GCA_934825545.1 - 6 region(s)

Identified primary metabolite regions

c00001_gnlPro.. (original name was: gnl|Prokka|BIGFKLDO_1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 1.1	acetate2butyrate	SCFA	44,858	71,100	Acetate to butyrate C. sporogenes	BUT	100%

c00003_gnlPro.. (original name was: gnl|Prokka|BIGFKLDO_3)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 3.1	Pyruvate2acetate-formate	SCFA	45,343	68,334	Pyruvate to acetate-formate E. coli	PFL_acetate	100%
Region 3.2	Rnf_complex	E-MGC	87,075	112,022	Rnf complex C. sporogenes	RNF	83%

c00004_gnlPro.. (original name was: gnl|Prokka|BIGFKLDO_4)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 4.1	Others_HGD_unassigned	Putative	61,835	92,795

c00008_gnlPro.. (original name was: gnl|Prokka|BIGFKLDO_8)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 8.1	Putrescine2spermidine	Aliphatic_amine	64,479	84,717	Arginine2putrescine R. gnavus	PUTR	100%

c00021_gnlPro.. (original name was: gnl|Prokka|BIGFKLDO_21)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 21.1	TPP_AA_metabolism	Putative	21,144	41,428	Threonine to propionate E. coli	PROP	20%

No primary metabolite regions were found in these records:: c00002_gnlPro.. (original name was: gnl|Prokka|BIGFKLDO_2); c00005_gnlPro.. (original name was: gnl|Prokka|BIGFKLDO_5); c00006_gnlPro.. (original name was: gnl|Prokka|BIGFKLDO_6); c00007_gnlPro.. (original name was: gnl|Prokka|BIGFKLDO_7); c00009_gnlPro.. (original name was: gnl|Prokka|BIGFKLDO_9); c00010_gnlPro.. (original name was: gnl|Prokka|BIGFKLDO_10); c00011_gnlPro.. (original name was: gnl|Prokka|BIGFKLDO_11); c00012_gnlPro.. (original name was: gnl|Prokka|BIGFKLDO_12); c00013_gnlPro.. (original name was: gnl|Prokka|BIGFKLDO_13); c00014_gnlPro.. (original name was: gnl|Prokka|BIGFKLDO_14); c00015_gnlPro.. (original name was: gnl|Prokka|BIGFKLDO_15); c00016_gnlPro.. (original name was: gnl|Prokka|BIGFKLDO_16); c00017_gnlPro.. (original name was: gnl|Prokka|BIGFKLDO_17); c00018_gnlPro.. (original name was: gnl|Prokka|BIGFKLDO_18); c00019_gnlPro.. (original name was: gnl|Prokka|BIGFKLDO_19); c00020_gnlPro.. (original name was: gnl|Prokka|BIGFKLDO_20); c00022_gnlPro.. (original name was: gnl|Prokka|BIGFKLDO_22); c00023_gnlPro.. (original name was: gnl|Prokka|BIGFKLDO_23); c00024_gnlPro.. (original name was: gnl|Prokka|BIGFKLDO_24); c00025_gnlPro.. (original name was: gnl|Prokka|BIGFKLDO_25); c00026_gnlPro.. (original name was: gnl|Prokka|BIGFKLDO_26); c00027_gnlPro.. (original name was: gnl|Prokka|BIGFKLDO_27); c00028_gnlPro.. (original name was: gnl|Prokka|BIGFKLDO_28); c00029_gnlPro.. (original name was: gnl|Prokka|BIGFKLDO_29); c00030_gnlPro.. (original name was: gnl|Prokka|BIGFKLDO_30); c00031_gnlPro.. (original name was: gnl|Prokka|BIGFKLDO_31); c00032_gnlPro.. (original name was: gnl|Prokka|BIGFKLDO_32); c00033_gnlPro.. (original name was: gnl|Prokka|BIGFKLDO_33); c00034_gnlPro.. (original name was: gnl|Prokka|BIGFKLDO_34); c00035_gnlPro.. (original name was: gnl|Prokka|BIGFKLDO_35); c00036_gnlPro.. (original name was: gnl|Prokka|BIGFKLDO_36); c00037_gnlPro.. (original name was: gnl|Prokka|BIGFKLDO_37); c00038_gnlPro.. (original name was: gnl|Prokka|BIGFKLDO_38); c00039_gnlPro.. (original name was: gnl|Prokka|BIGFKLDO_39); c00040_gnlPro.. (original name was: gnl|Prokka|BIGFKLDO_40); c00041_gnlPro.. (original name was: gnl|Prokka|BIGFKLDO_41); c00042_gnlPro.. (original name was: gnl|Prokka|BIGFKLDO_42); c00043_gnlPro.. (original name was: gnl|Prokka|BIGFKLDO_43); c00044_gnlPro.. (original name was: gnl|Prokka|BIGFKLDO_44); c00045_gnlPro.. (original name was: gnl|Prokka|BIGFKLDO_45); c00046_gnlPro.. (original name was: gnl|Prokka|BIGFKLDO_46); c00047_gnlPro.. (original name was: gnl|Prokka|BIGFKLDO_47); c00048_gnlPro.. (original name was: gnl|Prokka|BIGFKLDO_48); c00049_gnlPro.. (original name was: gnl|Prokka|BIGFKLDO_49); c00050_gnlPro.. (original name was: gnl|Prokka|BIGFKLDO_50); c00051_gnlPro.. (original name was: gnl|Prokka|BIGFKLDO_51); c00052_gnlPro.. (original name was: gnl|Prokka|BIGFKLDO_52); c00053_gnlPro.. (original name was: gnl|Prokka|BIGFKLDO_53); c00054_gnlPro.. (original name was: gnl|Prokka|BIGFKLDO_54)

Compact view

c00001_gnlPro.. - Region 1 - acetate2butyrate

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Location: 44,858 - 71,100 nt. (total: 26,243 nt) Show pHMM detection rules used

acetate2butyrate: (not (POR or POR_N or PFOR_II) and minimum(4, [Acyl-CoA_dh_1, Acyl-CoA_dh_2, ECH_2, ETF, ETF_alpha, HCDH_N, Thiolase_N, ketoacyl-synt]) and HCDH and minimum(1, [EC1_2-faecali, ECH1_Enoyl_CoA_DH1, ECH1_Enoyl_CoA_DH2, ECH1_Enoyl_CoA_DH3, ECH1_Enoyl_CoA_DH4, Thiolase_C]))

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c00003_gnlPro.. - Region 1 - Pyruvate2acetate-formate

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Location: 45,343 - 68,334 nt. (total: 22,992 nt) Show pHMM detection rules used

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

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core biosynthetic genes

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c00003_gnlPro.. - Region 2 - Rnf_complex

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Location: 87,075 - 112,022 nt. (total: 24,948 nt) Show pHMM detection rules used

Rnf_complex: (Complex1_51K and minimum(5, [FMN_bind, FeS, Fer4, Fer4_9, NQR2_RnfD_RnfE, Rnf-Nqr, RnfC_N, SLBB]))

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c00004_gnlPro.. - Region 1 - Others_HGD_unassigned

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Location: 61,835 - 92,795 nt. (total: 30,961 nt) Show pHMM detection rules used

Others_HGD_unassigned: (minimum(1, [HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Lactoyl-CoA1, Lactoyl-CoA2]) and minimum(1, [ACP_syn_III, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AdoHcyase_NAD, AlaDh_PNT_C, BcrAD_BadFG, Biotin_lipoyl, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_6_Glutaconate, CoA_transf_3, ECH_1, ECH_2, ETF, ETF_alpha, FGGY_C, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, Mal_decarbox_Al, Peptidase_M22, Peptidase_M23, Thiolase_C, Thiolase_N, ketoacyl-synt]) and not (minimum(2, [AcetylCoA_hyd_C, BcrAD_BadFG, CoA_trans, CoA_trans_230_acto, Mal_decarbox_Al]) and Lactoyl-CoA2 and Lactoyl-CoA1) and not (minimum(4, [ACP_syn_III, ACP_syn_III_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AlaDh_PNT_C, BcrAD_BadFG, ECH_1, ECH_2, ETF, ETF_alpha, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, IlvN, NAD_Gly3P_dh_N, Thiolase_C, Thiolase_N, ketoacyl-synt]) and HAAA1 and not HleuS1))

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

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No matches found.

c00008_gnlPro.. - Region 1 - Putrescine2spermidine

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Location: 64,479 - 84,717 nt. (total: 20,239 nt) Show pHMM detection rules used

Region on contig edge.

Putrescine2spermidine: (minimum(2, [AdoMet_dc, Spermine_synt_N, Spermine_synth]) or (Orn_DAP_Arg_deC and Sacchrp_dh_C))

Legend:

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regulatory genes

resistance genes

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KnownClusterBlast

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c00021_gnlPro.. - Region 1 - TPP_AA_metabolism

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Location: 21,144 - 41,428 nt. (total: 20,285 nt) Show pHMM detection rules used

Region on contig edge.

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

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core biosynthetic genes

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regulatory genes

resistance genes

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electron transport genes

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