Rank	Genome ID	Species	Strain	BioSample ID	Date	Location	Host	Allelic distance	ARGs	VFs	PGs	PPRS
1	GCA_025187545.1	Streptococcus thermophilus	CIRM-BIA 16	SAMN10365632	1954	France	-	0	0	37	33	49.58
2	GCA_903884415.1	Streptococcus thermophilus	-	SAMEA6957285	1954	France	-	0	0	37	29	47.01
3	GCA_019449915.1	Streptococcus thermophilus	Brie28	SAMN19136587	2020-11-09	Ireland	-	115	0	34	33	47.38
4	GCA_025187445.1	Streptococcus thermophilus	CIRM-BIA 1364	SAMN10365636	1995	France	-	119	0	34	33	47.38
5	GCA_025187185.1	Streptococcus thermophilus	CIRM-BIA 1116	SAMN10365649	1973	France	-	125	0	34	33	47.38
6	GCA_903891105.1	Streptococcus thermophilus	-	SAMEA6957280	1963	France	-	125	0	34	29	44.69
7	GCA_039784985.1	Streptococcus thermophilus	4147	SAMN16933253	1996	Ireland	-	131	0	34	29	44.69
8	GCA_001514435.1	Streptococcus thermophilus	S9	SAMN04384202	2013	China	-	135	0	34	29	44.69
9	GCA_025739325.1	Streptococcus thermophilus	CNRZ1151	SAMN16933238	1995	Ireland	-	144	0	37	29	47.01
10	GCA_025186555.1	Streptococcus thermophilus	CIRM-BIA 1122	SAMN10365664	1979	France	-	149	0	33	33	46.67
11	GCA_903891195.1	Streptococcus thermophilus	-	SAMEA6957282	1979	France	-	149	0	33	29	43.93
12	GCA_025187405.1	Streptococcus thermophilus	CIRM-BIA 29	SAMN10365639	1960	Netherlands	-	150	0	37	33	49.58
13	GCA_903886205.1	Streptococcus thermophilus	-	SAMEA6957290	1960	Netherlands	-	150	0	37	29	47.01
14	GCA_025186945.1	Streptococcus thermophilus	CIRM-BIA 1123	SAMN10365654	1975	France	-	151	0	34	33	47.38
15	GCA_036923315.1	Streptococcus thermophilus	TCI633	SAMN39973063	2016-03-24	Taiwan	Homo sapiens	159	0	34	28	44.05
16	GCA_039783195.1	Streptococcus thermophilus	90730	SAMN16933235	1995	Ireland	-	167	0	34	29	44.69
17	GCA_035758325.1	Streptococcus thermophilus	SCB0351	SAMN39326816	2013-09-10	China:Guangdong	-	184	0	34	28	44.05
18	GCA_035818935.1	Streptococcus thermophilus	SIT-20.S	SAMN38454960	2017-06-23	China:Yunan	-	184	0	34	32	46.69
19	GCA_001685375.1	Streptococcus thermophilus	CS8	SAMN05281844	2015	China: Yunnan	-	185	0	34	27	43.42
20	GCA_009741815.1	Streptococcus thermophilus	ST_AVK	SAMN13198391	-	-	-	186	0	34	32	46.69
21	GCA_000011845.1	Streptococcus thermophilus CNRZ1066	CNRZ1066	SAMN02603344	-	-	-	212	0	34	28	44.05
22	GCA_028864795.1	Streptococcus thermophilus	TCI633	SAMN31857476	2013-11-11	Taiwan: Taipei	Homo sapiens	312	0	34	25	42.20
23	GCA_039781665.1	Streptococcus thermophilus	4052	SAMN16933229	1995	Ireland	-	313	0	26	29	38.95
24	GCA_039783785.1	Streptococcus thermophilus	CNRZ887	SAMN16933249	1995	Ireland	-	412	0	21	28	35.00
25	GCA_025187645.1	Streptococcus thermophilus	CIRM-BIA 1056	SAMN10365627	1990	Indonesia	-	415	0	21	32	38.28
26	GCA_025187015.1	Streptococcus thermophilus	CIRM-BIA 2101	SAMN10365652	1975	Germany	-	416	0	21	32	38.28
27	GCA_903891305.1	Streptococcus thermophilus	-	SAMEA6957288	1975	Germany	-	416	0	21	28	35.00
28	GCA_025187235.1	Streptococcus thermophilus	CIRM-BIA 67	SAMN10365647	1971	France	-	420	0	21	32	38.28
29	GCA_903960675.1	Streptococcus thermophilus	-	SAMEA6957297	1971	France	-	420	0	21	27	34.21
30	GCA_025187265.1	Streptococcus thermophilus	CIRM-BIA 65	SAMN10365646	1971	France	-	421	0	21	32	38.28
31	GCA_903886475.1	Streptococcus thermophilus	-	SAMEA6957296	1971	France	-	421	0	21	28	35.00
32	GCA_025187275.1	Streptococcus thermophilus	CIRM-BIA 36	SAMN10365645	1971	France	-	425	0	21	32	38.28
33	GCA_903886385.1	Streptococcus thermophilus	-	SAMEA6957294	1971	France	-	425	0	21	28	35.00
34	GCA_025186965.1	Streptococcus thermophilus	CIRM-BIA 23	SAMN10365655	1958	France	-	479	0	26	33	42.01
35	GCA_903886195.1	Streptococcus thermophilus	-	SAMEA6957289	1955	France	-	479	0	26	29	38.95
36	GCA_000011825.1	Streptococcus thermophilus LMG 18311	LMG 18311	SAMN02604079	-	-	-	491	0	37	29	47.01
37	GCA_025187195.1	Streptococcus thermophilus	CIRM-BIA 1117	SAMN10365648	1973	France	-	500	0	21	32	38.28
38	GCA_020076015.1	Streptococcus thermophilus	CF13_14	SAMN15078605	2018-03-12	USA:MD	Homo sapiens	679	0	22	34	40.50
39	GCA_025739385.1	Streptococcus thermophilus	4067	SAMN16933230	1996	Ireland	-	679	0	22	28	35.61
40	GCA_039783225.1	Streptococcus thermophilus	CNRZ760	SAMN16933237	1995	Ireland	-	679	0	22	30	37.20
41	GCA_025186565.1	Streptococcus thermophilus	CIRM-BIA 1049	SAMN10365665	1979	France	-	681	0	22	34	40.50
42	GCA_903890925.1	Streptococcus thermophilus	-	SAMEA6957276	1978	France	-	681	0	22	30	37.20
43	GCA_025186625.1	Streptococcus thermophilus	CIRM-BIA 1048	SAMN10365662	1978	Bulgaria	-	682	0	22	33	39.66
44	GCA_903890905.1	Streptococcus thermophilus	-	SAMEA6957275	1978	Bulgaria	-	682	0	22	29	36.40
45	GCA_020075875.1	Streptococcus thermophilus	CF1_14	SAMN06464116	2016-10-15	USA:MD	Homo sapiens	683	0	21	33	39.12
46	GCA_025186525.1	Streptococcus thermophilus	CIRM-BIA 1121	SAMN10365663	1978	France	-	686	0	27	32	41.87
47	GCA_903891135.1	Streptococcus thermophilus	-	SAMEA6957281	1978	France	-	686	0	27	28	38.90
48	GCA_025187145.1	Streptococcus thermophilus	CIRM-BIA 772	SAMN10365650	1973	France	-	698	0	22	32	38.83
49	GCA_039782795.1	Streptococcus thermophilus	90728	SAMN16933233	1995	Ireland	-	698	0	23	30	37.80
50	GCA_903886635.1	Streptococcus thermophilus	-	SAMEA6957298	1963	France	-	698	0	22	28	35.61
51	GCA_002443035.1	Streptococcus thermophilus	B59671	SAMN07369158	-	USA:ERRC at Wyndmoor, PA	-	708	0	26	29	38.95
52	GCA_006539425.1	Streptococcus thermophilus	-	SAMD00097243	-	-	-	709	0	26	32	41.23
53	GCA_039783105.1	Streptococcus thermophilus	90729	SAMN16933234	1995	Ireland	-	709	0	22	30	37.20
54	GCA_013307265.1	Streptococcus thermophilus	CS9	SAMN09536719	2014	China	-	711	0	26	30	39.70
55	GCA_025186665.1	Streptococcus thermophilus	CIRM-BIA 1119	SAMN10365661	1978	Bulgaria	-	711	0	23	34	41.05
56	GCA_039784895.1	Streptococcus thermophilus	ST55	SAMN16933245	1995	Ireland	-	711	0	26	30	39.70
57	GCA_025132955.1	Streptococcus thermophilus	1047	SAMN10365132	2007	Kenya	-	712	0	26	33	42.01
58	GCA_025186725.1	Streptococcus thermophilus	CIRM-BIA 1124	SAMN10365660	1978	France	-	712	0	26	33	42.01
59	GCA_025186805.1	Streptococcus thermophilus	CIRM-BIA 1047	SAMN10365659	1978	France	-	712	0	26	33	42.01
60	GCA_038049945.1	Streptococcus thermophilus	TCI125	SAMN40642328	2013-11	Taiwan:Taipei	-	712	0	26	29	38.95
61	GCA_903890825.1	Streptococcus thermophilus	-	SAMEA6957274	1978	France	-	712	0	26	29	38.95
62	GCA_025187565.1	Streptococcus thermophilus	CIRM-BIA 1057	SAMN10365631	1991	France	-	713	0	26	33	42.01
63	GCA_029983065.1	Streptococcus thermophilus	FUA329	SAMN31530271	2020-05-27	China:Lianyungang	Homo sapiens	713	0	26	32	41.23
64	GCA_045159855.1	Streptococcus thermophilus	MM8	SAMN16933250	2017	Ireland	-	715	0	26	28	38.21
65	GCA_025186785.1	Streptococcus thermophilus	CIRM-BIA 1050	SAMN10365657	1973	Greece	-	716	0	25	33	41.40
66	GCA_903890945.1	Streptococcus thermophilus	-	SAMEA6957277	1973	Greece	-	716	0	25	29	38.29
67	GCA_027947275.1	Streptococcus thermophilus	TSGB 4240	SAMN32339319	2020-07	Turkey	-	717	0	17	34	38.01
68	GCA_039784855.1	Streptococcus thermophilus	CNRZ1202	SAMN16933239	1995	Ireland	-	717	0	25	29	38.29
69	GCA_025122495.1	Streptococcus thermophilus	CIRM-BIA 1131	SAMN10365212	1987	Greece	-	719	0	24	33	40.80
70	GCA_019449675.1	Streptococcus thermophilus	Vach57	SAMN19116181	2020-11-09	Ireland	-	720	0	23	33	40.22
71	GCA_021229135.1	Streptococcus thermophilus	8253 (205)	SAMN23827835	2001	Bulgaria: Balkan Mountains	-	720	0	24	33	40.80
72	GCA_027947295.1	Streptococcus thermophilus	TSGB 4236	SAMN32339317	2020-07	Turkey	-	720	0	21	32	38.28
73	GCA_025187585.1	Streptococcus thermophilus	CIRM-BIA 1860	SAMN10365630	1979	Austria	-	722	0	23	33	40.22
74	GCA_027947245.1	Streptococcus thermophilus	TSGB 4251	SAMN32339323	2020-07	Turkey	-	723	0	23	33	40.22
75	GCA_027947375.1	Streptococcus thermophilus	TSGB 4231	SAMN32339314	2020-07	Turkey	-	723	0	23	33	40.22
76	GCA_028463905.1	Streptococcus thermophilus	strain TSGB 4141	SAMN32902037	2020-07	Turkey	-	723	0	23	29	37.01
77	GCA_027947325.1	Streptococcus thermophilus	TSGB 4232	SAMN32339315	2020-07	Turkey	-	725	0	25	32	40.61
78	GCA_040883385.1	Streptococcus thermophilus	AM-ST-89	SAMN42007031	-	-	-	725	0	25	34	42.20
79	GCA_027947315.1	Streptococcus thermophilus	TSGB 4239	SAMN32339318	2020-07	Turkey	-	726	0	26	32	41.23
80	GCA_036784745.1	Streptococcus thermophilus	TSGB4237	SAMN37641162	2020-07	Turkey	-	726	0	26	28	38.21
81	GCA_041514265.1	Streptococcus thermophilus	S24735	SAMN18478710	2019	Switzerland	-	727	0	23	27	35.47
82	GCA_900094135.1	Streptococcus thermophilus	ACA-DC 2	SAMEA4355128	-	-	-	727	0	28	29	40.31
83	GCA_039784805.1	Streptococcus thermophilus	AVA116	SAMN16933236	1996	Ireland	-	728	0	28	29	40.31
84	GCA_025187705.1	Streptococcus thermophilus	CIRM-BIA 1125	SAMN10365625	1987	Greece	-	729	0	23	32	39.41
85	GCA_903891205.1	Streptococcus thermophilus	-	SAMEA6957283	1987	Greece	-	729	0	23	28	36.24
86	GCA_025187345.1	Streptococcus thermophilus	CIRM-BIA 30	SAMN10365642	1963	France	-	730	0	22	32	38.83
87	GCA_903886285.1	Streptococcus thermophilus	-	SAMEA6957291	1963	France	-	730	0	22	28	35.61
88	GCA_000182875.1	Streptococcus thermophilus ND03	ND03	SAMN02603938	-	-	-	731	0	22	29	36.40
89	GCA_001266475.1	Streptococcus thermophilus	KLDS3.1012	SAMN03957073	2009-02-02	China: Inner Mongolia	-	731	0	22	29	36.40
90	GCA_002012365.1	Streptococcus thermophilus	APC151	SAMN06349996	2015-02-13	Ireland	fish	731	0	22	29	36.40
91	GCA_003129655.1	Streptococcus thermophilus	KU30	SAMN09099014	2009-10-01	China:Hebei	-	731	0	22	32	38.83
92	GCA_017366965.1	Streptococcus thermophilus	S72	SAMN15923554	2019	Switzerland	-	731	0	25	33	41.40
93	GCA_017366985.1	Streptococcus thermophilus	24855	SAMN15923552	2019	Switzerland	-	731	0	25	29	38.29
94	GCA_017367225.1	Streptococcus thermophilus	13494	SAMN15923537	1984	Switzerland	-	731	0	25	29	38.29
95	GCA_020844005.1	Streptococcus thermophilus	4078	SAMN16933231	1996	Ireland	-	731	0	22	29	36.40
96	GCA_025187665.1	Streptococcus thermophilus	CIRM-BIA 1055	SAMN10365626	1990	France	-	731	0	22	33	39.66
97	GCA_039783475.1	Streptococcus thermophilus	AVA1121	SAMN16933246	1995	Ireland	-	731	0	25	26	36.07
98	GCA_903891025.1	Streptococcus thermophilus	-	SAMEA6957279	1990	France	-	731	0	22	29	36.40
99	GCA_019449755.1	Streptococcus thermophilus	Brie1	SAMN19116153	2020-11-09	Ireland	-	732	0	22	33	39.66
100	GCA_020829055.1	Streptococcus thermophilus	B4	SAMN18713779	2019	Ireland: Cork	-	732	0	22	33	39.66