GCA_048565615.1 - 5 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

gnlProkkaBODDMGGB_2 (original name was: gnl|Prokka|BODDMGGB_2)

Region	Type	From	To	Most similar known cluster		Similarity
Region 2.1	T3PKS	1	30,944

gnlProkkaBODDMGGB_8 (original name was: gnl|Prokka|BODDMGGB_8)

Region	Type	From	To	Most similar known cluster		Similarity
Region 8.1	RiPP-like	25,290	37,440

gnlProkkaBODDMGGB_22 (original name was: gnl|Prokka|BODDMGGB_22)

Region	Type	From	To	Most similar known cluster		Similarity
Region 22.1	NRPS	1	38,783	mutanocyclin/leuvalin/tyrvalin	NRP	46%

gnlProkkaBODDMGGB_28 (original name was: gnl|Prokka|BODDMGGB_28)

Region	Type	From	To	Most similar known cluster		Similarity
Region 28.1	cyclic-lactone-autoinducer	8,479	29,184

gnlProkkaBODDMGGB_36 (original name was: gnl|Prokka|BODDMGGB_36)

Region	Type	From	To	Most similar known cluster		Similarity
Region 36.1	terpene	1,425	22,306

Region	Type	From	To	Most similar known cluster	Similarity
Region 2.1	T3PKS	1	30,944
Region 8.1	RiPP-like	25,290	37,440
Region 22.1	NRPS	1	38,783	mutanocyclin/leuvalin/tyrvalin	NRP	46%
Region 28.1	cyclic-lactone-autoinducer	8,479	29,184
Region 36.1	terpene	1,425	22,306

Compact view

gnlProkkaBODDMGGB_2 - Region 1 - T3PKS

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Location: 1 - 30,944 nt. (total: 30,944 nt) Show pHMM detection rules used

Region on contig edge.

T3PKS: (Chal_sti_synt_C or Chal_sti_synt_N)

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene overview

KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaBODDMGGB_8 - Region 1 - RiPP-like

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Location: 25,290 - 37,440 nt. (total: 12,151 nt) Show pHMM detection rules used

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193 or (YcaO or TIGR03604))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Gene overview

KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaBODDMGGB_22 - Region 1 - NRPS

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Location: 1 - 38,783 nt. (total: 38,783 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: cds(Condensation and (AMP-binding or A-OX))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Gene overview

NRPS/PKS domains

KnownClusterBlast

NRPS/PKS modules

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Detailed domain annotation

Selected features only

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Similar known gene clusters from MIBiG 3.1

Module view

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NRPS/PKS products

NRPS/PKS substrates

Predicted core structure(s)

For candidate cluster 1, location 0 - 38783:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (Thr)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS substrate predictions

ctg22_16

Search NORINE for peptide: strict or relaxed

AMP-binding (447..839): Thr

nrpys: Thr

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
Large clusters prediction:: N/A
Small clusters prediction:: thr (Thr)
Single AA prediction:: thr (Thr)

Stachelhaus prediction details:

Stachelhaus sequence:: DYFTLGLVVK
Nearest Stachelhaus code(s):: Leu DYFTFGLIIK (68% 8Å match); OMe-Trp DAFTLGCVFK (56% 8Å match)
Stachelhaus code match:: 70% (weak)

gnlProkkaBODDMGGB_28 - Region 1 - cyclic-lactone-autoinducer

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Location: 8,479 - 29,184 nt. (total: 20,706 nt) Show pHMM detection rules used

Region on contig edge.

cyclic-lactone-autoinducer: (TIGR04223 or AgrB)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Gene overview

KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaBODDMGGB_36 - Region 1 - terpene

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Location: 1,425 - 22,306 nt. (total: 20,882 nt) Show pHMM detection rules used

Region on contig edge.

terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Gene overview

KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.