GCA_901875525.1 - 5 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

gnlProkkaDDCBIDHL_4 (original name was: gnl|Prokka|DDCBIDHL_4)

Region	Type	From	To	Most similar known cluster		Similarity
Region 4.1	RiPP-like	54,365	64,437

gnlProkkaDDCBIDHL_7 (original name was: gnl|Prokka|DDCBIDHL_7)

Region	Type	From	To	Most similar known cluster		Similarity
Region 7.1	lanthipeptide-class-iv	33,806	49,594

gnlProkkaDDCBIDHL_9 (original name was: gnl|Prokka|DDCBIDHL_9)

Region	Type	From	To	Most similar known cluster		Similarity
Region 9.1	T3PKS	1	27,543

gnlProkkaDDCBIDHL_25 (original name was: gnl|Prokka|DDCBIDHL_25)

Region	Type	From	To	Most similar known cluster		Similarity
Region 25.1	RiPP-like	9,555	18,421

gnlProkkaDDCBIDHL_44 (original name was: gnl|Prokka|DDCBIDHL_44)

Region	Type	From	To	Most similar known cluster		Similarity
Region 43.1	RiPP-like	43,633	55,729	quinolidomicin A	Polyketide	3%

Region	Type	From	To	Most similar known cluster	Similarity
Region 4.1	RiPP-like	54,365	64,437
Region 7.1	lanthipeptide-class-iv	33,806	49,594
Region 9.1	T3PKS	1	27,543
Region 25.1	RiPP-like	9,555	18,421
Region 43.1	RiPP-like	43,633	55,729	quinolidomicin A	Polyketide	3%

Compact view

gnlProkkaDDCBIDHL_4 - Region 1 - RiPP-like

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Location: 54,365 - 64,437 nt. (total: 10,073 nt) Show pHMM detection rules used

Region on contig edge.

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193 or (YcaO or TIGR03604))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Gene overview

KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaDDCBIDHL_7 - Region 1 - lanthipeptide-class-iv

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Location: 33,806 - 49,594 nt. (total: 15,789 nt) Show pHMM detection rules used

Region on contig edge.

lanthipeptide-class-iv: (cds(LANC_like and Pkinase) and not micKC)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Gene overview

KnownClusterBlast

Lanthipeptides

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

Lanthipeptide predictions

Lanthipeptide(s) for ctg7_38

ctg7_40

Leader:

MSEEILMLQSMSVEEEINEVN

Core:

GQRFSTMSNYHCGGANFSLASNHYCRRK

Core with dehydrations:

GQRFDhaDhbMDhaNYHCysGGANFDhaLADhaNHYCysRRK

antiSMASH-DB 4.0 matches for ctg7_40

100.0% NZ_JADNKH010000035.1and 1 other:

NZ_OU540596.1 Lanthipeptides: JQ838_RS08065_lanthipeptide

Lanthipeptides: I2E19_RS11270_lanthipeptide

1

GQRFSTMSNYHCGGANFSLASNHYCRRK

28

GQRFSTMSNYHCGGANFSLASNHYCRRK

1

GQRFSTMSNYHCGGANFSLASNHYCRRK

28

42.9% NC_012470.1and 5 others:

NZ_CABY01000005.1 Lanthipeptides: SZBHS5_RS10335_lanthipeptideNZ_CP065058.1 Lanthipeptides: I2434_RS07250_lanthipeptideNZ_CP078012.1 Lanthipeptides: KV238_RS00510_lanthipeptideNZ_LS483328.1 Lanthipeptides: DQL47_RS07600_lanthipeptideNZ_LS483368.1 Lanthipeptides: DQM56_RS07295_lanthipeptide

Lanthipeptides: SZO_RS10195_lanthipeptide

1

GQRFSTMSNYHCGGANFSLASNHYC

25

G RFST S CG N+S S C

1

GMRFSTTSLSWCG--NWSAISAFGC

23

39.3% NZ_KB946328.1: Lanthipeptides: UC3_RS18350_lanthipeptide

1

GQRFSTMSNYHCGGANFSLASNHYC

25

G RFS++S CG N S S C

1

GARFSSLSGGSCG--NLSSVSIWDC

23

with 4 more sequence matches

35.7% NZ_MSKU01000037.1: Lanthipeptides: allorf_43371_43508_lanthipeptide

4

FSTMSNYHCGGANFSLASNHYC

25

ST+SN HC G S + YC

1

ISTISNEHCWGWP-SAVTTRYC

21

32.1% NZ_CP084108.1and 2 others:

NZ_CP102383.1 Lanthipeptides: NP781_RS20720_lanthipeptideNZ_JAASJR010000006.1 Lanthipeptides: HCH28_RS14710_lanthipeptide

Lanthipeptides: LCP48_RS21615_lanthipeptide

4

FSTMSNYHCGGANFSLASNHYCRR

27

+ST SN+ C G S+ S C +

2

YSTTSNFLCIGTP-SMMSQFTCSK

24

21.4% NZ_JACHIN010000025.1: Lassopeptides: allorf_47202_47381_lassopeptide

12

CGGANFSLASNHYCR

26

CGG ++ +YCR

3

CGGPHWEWIYPNYCR

17

14.3% NZ_LR134504.1and 1 other:

NZ_LR134504.1 Lanthipeptides: allorf_1623800_1623958_lanthipeptide

Lanthipeptides: allorf_1623800_1623958_lanthipeptide

1

GQRFSTMSNYHC

12

G RF T + Y C

1

GSRFETTAQYSC

12

Legend:

Dha: Didehydroalanine
Dhb: Didehydrobutyrine

Lanthipeptides

Core peptide predictions

ctg7_40 - Class III

Cleavage pHMM score: 1.30

RODEO score: 0

Monoisotopic mass: 3101.4 Da

Molecular weight: 3103.4 Da

Number of bridges: 2

Alternative weights: (assuming N unmodified Ser/Thr residues); 3121.4 Da N = 1; 3139.5 Da N = 2; 3157.5 Da N = 3

gnlProkkaDDCBIDHL_9 - Region 1 - T3PKS

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Location: 1 - 27,543 nt. (total: 27,543 nt) Show pHMM detection rules used

Region on contig edge.

T3PKS: (Chal_sti_synt_C or Chal_sti_synt_N)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Gene overview

KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaDDCBIDHL_25 - Region 1 - RiPP-like

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Location: 9,555 - 18,421 nt. (total: 8,867 nt) Show pHMM detection rules used

Region on contig edge.

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193 or (YcaO or TIGR03604))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

Gene overview

KnownClusterBlast

Gene/CDS overview

Filter:

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaDDCBIDHL_44 - Region 1 - RiPP-like

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Location: 43,633 - 55,729 nt. (total: 12,097 nt) Show pHMM detection rules used

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193 or (YcaO or TIGR03604))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

Gene overview

KnownClusterBlast

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1