GCA_905206725.1 - 7 region(s)

Identified primary metabolite regions

c00001_gnlPro.. (original name was: gnl|Prokka|NGHLIMDL_1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 1.1	Pyruvate2acetate-formate	SCFA	1	14,393	Pyruvate to acetate-formate E. coli	PFL_acetate	100%
Region 1.2	pdu	SCFA-other	58,238	100,034	Propanediol degradation S. enterica	PDU	54%

c00008_gnlPro.. (original name was: gnl|Prokka|NGHLIMDL_8)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 8.1	Others_HGD_unassigned	Putative	34,522	58,760

c00010_gnlPro.. (original name was: gnl|Prokka|NGHLIMDL_10)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 10.1	succinate2propionate	SCFA	28,012	52,984	Succinate to propionate B. theta	PRO	25%

c00017_gnlPro.. (original name was: gnl|Prokka|NGHLIMDL_17)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 17.1	OD_AA_metabolism	Putative	28,834	56,848	PFOR II pathway B. thetaiotaomicron	PFORII	100%

c00026_gnlPro.. (original name was: gnl|Prokka|NGHLIMDL_26)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 26.1	Rnf_complex	E-MGC	1	17,342	Rnf complex C. sporogenes	RNF	100%

c00040_gnlPro.. (original name was: gnl|Prokka|NGHLIMDL_40)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 40.1	acetate2butyrate	SCFA	1	17,451	Acetate to butyrate C. sporogenes	BUT	100%

No primary metabolite regions were found in these records:: c00002_gnlPro.. (original name was: gnl|Prokka|NGHLIMDL_2); c00003_gnlPro.. (original name was: gnl|Prokka|NGHLIMDL_3); c00004_gnlPro.. (original name was: gnl|Prokka|NGHLIMDL_4); c00005_gnlPro.. (original name was: gnl|Prokka|NGHLIMDL_5); c00006_gnlPro.. (original name was: gnl|Prokka|NGHLIMDL_6); c00007_gnlPro.. (original name was: gnl|Prokka|NGHLIMDL_7); c00009_gnlPro.. (original name was: gnl|Prokka|NGHLIMDL_9); c00011_gnlPro.. (original name was: gnl|Prokka|NGHLIMDL_11); c00012_gnlPro.. (original name was: gnl|Prokka|NGHLIMDL_12); c00013_gnlPro.. (original name was: gnl|Prokka|NGHLIMDL_13); c00014_gnlPro.. (original name was: gnl|Prokka|NGHLIMDL_14); c00015_gnlPro.. (original name was: gnl|Prokka|NGHLIMDL_15); c00016_gnlPro.. (original name was: gnl|Prokka|NGHLIMDL_16); c00018_gnlPro.. (original name was: gnl|Prokka|NGHLIMDL_18); c00019_gnlPro.. (original name was: gnl|Prokka|NGHLIMDL_19); c00020_gnlPro.. (original name was: gnl|Prokka|NGHLIMDL_20); c00021_gnlPro.. (original name was: gnl|Prokka|NGHLIMDL_21); c00022_gnlPro.. (original name was: gnl|Prokka|NGHLIMDL_22); c00023_gnlPro.. (original name was: gnl|Prokka|NGHLIMDL_23); c00024_gnlPro.. (original name was: gnl|Prokka|NGHLIMDL_24); c00025_gnlPro.. (original name was: gnl|Prokka|NGHLIMDL_25); c00027_gnlPro.. (original name was: gnl|Prokka|NGHLIMDL_27); c00028_gnlPro.. (original name was: gnl|Prokka|NGHLIMDL_28); c00029_gnlPro.. (original name was: gnl|Prokka|NGHLIMDL_29); c00030_gnlPro.. (original name was: gnl|Prokka|NGHLIMDL_30); c00031_gnlPro.. (original name was: gnl|Prokka|NGHLIMDL_31); c00032_gnlPro.. (original name was: gnl|Prokka|NGHLIMDL_32); c00033_gnlPro.. (original name was: gnl|Prokka|NGHLIMDL_33); c00034_gnlPro.. (original name was: gnl|Prokka|NGHLIMDL_34); c00035_gnlPro.. (original name was: gnl|Prokka|NGHLIMDL_35); c00036_gnlPro.. (original name was: gnl|Prokka|NGHLIMDL_36); c00037_gnlPro.. (original name was: gnl|Prokka|NGHLIMDL_37); c00038_gnlPro.. (original name was: gnl|Prokka|NGHLIMDL_38); c00039_gnlPro.. (original name was: gnl|Prokka|NGHLIMDL_39); c00041_gnlPro.. (original name was: gnl|Prokka|NGHLIMDL_41); c00042_gnlPro.. (original name was: gnl|Prokka|NGHLIMDL_42); c00043_gnlPro.. (original name was: gnl|Prokka|NGHLIMDL_43); c00044_gnlPro.. (original name was: gnl|Prokka|NGHLIMDL_44); c00045_gnlPro.. (original name was: gnl|Prokka|NGHLIMDL_45); c00046_gnlPro.. (original name was: gnl|Prokka|NGHLIMDL_46); c00047_gnlPro.. (original name was: gnl|Prokka|NGHLIMDL_47); c00048_gnlPro.. (original name was: gnl|Prokka|NGHLIMDL_48); c00049_gnlPro.. (original name was: gnl|Prokka|NGHLIMDL_49); c00050_gnlPro.. (original name was: gnl|Prokka|NGHLIMDL_50); c00051_gnlPro.. (original name was: gnl|Prokka|NGHLIMDL_51); c00052_gnlPro.. (original name was: gnl|Prokka|NGHLIMDL_52); c00053_gnlPro.. (original name was: gnl|Prokka|NGHLIMDL_53); c00054_gnlPro.. (original name was: gnl|Prokka|NGHLIMDL_54); c00055_gnlPro.. (original name was: gnl|Prokka|NGHLIMDL_55); c00056_gnlPro.. (original name was: gnl|Prokka|NGHLIMDL_56); c00057_gnlPro.. (original name was: gnl|Prokka|NGHLIMDL_57); c00058_gnlPro.. (original name was: gnl|Prokka|NGHLIMDL_58); c00059_gnlPro.. (original name was: gnl|Prokka|NGHLIMDL_59); c00060_gnlPro.. (original name was: gnl|Prokka|NGHLIMDL_60); c00061_gnlPro.. (original name was: gnl|Prokka|NGHLIMDL_61); c00062_gnlPro.. (original name was: gnl|Prokka|NGHLIMDL_62); c00063_gnlPro.. (original name was: gnl|Prokka|NGHLIMDL_63); c00064_gnlPro.. (original name was: gnl|Prokka|NGHLIMDL_64); c00065_gnlPro.. (original name was: gnl|Prokka|NGHLIMDL_65); c00066_gnlPro.. (original name was: gnl|Prokka|NGHLIMDL_66); c00067_gnlPro.. (original name was: gnl|Prokka|NGHLIMDL_67); c00068_gnlPro.. (original name was: gnl|Prokka|NGHLIMDL_68); c00069_gnlPro.. (original name was: gnl|Prokka|NGHLIMDL_69); c00070_gnlPro.. (original name was: gnl|Prokka|NGHLIMDL_70); c00071_gnlPro.. (original name was: gnl|Prokka|NGHLIMDL_71); c00072_gnlPro.. (original name was: gnl|Prokka|NGHLIMDL_72); c00073_gnlPro.. (original name was: gnl|Prokka|NGHLIMDL_73); c00074_gnlPro.. (original name was: gnl|Prokka|NGHLIMDL_74); c00075_gnlPro.. (original name was: gnl|Prokka|NGHLIMDL_75); c00076_gnlPro.. (original name was: gnl|Prokka|NGHLIMDL_76); c00077_gnlPro.. (original name was: gnl|Prokka|NGHLIMDL_77); c00078_gnlPro.. (original name was: gnl|Prokka|NGHLIMDL_78); c00079_gnlPro.. (original name was: gnl|Prokka|NGHLIMDL_79); c00080_gnlPro.. (original name was: gnl|Prokka|NGHLIMDL_80); c00081_gnlPro.. (original name was: gnl|Prokka|NGHLIMDL_81); c00082_gnlPro.. (original name was: gnl|Prokka|NGHLIMDL_82)

Compact view

c00001_gnlPro.. - Region 1 - Pyruvate2acetate-formate

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Location: 1 - 14,393 nt. (total: 14,393 nt) Show pHMM detection rules used

Region on contig edge.

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

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c00001_gnlPro.. - Region 2 - pdu

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Location: 58,238 - 100,034 nt. (total: 41,797 nt) Show pHMM detection rules used

pdu: (minimum(2, [Aldedh, BMC, Cob_adeno_trans, EutN_CcmL, Fe-ADH, Fe-ADH_2, PDU_like, PTAC, PduV-EutP]) and Dehydratase_MU and Dehydratase_SU and Dehydratase_LU)

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c00008_gnlPro.. - Region 1 - Others_HGD_unassigned

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Location: 34,522 - 58,760 nt. (total: 24,239 nt) Show pHMM detection rules used

Others_HGD_unassigned: (minimum(1, [HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Lactoyl-CoA1, Lactoyl-CoA2]) and minimum(1, [ACP_syn_III, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AdoHcyase_NAD, AlaDh_PNT_C, BcrAD_BadFG, Biotin_lipoyl, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_6_Glutaconate, CoA_transf_3, ECH_1, ECH_2, ETF, ETF_alpha, FGGY_C, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, Mal_decarbox_Al, Peptidase_M22, Peptidase_M23, Thiolase_C, Thiolase_N, ketoacyl-synt]) and not (minimum(2, [AcetylCoA_hyd_C, BcrAD_BadFG, CoA_trans, CoA_trans_230_acto, Mal_decarbox_Al]) and Lactoyl-CoA2 and Lactoyl-CoA1) and not (minimum(4, [ACP_syn_III, ACP_syn_III_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AlaDh_PNT_C, BcrAD_BadFG, ECH_1, ECH_2, ETF, ETF_alpha, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, IlvN, NAD_Gly3P_dh_N, Thiolase_C, Thiolase_N, ketoacyl-synt]) and HAAA1 and not HleuS1))

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No matches found.

c00010_gnlPro.. - Region 1 - succinate2propionate

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Location: 28,012 - 52,984 nt. (total: 24,973 nt) Show pHMM detection rules used

succinate2propionate: (minimum(4, [AcetylCoA_hyd_C, AcetylCoA_hydro, B12-binding, Biotin_lipoyl, Glyoxalase_4, HMGL-like, MM_CoA_mutase, MeaB, OAD_beta, OAD_gamma, PYC_OADA]) and minimum(1, [CT_Btheta, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, CT_Vparvula]) and not Cytidylate_kin)

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c00017_gnlPro.. - Region 1 - OD_AA_metabolism

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Location: 28,834 - 56,848 nt. (total: 28,015 nt) Show pHMM detection rules used

Region on contig edge.

OD_AA_metabolism: (minimum(1, [PFOR_II, POR, POR_N]) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (Gly_radical_scatole or Gly_radical or Gly_430_pcre or Gly_8-9_TMA))

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c00026_gnlPro.. - Region 1 - Rnf_complex

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Location: 1 - 17,342 nt. (total: 17,342 nt) Show pHMM detection rules used

Region on contig edge.

Rnf_complex: (Complex1_51K and minimum(5, [FMN_bind, FeS, Fer4, Fer4_9, NQR2_RnfD_RnfE, Rnf-Nqr, RnfC_N, SLBB]))

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c00040_gnlPro.. - Region 1 - acetate2butyrate

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Location: 1 - 17,451 nt. (total: 17,451 nt) Show pHMM detection rules used

Region on contig edge.

acetate2butyrate: (not (POR or POR_N or PFOR_II) and minimum(4, [Acyl-CoA_dh_1, Acyl-CoA_dh_2, ECH_2, ETF, ETF_alpha, HCDH_N, Thiolase_N, ketoacyl-synt]) and HCDH and minimum(1, [EC1_2-faecali, ECH1_Enoyl_CoA_DH1, ECH1_Enoyl_CoA_DH2, ECH1_Enoyl_CoA_DH3, ECH1_Enoyl_CoA_DH4, Thiolase_C]))

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core biosynthetic genes

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