GCA_047463255.1 - 7 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

gnlProkkaGFMHCCIN_1 (original name was: gnl|Prokka|GFMHCCIN_1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 1.1	RiPP-like	73,971	86,067	quinolidomicin A	Polyketide	3%

gnlProkkaGFMHCCIN_2 (original name was: gnl|Prokka|GFMHCCIN_2)

Region	Type	From	To	Most similar known cluster		Similarity
Region 2.1	RiPP-like	54,914	73,756

gnlProkkaGFMHCCIN_11 (original name was: gnl|Prokka|GFMHCCIN_11)

Region	Type	From	To	Most similar known cluster		Similarity
Region 11.1	RiPP-like	15,254	25,550

gnlProkkaGFMHCCIN_15 (original name was: gnl|Prokka|GFMHCCIN_15)

Region	Type	From	To	Most similar known cluster		Similarity
Region 15.1	T3PKS	1	21,439

gnlProkkaGFMHCCIN_34 (original name was: gnl|Prokka|GFMHCCIN_34)

Region	Type	From	To	Most similar known cluster		Similarity
Region 34.1	NRPS	1	16,192

gnlProkkaGFMHCCIN_35 (original name was: gnl|Prokka|GFMHCCIN_35)

Region	Type	From	To	Most similar known cluster		Similarity
Region 35.1	RRE-containing	3,438	16,059	nisin Q	RiPP:Lanthipeptide	36%

gnlProkkaGFMHCCIN_42 (original name was: gnl|Prokka|GFMHCCIN_42)

Region	Type	From	To	Most similar known cluster		Similarity
Region 42.1	RaS-RiPP	1	6,890

No secondary metabolite regions were found in these records:: gnlProkkaGFMHCCIN_3 (original name was: gnl|Prokka|GFMHCCIN_3); gnlProkkaGFMHCCIN_4 (original name was: gnl|Prokka|GFMHCCIN_4); gnlProkkaGFMHCCIN_5 (original name was: gnl|Prokka|GFMHCCIN_5); gnlProkkaGFMHCCIN_6 (original name was: gnl|Prokka|GFMHCCIN_6); gnlProkkaGFMHCCIN_7 (original name was: gnl|Prokka|GFMHCCIN_7); gnlProkkaGFMHCCIN_8 (original name was: gnl|Prokka|GFMHCCIN_8); gnlProkkaGFMHCCIN_9 (original name was: gnl|Prokka|GFMHCCIN_9); gnlProkkaGFMHCCIN_10 (original name was: gnl|Prokka|GFMHCCIN_10); gnlProkkaGFMHCCIN_12 (original name was: gnl|Prokka|GFMHCCIN_12); gnlProkkaGFMHCCIN_13 (original name was: gnl|Prokka|GFMHCCIN_13); gnlProkkaGFMHCCIN_14 (original name was: gnl|Prokka|GFMHCCIN_14); gnlProkkaGFMHCCIN_16 (original name was: gnl|Prokka|GFMHCCIN_16); gnlProkkaGFMHCCIN_17 (original name was: gnl|Prokka|GFMHCCIN_17); gnlProkkaGFMHCCIN_18 (original name was: gnl|Prokka|GFMHCCIN_18); gnlProkkaGFMHCCIN_19 (original name was: gnl|Prokka|GFMHCCIN_19); gnlProkkaGFMHCCIN_20 (original name was: gnl|Prokka|GFMHCCIN_20); gnlProkkaGFMHCCIN_21 (original name was: gnl|Prokka|GFMHCCIN_21); gnlProkkaGFMHCCIN_22 (original name was: gnl|Prokka|GFMHCCIN_22); gnlProkkaGFMHCCIN_23 (original name was: gnl|Prokka|GFMHCCIN_23); gnlProkkaGFMHCCIN_24 (original name was: gnl|Prokka|GFMHCCIN_24); gnlProkkaGFMHCCIN_25 (original name was: gnl|Prokka|GFMHCCIN_25); gnlProkkaGFMHCCIN_26 (original name was: gnl|Prokka|GFMHCCIN_26); gnlProkkaGFMHCCIN_27 (original name was: gnl|Prokka|GFMHCCIN_27); gnlProkkaGFMHCCIN_28 (original name was: gnl|Prokka|GFMHCCIN_28); gnlProkkaGFMHCCIN_29 (original name was: gnl|Prokka|GFMHCCIN_29); gnlProkkaGFMHCCIN_30 (original name was: gnl|Prokka|GFMHCCIN_30); gnlProkkaGFMHCCIN_31 (original name was: gnl|Prokka|GFMHCCIN_31); gnlProkkaGFMHCCIN_32 (original name was: gnl|Prokka|GFMHCCIN_32); gnlProkkaGFMHCCIN_33 (original name was: gnl|Prokka|GFMHCCIN_33); gnlProkkaGFMHCCIN_36 (original name was: gnl|Prokka|GFMHCCIN_36); gnlProkkaGFMHCCIN_37 (original name was: gnl|Prokka|GFMHCCIN_37); gnlProkkaGFMHCCIN_38 (original name was: gnl|Prokka|GFMHCCIN_38); gnlProkkaGFMHCCIN_39 (original name was: gnl|Prokka|GFMHCCIN_39); gnlProkkaGFMHCCIN_40 (original name was: gnl|Prokka|GFMHCCIN_40); gnlProkkaGFMHCCIN_41 (original name was: gnl|Prokka|GFMHCCIN_41); gnlProkkaGFMHCCIN_43 (original name was: gnl|Prokka|GFMHCCIN_43); gnlProkkaGFMHCCIN_44 (original name was: gnl|Prokka|GFMHCCIN_44); gnlProkkaGFMHCCIN_45 (original name was: gnl|Prokka|GFMHCCIN_45); gnlProkkaGFMHCCIN_46 (original name was: gnl|Prokka|GFMHCCIN_46); gnlProkkaGFMHCCIN_47 (original name was: gnl|Prokka|GFMHCCIN_47); gnlProkkaGFMHCCIN_48 (original name was: gnl|Prokka|GFMHCCIN_48); gnlProkkaGFMHCCIN_49 (original name was: gnl|Prokka|GFMHCCIN_49); gnlProkkaGFMHCCIN_50 (original name was: gnl|Prokka|GFMHCCIN_50); gnlProkkaGFMHCCIN_51 (original name was: gnl|Prokka|GFMHCCIN_51); gnlProkkaGFMHCCIN_52 (original name was: gnl|Prokka|GFMHCCIN_52); gnlProkkaGFMHCCIN_53 (original name was: gnl|Prokka|GFMHCCIN_53); gnlProkkaGFMHCCIN_54 (original name was: gnl|Prokka|GFMHCCIN_54); gnlProkkaGFMHCCIN_55 (original name was: gnl|Prokka|GFMHCCIN_55); gnlProkkaGFMHCCIN_56 (original name was: gnl|Prokka|GFMHCCIN_56)

Compact view

gnlProkkaGFMHCCIN_1 - Region 1 - RiPP-like

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Location: 73,971 - 86,067 nt. (total: 12,097 nt) Show pHMM detection rules used

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193 or (YcaO or TIGR03604))

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core biosynthetic genes

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KnownClusterBlast

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

gnlProkkaGFMHCCIN_2 - Region 1 - RiPP-like

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Location: 54,914 - 73,756 nt. (total: 18,843 nt) Show pHMM detection rules used

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193 or (YcaO or TIGR03604))

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core biosynthetic genes

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resistance

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KnownClusterBlast

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaGFMHCCIN_11 - Region 1 - RiPP-like

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Location: 15,254 - 25,550 nt. (total: 10,297 nt) Show pHMM detection rules used

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193 or (YcaO or TIGR03604))

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaGFMHCCIN_15 - Region 1 - T3PKS

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Location: 1 - 21,439 nt. (total: 21,439 nt) Show pHMM detection rules used

Region on contig edge.

T3PKS: (Chal_sti_synt_C or Chal_sti_synt_N)

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
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gnlProkkaGFMHCCIN_34 - Region 1 - NRPS

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Location: 1 - 16,192 nt. (total: 16,192 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: cds(Condensation and (AMP-binding or A-OX))

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NRPS/PKS domains

KnownClusterBlast

NRPS/PKS modules

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Detailed domain annotation

Selected features only

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Similar known gene clusters from MIBiG 3.1

No matches found.

Module view

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NRPS/PKS products

NRPS/PKS substrates

Predicted core structure(s)

For candidate cluster 1, location 0 - 16192:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (X - mal) + (Cys) + (ohmal)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS substrate predictions

ctg34_5

Search NORINE for peptide: strict or relaxed

AMP-binding (824..1226): Cys

nrpys: Cys

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
Large clusters prediction:: Polar, uncharged (aliphatic with -SH) (Cys)
Small clusters prediction:: Polar, uncharged (aliphatic with -SH) (Cys)
Single AA prediction:: Polar, uncharged (aliphatic with -SH) (Cys)

Stachelhaus prediction details:

Stachelhaus sequence:: DLFNLSLVWK
Nearest Stachelhaus code(s):: Cys DLFNLSLVWK (76% 8Å match)
Stachelhaus code match:: 100% (strong)

ctg34_6

AMP-binding (10..246): X

nrpys: Phe, Trp

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
Large clusters prediction:: N/A
Small clusters prediction:: Unpolar aromatic ring (Phe, Trp)
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: IPWTILDTLK
Nearest Stachelhaus code(s):: 3,4-dohBza MPWAIGDVLK (47% 8Å match)
Stachelhaus code match:: 60% (weak)

gnlProkkaGFMHCCIN_35 - Region 1 - RRE-containing

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Location: 3,438 - 16,059 nt. (total: 12,622 nt) Show pHMM detection rules used

Region on contig edge.

RRE-containing: minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE])

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core biosynthetic genes

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
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Similar known gene clusters from MIBiG 3.1

gnlProkkaGFMHCCIN_42 - Region 1 - RaS-RiPP

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Location: 1 - 6,890 nt. (total: 6,890 nt) Show pHMM detection rules used

Region on contig edge.

RaS-RiPP: (PF04055 and TIGR01716)

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core biosynthetic genes

additional biosynthetic genes

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resistance

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No matches found.