GCA_932750725.1 - 8 region(s)

Identified primary metabolite regions

c00001_gnlPro.. (original name was: gnl|Prokka|DKIOEPJH_1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 1.1	Fumarate2succinate	SCFA	415,326	438,796	Fumarate to succinate B. thetaiotaomicron	SUC	100%

c00002_gnlPro.. (original name was: gnl|Prokka|DKIOEPJH_2)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 2.1	PFOR_II_pathway	SCFA	44,627	68,184	PFOR II pathway B. thetaiotaomicron	PFORII	100%

c00004_gnlPro.. (original name was: gnl|Prokka|DKIOEPJH_4)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 4.1	TPP_AA_metabolism	Putative	1	22,141

c00005_gnlPro.. (original name was: gnl|Prokka|DKIOEPJH_5)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 5.1	Pyruvate2acetate-formate	SCFA	140,003	162,958	Pyruvate to acetate-formate B. thetaiotaomicron	PFL_acetate	100%

c00010_gnlPro.. (original name was: gnl|Prokka|DKIOEPJH_10)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 10.1	NADH_dehydrogenase_I	E-MGC	32,513	62,744	NADH dehydrogenase I Bacteroides sp.	NADHD	80%

c00013_gnlPro.. (original name was: gnl|Prokka|DKIOEPJH_13)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 13.1	succinate2propionate	SCFA	25,392	50,004	Succinate to propionate B. theta	PRO	75%
Region 13.2	porA	SCFA	121,850	144,693	porA C. sporogenes	POR	80%

c00019_gnlPro.. (original name was: gnl|Prokka|DKIOEPJH_19)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 19.1	Rnf_complex	E-MGC	5,419	30,653	Rnf complex C. sporogenes	RNF	83%

No primary metabolite regions were found in these records:: c00003_gnlPro.. (original name was: gnl|Prokka|DKIOEPJH_3); c00006_gnlPro.. (original name was: gnl|Prokka|DKIOEPJH_6); c00007_gnlPro.. (original name was: gnl|Prokka|DKIOEPJH_7); c00008_gnlPro.. (original name was: gnl|Prokka|DKIOEPJH_8); c00009_gnlPro.. (original name was: gnl|Prokka|DKIOEPJH_9); c00011_gnlPro.. (original name was: gnl|Prokka|DKIOEPJH_11); c00012_gnlPro.. (original name was: gnl|Prokka|DKIOEPJH_12); c00014_gnlPro.. (original name was: gnl|Prokka|DKIOEPJH_14); c00015_gnlPro.. (original name was: gnl|Prokka|DKIOEPJH_15); c00016_gnlPro.. (original name was: gnl|Prokka|DKIOEPJH_16); c00017_gnlPro.. (original name was: gnl|Prokka|DKIOEPJH_17); c00018_gnlPro.. (original name was: gnl|Prokka|DKIOEPJH_18); c00020_gnlPro.. (original name was: gnl|Prokka|DKIOEPJH_20); c00021_gnlPro.. (original name was: gnl|Prokka|DKIOEPJH_21); c00022_gnlPro.. (original name was: gnl|Prokka|DKIOEPJH_22); c00023_gnlPro.. (original name was: gnl|Prokka|DKIOEPJH_23); c00024_gnlPro.. (original name was: gnl|Prokka|DKIOEPJH_24); c00025_gnlPro.. (original name was: gnl|Prokka|DKIOEPJH_25); c00026_gnlPro.. (original name was: gnl|Prokka|DKIOEPJH_26); c00027_gnlPro.. (original name was: gnl|Prokka|DKIOEPJH_27); c00028_gnlPro.. (original name was: gnl|Prokka|DKIOEPJH_28); c00029_gnlPro.. (original name was: gnl|Prokka|DKIOEPJH_29); c00030_gnlPro.. (original name was: gnl|Prokka|DKIOEPJH_30); c00031_gnlPro.. (original name was: gnl|Prokka|DKIOEPJH_31); c00032_gnlPro.. (original name was: gnl|Prokka|DKIOEPJH_32); c00033_gnlPro.. (original name was: gnl|Prokka|DKIOEPJH_33); c00034_gnlPro.. (original name was: gnl|Prokka|DKIOEPJH_34); c00035_gnlPro.. (original name was: gnl|Prokka|DKIOEPJH_35); c00036_gnlPro.. (original name was: gnl|Prokka|DKIOEPJH_36); c00037_gnlPro.. (original name was: gnl|Prokka|DKIOEPJH_37); c00038_gnlPro.. (original name was: gnl|Prokka|DKIOEPJH_38); c00039_gnlPro.. (original name was: gnl|Prokka|DKIOEPJH_39); c00040_gnlPro.. (original name was: gnl|Prokka|DKIOEPJH_40); c00041_gnlPro.. (original name was: gnl|Prokka|DKIOEPJH_41); c00042_gnlPro.. (original name was: gnl|Prokka|DKIOEPJH_42); c00043_gnlPro.. (original name was: gnl|Prokka|DKIOEPJH_43); c00044_gnlPro.. (original name was: gnl|Prokka|DKIOEPJH_44); c00045_gnlPro.. (original name was: gnl|Prokka|DKIOEPJH_45); c00046_gnlPro.. (original name was: gnl|Prokka|DKIOEPJH_46); c00047_gnlPro.. (original name was: gnl|Prokka|DKIOEPJH_47); c00048_gnlPro.. (original name was: gnl|Prokka|DKIOEPJH_48); c00049_gnlPro.. (original name was: gnl|Prokka|DKIOEPJH_49); c00050_gnlPro.. (original name was: gnl|Prokka|DKIOEPJH_50); c00051_gnlPro.. (original name was: gnl|Prokka|DKIOEPJH_51); c00052_gnlPro.. (original name was: gnl|Prokka|DKIOEPJH_52); c00053_gnlPro.. (original name was: gnl|Prokka|DKIOEPJH_53); c00054_gnlPro.. (original name was: gnl|Prokka|DKIOEPJH_54)

Compact view

c00001_gnlPro.. - Region 1 - Fumarate2succinate

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Location: 415,326 - 438,796 nt. (total: 23,471 nt) Show pHMM detection rules used

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

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c00002_gnlPro.. - Region 1 - PFOR_II_pathway

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Location: 44,627 - 68,184 nt. (total: 23,558 nt) Show pHMM detection rules used

PFOR_II_pathway: cds(POR and POR_N and PFOR_II and EKR and Fer4_16 and TPP_enzyme_C)

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core biosynthetic genes

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resistance genes

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c00004_gnlPro.. - Region 1 - TPP_AA_metabolism

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Location: 1 - 22,141 nt. (total: 22,141 nt) Show pHMM detection rules used

Region on contig edge.

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

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No matches found.

c00005_gnlPro.. - Region 1 - Pyruvate2acetate-formate

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Location: 140,003 - 162,958 nt. (total: 22,956 nt) Show pHMM detection rules used

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

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core biosynthetic genes

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c00010_gnlPro.. - Region 1 - NADH_dehydrogenase_I

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Location: 32,513 - 62,744 nt. (total: 30,232 nt) Show pHMM detection rules used

NADH_dehydrogenase_I: (Oxidored_q4 and Oxidored_q6 and Complex1_30kDa and Complex1_49kDa and NADHdh and Oxidored_q3 and Oxidored_q2 and minimum(4, [Fe-2S_thioredx, Fer2_4, Fer4_7, Molybdop_Fe4S4, Molydop_binding, NADH-G_4Fe-4S_3, NADH_4Fe-4S, Proton_antipo_M, Proton_antipo_N, SLBB]))

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c00013_gnlPro.. - Region 1 - succinate2propionate

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Location: 25,392 - 50,004 nt. (total: 24,613 nt) Show pHMM detection rules used

succinate2propionate: (minimum(4, [AcetylCoA_hyd_C, AcetylCoA_hydro, B12-binding, Biotin_lipoyl, Glyoxalase_4, HMGL-like, MM_CoA_mutase, MeaB, OAD_beta, OAD_gamma, PYC_OADA]) and minimum(1, [CT_Btheta, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, CT_Vparvula]) and not Cytidylate_kin)

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c00013_gnlPro.. - Region 2 - porA

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Location: 121,850 - 144,693 nt. (total: 22,844 nt) Show pHMM detection rules used

porA: (Fer4_7 and TPP_enzyme_C and POR and POR_N and PFOR_II and not (EKR or Fer4_16))

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resistance genes

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c00019_gnlPro.. - Region 1 - Rnf_complex

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Location: 5,419 - 30,653 nt. (total: 25,235 nt) Show pHMM detection rules used

Rnf_complex: (Complex1_51K and minimum(5, [FMN_bind, FeS, Fer4, Fer4_9, NQR2_RnfD_RnfE, Rnf-Nqr, RnfC_N, SLBB]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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Gene details

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KnownClusterBlast

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