GCA_020844005.1	Streptococcus thermophilus	4078	SAMN16933231	1996	Ireland	-	435	0	22	29	36.40
35	GCA_025187665.1	Streptococcus thermophilus	CIRM-BIA 1055	SAMN10365626	1990	France	-	435	0	22	33	39.66
36	GCA_000182875.1	Streptococcus thermophilus ND03	ND03	SAMN02603938	-	-	-	436	0	22	29	36.40
37	GCA_001266475.1	Streptococcus thermophilus	KLDS3.1012	SAMN03957073	2009-02-02	China: Inner Mongolia	-	436	0	22	29	36.40
38	GCA_003129655.1	Streptococcus thermophilus	KU30	SAMN09099014	2009-10-01	China:Hebei	-	436	0	22	32	38.83
39	GCA_020829055.1	Streptococcus thermophilus	B4	SAMN18713779	2019	Ireland: Cork	-	436	0	22	33	39.66
40	GCA_019449755.1	Streptococcus thermophilus	Brie1	SAMN19116153	2020-11-09	Ireland	-	437	0	22	33	39.66
41	GCA_025187465.1	Streptococcus thermophilus	CIRM-BIA 1058	SAMN10365637	1995	France	-	438	0	22	33	39.66
42	GCA_041512935.1	Streptococcus thermophilus	S24743	SAMN18478713	2019	Switzerland	-	445	0	27	29	39.62
43	GCA_025188845.1	Streptococcus thermophilus	CIRM-BIA 246	SAMN10365557	2008	France	-	457	0	22	33	39.66
44	GCA_019449765.1	Streptococcus thermophilus	Vach60	SAMN19116190	2020-11-09	Ireland	-	458	0	22	33	39.66
45	GCA_019449675.1	Streptococcus thermophilus	Vach57	SAMN19116181	2020-11-09	Ireland	-	460	0	23	33	40.22
46	GCA_025187085.1	Streptococcus thermophilus	CIRM-BIA 1035	SAMN10365651	1973	France	-	501	0	25	33	41.40
47	GCA_903890815.1	Streptococcus thermophilus	-	SAMEA6957272	1973	France	-	501	0	25	29	38.29
48	GCA_025129195.1	Streptococcus thermophilus	977	SAMN10365141	1981	Switzerland	-	504	0	27	35	44.20
49	GCA_025132855.1	Streptococcus thermophilus	973	SAMN10365138	1980	Switzerland	-	504	0	27	35	44.20
50	GCA_041509385.1	Streptococcus thermophilus	S24750	SAMN18478718	2019	Switzerland	-	504	0	27	31	41.11
51	GCA_041514295.1	Streptococcus thermophilus	S24732	SAMN18478707	2019	Switzerland	-	504	0	27	31	41.11
52	GCA_041893975.1	Streptococcus thermophilus	S24748	SAMN18490527	2019	Switzerland	-	504	0	27	31	41.11
53	GCA_042187295.1	Streptococcus thermophilus	S24731	SAMN18490524	2019	Switzerland	-	504	0	27	35	44.20
54	GCA_025127235.1	Streptococcus thermophilus	979	SAMN10365143	1981	Switzerland	-	505	0	27	35	44.20
55	GCA_025127245.1	Streptococcus thermophilus	980	SAMN10365144	1981	Switzerland	-	505	0	27	35	44.20
56	GCA_025132835.1	Streptococcus thermophilus	974	SAMN10365139	1980	Switzerland	-	505	0	27	35	44.20
57	GCA_041514285.1	Streptococcus thermophilus	S24733	SAMN18478708	2019	Switzerland	-	505	0	27	31	41.11
58	GCA_017360005.1	Streptococcus thermophilus	24739	SAMN15923548	1984	Switzerland	-	509	0	25	29	38.29
59	GCA_017367105.1	Streptococcus thermophilus	13497	SAMN15923540	1984	Switzerland	-	509	0	25	33	41.40
60	GCA_005864465.1	Streptococcus thermophilus	FAM 13496	SAMN11653956	1988	Switzerland	-	510	0	25	33	41.40
61	GCA_017360305.1	Streptococcus thermophilus	13496	SAMN15923539	1984	Switzerland	-	510	0	25	29	38.29
62	GCA_025127255.1	Streptococcus thermophilus	978	SAMN10365142	1981	Switzerland	-	510	0	27	35	44.20
63	GCA_042187225.1	Streptococcus thermophilus	S24744	SAMN18490526	2019	Switzerland	-	513	0	25	33	41.40
64	GCA_019449885.1	Streptococcus thermophilus	Nect1	SAMN19136548	2020-11-09	Ireland	-	514	0	25	33	41.40
65	GCA_041512205.1	Streptococcus thermophilus	S24745	SAMN18478714	2019	Switzerland	-	514	0	25	29	38.29
66	GCA_042187285.1	Streptococcus thermophilus	S24729	SAMN18490523	2019	Switzerland	-	514	0	28	32	42.52
67	GCA_000262675.1	Streptococcus thermophilus MN-ZLW-002	MN-ZLW-002	SAMN02603848	-	China: Gannan region of Gansu province	-	515	0	25	29	38.29
68	GCA_020075985.1	Streptococcus thermophilus	CF10_14	SAMN15078596	2018-03-12	USA:MD	Homo sapiens	515	0	24	33	40.80
69	GCA_023278025.1	Streptococcus thermophilus	VHProbi R08	SAMN27162337	2021-01-25	China:Qingdao	Homo sapiens	515	0	25	29	38.29
70	GCA_041514325.1	Streptococcus thermophilus	S24730	SAMN18478706	2019	Switzerland	-	515	0	28	28	39.60
71	GCA_017360085.1	Streptococcus thermophilus	24738	SAMN15923547	2019	Switzerland	-	516	0	25	28	37.54
72	GCA_017360165.1	Streptococcus thermophilus	13499	SAMN15923544	1984	Switzerland	-	516	0	25	29	38.29
73	GCA_017367115.1	Streptococcus thermophilus	13499c1	SAMN15923542	1984	Switzerland	-	516	0	25	33	41.40
74	GCA_025186765.1	Streptococcus thermophilus	CIRM-BIA 1051	SAMN10365658	1974	Mongolia	-	516	0	25	32	40.61
75	GCA_903891015.1	Streptococcus thermophilus	-	SAMEA6957278	1974	Mongolia	-	516	0	25	28	37.54
76	GCA_017359885.1	Streptococcus thermophilus	24740	SAMN15923549	2019	Switzerland	-	517	0	25	29	38.29
77	GCA_017367085.1	Streptococcus thermophilus	13499c2	SAMN15923543	1984	Switzerland	-	518	0	25	33	41.40
78	GCA_017367015.1	Streptococcus thermophilus	S50	SAMN15923553	2019	Switzerland	-	519	0	25	33	41.40
79	GCA_017367165.1	Streptococcus thermophilus	13495	SAMN15923538	1984	Switzerland	-	519	0	25	30	39.05
80	GCA_001280285.1	Streptococcus thermophilus	MN-BM-A01	SAMN04002535	2012-09-15	China: Gansu	-	523	0	25	29	38.29
81	GCA_041510825.1	Streptococcus thermophilus	S24747	SAMN18478716	2019	Switzerland	-	529	0	28	29	40.31
82	GCA_025187585.1	Streptococcus thermophilus	CIRM-BIA 1860	SAMN10365630	1979	Austria	-	532	0	23	33	40.22
83	GCA_041510115.1	Streptococcus thermophilus	S24749	SAMN18478717	2019	Switzerland	-	532	0	28	29	40.31
84	GCA_041514335.1	Streptococcus thermophilus	S24728	SAMN18478705	2019	Switzerland	-	532	0	26	28	38.21
85	GCA_020076085.1	Streptococcus thermophilus	CF3_14	SAMN15078635	2018-03-12	USA:MD	Homo sapiens	535	0	22	33	39.66
86	GCA_042187335.1	Streptococcus thermophilus	S24727	SAMN18490522	2019	Switzerland	-	535	0	26	33	42.01
87	GCA_041514345.1	Streptococcus thermophilus	S24726	SAMN18478704	2019	Switzerland	-	536	0	26	29	38.95
88	GCA_019449795.1	Streptococcus thermophilus	Rico65	SAMN19116208	2020-11-09	Ireland	-	542	0	21	33	39.12
89	GCA_025187495.1	Streptococcus thermophilus	CIRM-BIA 1363	SAMN10365634	1993	France	-	542	0	20	33	38.59
90	GCA_039783255.1	Streptococcus thermophilus	MM1	SAMN16933240	2017	Ireland	-	542	0	22	28	35.61
91	GCA_001867185.1	Streptococcus thermophilus	UC8547del3	SAMN05463221	2010	Italy: Piacenza	-	543	0	18	33	37.59
92	GCA_001867245.1	Streptococcus thermophilus	UC8547	SAMN05463208	2005	Italy: Como	-	544	0	18	33	37.59
93	GCA_045159865.1	Streptococcus thermophilus	RR	SAMN16933251	1995	Ireland	-	546	0	22	28	35.61
94	GCA_000521305.1	Streptococcus thermophilus TH1436	TH1436	SAMN02402367	2011-04-01	Italy: Friuli Venezia Giulia	-	550	0	28	28	39.60
95	GCA_039783955.1	Streptococcus thermophilus	4145	SAMN16933254	1996	Ireland	-	551	0	28	29	40.31
96	GCA_039784885.1	Streptococcus thermophilus	ST128	SAMN16933244	1996	Ireland	-	559	0	26	29	38.95
97	GCA_040098105.1	Streptococcus thermophilus	CLA-JM-H39	SAMN40631525	2020-04-28	Germany:Aachen	Homo sapiens	561	0	29	33	43.93
98	GCA_040822615.1	Streptococcus thermophilus	ATA-LTC St140700	SAMN41784236	2000-07-14	Turkey: Izmir, Kemalpasa	-	561	0	29	33	43.93
99	GCA_040822555.1	Streptococcus thermophilus	ATA-LTC-Ld120812	SAMN41784240	2012-08-12	Turkey: Istanbul, Sisli	Homo sapiens	562	0	29	33	43.93
100	GCA_020076005.1	Streptococcus thermophilus	DS03_14	SAMN15078662	2018-03-12	USA:MD	Homo sapiens	568	0	25	33	41.40