GCA_041928905.1 - 5 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

gnlProkkaDPFNIEHJ_3 (original name was: gnl|Prokka|DPFNIEHJ_3)

Region	Type	From	To	Most similar known cluster		Similarity
Region 3.1	cyclic-lactone-autoinducer	8,902	29,613

gnlProkkaDPFNIEHJ_9 (original name was: gnl|Prokka|DPFNIEHJ_9)

Region	Type	From	To	Most similar known cluster		Similarity
Region 9.1	terpene	96,846	117,727

gnlProkkaDPFNIEHJ_10 (original name was: gnl|Prokka|DPFNIEHJ_10)

Region	Type	From	To	Most similar known cluster		Similarity
Region 10.1	RiPP-like	15,747	27,897	salivaricin CRL1328 α peptide/salivaricin CRL1328 β peptide	RiPP	16%

gnlProkkaDPFNIEHJ_19 (original name was: gnl|Prokka|DPFNIEHJ_19)

Region	Type	From	To	Most similar known cluster		Similarity
Region 19.1	T3PKS	43,159	71,586

gnlProkkaDPFNIEHJ_40 (original name was: gnl|Prokka|DPFNIEHJ_40)

Region	Type	From	To	Most similar known cluster		Similarity
Region 40.1	NRPS	1	4,550

Region	Type	From	To	Most similar known cluster	Similarity
Region 3.1	cyclic-lactone-autoinducer	8,902	29,613
Region 9.1	terpene	96,846	117,727
Region 10.1	RiPP-like	15,747	27,897	salivaricin CRL1328 α peptide/salivaricin CRL1328 β peptide	RiPP	16%
Region 19.1	T3PKS	43,159	71,586
Region 40.1	NRPS	1	4,550

Compact view

gnlProkkaDPFNIEHJ_3 - Region 1 - cyclic-lactone-autoinducer

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Location: 8,902 - 29,613 nt. (total: 20,712 nt) Show pHMM detection rules used

Region on contig edge.

cyclic-lactone-autoinducer: (TIGR04223 or AgrB)

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

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Gene overview

KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaDPFNIEHJ_9 - Region 1 - terpene

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Location: 96,846 - 117,727 nt. (total: 20,882 nt) Show pHMM detection rules used

terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaDPFNIEHJ_10 - Region 1 - RiPP-like

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Location: 15,747 - 27,897 nt. (total: 12,151 nt) Show pHMM detection rules used

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193 or (YcaO or TIGR03604))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Gene overview

KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

gnlProkkaDPFNIEHJ_19 - Region 1 - T3PKS

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Location: 43,159 - 71,586 nt. (total: 28,428 nt) Show pHMM detection rules used

Region on contig edge.

T3PKS: (Chal_sti_synt_C or Chal_sti_synt_N)

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core biosynthetic genes

additional biosynthetic genes

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resistance

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KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaDPFNIEHJ_40 - Region 1 - NRPS

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Location: 1 - 4,550 nt. (total: 4,550 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: cds(Condensation and (AMP-binding or A-OX))

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

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resistance

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NRPS/PKS domains

KnownClusterBlast

NRPS/PKS modules

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Detailed domain annotation

Selected features only

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Similar known gene clusters from MIBiG 3.1

No matches found.

Module view

Legend

NRPS/PKS products

NRPS/PKS substrates

Predicted core structure(s)

For candidate cluster 1, location 0 - 4550:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (Gly)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS substrate predictions

ctg40_1

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AMP-binding (260..638): Gly

nrpys: Gly

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
Large clusters prediction:: Apolar, aliphatic (Gly, Ala, Val, Leu, Ile, Abu, Ival)
Small clusters prediction:: Tiny, hydrophilic, transition to aliphatic (Gly, Ala)
Single AA prediction:: gly (Gly)

Stachelhaus prediction details:

Stachelhaus sequence:: DITQMGIVWK
Nearest Stachelhaus code(s):: Gly DILQMGMVWK (62% 8Å match)
Stachelhaus code match:: 80% (moderate)