GCA_900624825.1 - 7 region(s)

Identified primary metabolite regions

c00003_gnlPro.. (original name was: gnl|Prokka|KKGDFOHC_3)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 3.1	succinate2propionate	SCFA	263,016	287,543	Succinate to propionate B. theta	PRO	50%

c00009_gnlPro.. (original name was: gnl|Prokka|KKGDFOHC_9)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 9.1	Fumarate2succinate	SCFA	234,611	258,096	Fumarate to succinate B. thetaiotaomicron	SUC	100%

c00012_gnlPro.. (original name was: gnl|Prokka|KKGDFOHC_12)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 12.1	TPP_AA_metabolism	Putative	35,165	61,150

c00019_gnlPro.. (original name was: gnl|Prokka|KKGDFOHC_19)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 19.1	porA	SCFA	31,720	54,565	porA C. sporogenes	POR	60%

c00021_gnlPro.. (original name was: gnl|Prokka|KKGDFOHC_21)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 21.1	PFOR_II_pathway	SCFA	44,703	68,257	PFOR II pathway B. thetaiotaomicron	PFORII	100%

c00028_gnlPro.. (original name was: gnl|Prokka|KKGDFOHC_28)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 28.1	Pyruvate2acetate-formate	SCFA	24,954	47,937	Pyruvate to acetate-formate E. coli	PFL_acetate	100%

c00042_gnlPro.. (original name was: gnl|Prokka|KKGDFOHC_42)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 42.1	Rnf_complex	E-MGC	3,113	27,483	Rnf complex C. sporogenes	RNF	66%

No primary metabolite regions were found in these records:: c00001_gnlPro.. (original name was: gnl|Prokka|KKGDFOHC_1); c00002_gnlPro.. (original name was: gnl|Prokka|KKGDFOHC_2); c00004_gnlPro.. (original name was: gnl|Prokka|KKGDFOHC_4); c00005_gnlPro.. (original name was: gnl|Prokka|KKGDFOHC_5); c00006_gnlPro.. (original name was: gnl|Prokka|KKGDFOHC_6); c00007_gnlPro.. (original name was: gnl|Prokka|KKGDFOHC_7); c00008_gnlPro.. (original name was: gnl|Prokka|KKGDFOHC_8); c00010_gnlPro.. (original name was: gnl|Prokka|KKGDFOHC_10); c00011_gnlPro.. (original name was: gnl|Prokka|KKGDFOHC_11); c00013_gnlPro.. (original name was: gnl|Prokka|KKGDFOHC_13); c00014_gnlPro.. (original name was: gnl|Prokka|KKGDFOHC_14); c00015_gnlPro.. (original name was: gnl|Prokka|KKGDFOHC_15); c00016_gnlPro.. (original name was: gnl|Prokka|KKGDFOHC_16); c00017_gnlPro.. (original name was: gnl|Prokka|KKGDFOHC_17); c00018_gnlPro.. (original name was: gnl|Prokka|KKGDFOHC_18); c00020_gnlPro.. (original name was: gnl|Prokka|KKGDFOHC_20); c00022_gnlPro.. (original name was: gnl|Prokka|KKGDFOHC_22); c00023_gnlPro.. (original name was: gnl|Prokka|KKGDFOHC_23); c00024_gnlPro.. (original name was: gnl|Prokka|KKGDFOHC_24); c00025_gnlPro.. (original name was: gnl|Prokka|KKGDFOHC_25); c00026_gnlPro.. (original name was: gnl|Prokka|KKGDFOHC_26); c00027_gnlPro.. (original name was: gnl|Prokka|KKGDFOHC_27); c00029_gnlPro.. (original name was: gnl|Prokka|KKGDFOHC_29); c00030_gnlPro.. (original name was: gnl|Prokka|KKGDFOHC_30); c00031_gnlPro.. (original name was: gnl|Prokka|KKGDFOHC_31); c00032_gnlPro.. (original name was: gnl|Prokka|KKGDFOHC_32); c00033_gnlPro.. (original name was: gnl|Prokka|KKGDFOHC_33); c00034_gnlPro.. (original name was: gnl|Prokka|KKGDFOHC_34); c00035_gnlPro.. (original name was: gnl|Prokka|KKGDFOHC_35); c00036_gnlPro.. (original name was: gnl|Prokka|KKGDFOHC_36); c00037_gnlPro.. (original name was: gnl|Prokka|KKGDFOHC_37); c00038_gnlPro.. (original name was: gnl|Prokka|KKGDFOHC_38); c00039_gnlPro.. (original name was: gnl|Prokka|KKGDFOHC_39); c00040_gnlPro.. (original name was: gnl|Prokka|KKGDFOHC_40); c00041_gnlPro.. (original name was: gnl|Prokka|KKGDFOHC_41); c00043_gnlPro.. (original name was: gnl|Prokka|KKGDFOHC_43); c00044_gnlPro.. (original name was: gnl|Prokka|KKGDFOHC_44); c00045_gnlPro.. (original name was: gnl|Prokka|KKGDFOHC_45); c00046_gnlPro.. (original name was: gnl|Prokka|KKGDFOHC_46); c00047_gnlPro.. (original name was: gnl|Prokka|KKGDFOHC_47); c00048_gnlPro.. (original name was: gnl|Prokka|KKGDFOHC_48); c00049_gnlPro.. (original name was: gnl|Prokka|KKGDFOHC_49); c00050_gnlPro.. (original name was: gnl|Prokka|KKGDFOHC_50); c00051_gnlPro.. (original name was: gnl|Prokka|KKGDFOHC_51); c00052_gnlPro.. (original name was: gnl|Prokka|KKGDFOHC_52); c00053_gnlPro.. (original name was: gnl|Prokka|KKGDFOHC_53); c00054_gnlPro.. (original name was: gnl|Prokka|KKGDFOHC_54); c00055_gnlPro.. (original name was: gnl|Prokka|KKGDFOHC_55); c00056_gnlPro.. (original name was: gnl|Prokka|KKGDFOHC_56); c00057_gnlPro.. (original name was: gnl|Prokka|KKGDFOHC_57); c00058_gnlPro.. (original name was: gnl|Prokka|KKGDFOHC_58); c00059_gnlPro.. (original name was: gnl|Prokka|KKGDFOHC_59); c00060_gnlPro.. (original name was: gnl|Prokka|KKGDFOHC_60); c00061_gnlPro.. (original name was: gnl|Prokka|KKGDFOHC_61); c00062_gnlPro.. (original name was: gnl|Prokka|KKGDFOHC_62); c00063_gnlPro.. (original name was: gnl|Prokka|KKGDFOHC_63); c00064_gnlPro.. (original name was: gnl|Prokka|KKGDFOHC_64); c00065_gnlPro.. (original name was: gnl|Prokka|KKGDFOHC_65); c00066_gnlPro.. (original name was: gnl|Prokka|KKGDFOHC_66); c00067_gnlPro.. (original name was: gnl|Prokka|KKGDFOHC_67); c00068_gnlPro.. (original name was: gnl|Prokka|KKGDFOHC_68); c00069_gnlPro.. (original name was: gnl|Prokka|KKGDFOHC_69); c00070_gnlPro.. (original name was: gnl|Prokka|KKGDFOHC_70); c00071_gnlPro.. (original name was: gnl|Prokka|KKGDFOHC_71); c00072_gnlPro.. (original name was: gnl|Prokka|KKGDFOHC_72); c00073_gnlPro.. (original name was: gnl|Prokka|KKGDFOHC_73)

Compact view

c00003_gnlPro.. - Region 1 - succinate2propionate

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Location: 263,016 - 287,543 nt. (total: 24,528 nt) Show pHMM detection rules used

succinate2propionate: (minimum(4, [AcetylCoA_hyd_C, AcetylCoA_hydro, B12-binding, Biotin_lipoyl, Glyoxalase_4, HMGL-like, MM_CoA_mutase, MeaB, OAD_beta, OAD_gamma, PYC_OADA]) and minimum(1, [CT_Btheta, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, CT_Vparvula]) and not Cytidylate_kin)

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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c00009_gnlPro.. - Region 1 - Fumarate2succinate

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Location: 234,611 - 258,096 nt. (total: 23,486 nt) Show pHMM detection rules used

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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c00012_gnlPro.. - Region 1 - TPP_AA_metabolism

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Location: 35,165 - 61,150 nt. (total: 25,986 nt) Show pHMM detection rules used

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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KnownClusterBlast

Similar known gene clusters

No matches found.

c00019_gnlPro.. - Region 1 - porA

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Location: 31,720 - 54,565 nt. (total: 22,846 nt) Show pHMM detection rules used

porA: (Fer4_7 and TPP_enzyme_C and POR and POR_N and PFOR_II and not (EKR or Fer4_16))

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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KnownClusterBlast

Similar known gene clusters

c00021_gnlPro.. - Region 1 - PFOR_II_pathway

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Location: 44,703 - 68,257 nt. (total: 23,555 nt) Show pHMM detection rules used

PFOR_II_pathway: cds(POR and POR_N and PFOR_II and EKR and Fer4_16 and TPP_enzyme_C)

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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KnownClusterBlast

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c00028_gnlPro.. - Region 1 - Pyruvate2acetate-formate

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Location: 24,954 - 47,937 nt. (total: 22,984 nt) Show pHMM detection rules used

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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KnownClusterBlast

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c00042_gnlPro.. - Region 1 - Rnf_complex

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Location: 3,113 - 27,483 nt. (total: 24,371 nt) Show pHMM detection rules used

Rnf_complex: (Complex1_51K and minimum(5, [FMN_bind, FeS, Fer4, Fer4_9, NQR2_RnfD_RnfE, Rnf-Nqr, RnfC_N, SLBB]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters