GCA_934826265.1 - 8 region(s)

Identified primary metabolite regions

c00003_gnlPro.. (original name was: gnl|Prokka|HENEKMOD_3)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 3.1	Pyruvate2acetate-formate	SCFA	3,602	26,577	Pyruvate to acetate-formate E. coli	PFL_acetate	100%

c00004_gnlPro.. (original name was: gnl|Prokka|HENEKMOD_4)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 4.1	Fumarate2succinate	SCFA	12,857	36,327	Fumarate to succinate B. thetaiotaomicron	SUC	100%

c00017_gnlPro.. (original name was: gnl|Prokka|HENEKMOD_17)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 17.1	Rnf_complex	E-MGC	27,405	52,465	Rnf complex C. sporogenes	RNF	83%

c00024_gnlPro.. (original name was: gnl|Prokka|HENEKMOD_24)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 24.1	porA	SCFA	21,372	44,207	porA C. sporogenes	POR	60%

c00028_gnlPro.. (original name was: gnl|Prokka|HENEKMOD_28)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 28.1	TPP_AA_metabolism	Putative	42,945	59,984

c00029_gnlPro.. (original name was: gnl|Prokka|HENEKMOD_29)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 29.1	succinate2propionate	SCFA	21,072	45,600	Succinate to propionate B. theta	PRO	50%

c00036_gnlPro.. (original name was: gnl|Prokka|HENEKMOD_36)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 36.1	TPP_fatty_acids	Putative	1	17,585

c00044_gnlPro.. (original name was: gnl|Prokka|HENEKMOD_44)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 44.1	OD_unknown	Putative	18,570	41,574

No primary metabolite regions were found in these records:: c00001_gnlPro.. (original name was: gnl|Prokka|HENEKMOD_1); c00002_gnlPro.. (original name was: gnl|Prokka|HENEKMOD_2); c00005_gnlPro.. (original name was: gnl|Prokka|HENEKMOD_5); c00006_gnlPro.. (original name was: gnl|Prokka|HENEKMOD_6); c00007_gnlPro.. (original name was: gnl|Prokka|HENEKMOD_7); c00008_gnlPro.. (original name was: gnl|Prokka|HENEKMOD_8); c00009_gnlPro.. (original name was: gnl|Prokka|HENEKMOD_9); c00010_gnlPro.. (original name was: gnl|Prokka|HENEKMOD_10); c00011_gnlPro.. (original name was: gnl|Prokka|HENEKMOD_11); c00012_gnlPro.. (original name was: gnl|Prokka|HENEKMOD_12); c00013_gnlPro.. (original name was: gnl|Prokka|HENEKMOD_13); c00014_gnlPro.. (original name was: gnl|Prokka|HENEKMOD_14); c00015_gnlPro.. (original name was: gnl|Prokka|HENEKMOD_15); c00016_gnlPro.. (original name was: gnl|Prokka|HENEKMOD_16); c00018_gnlPro.. (original name was: gnl|Prokka|HENEKMOD_18); c00019_gnlPro.. (original name was: gnl|Prokka|HENEKMOD_19); c00020_gnlPro.. (original name was: gnl|Prokka|HENEKMOD_20); c00021_gnlPro.. (original name was: gnl|Prokka|HENEKMOD_21); c00022_gnlPro.. (original name was: gnl|Prokka|HENEKMOD_22); c00023_gnlPro.. (original name was: gnl|Prokka|HENEKMOD_23); c00025_gnlPro.. (original name was: gnl|Prokka|HENEKMOD_25); c00026_gnlPro.. (original name was: gnl|Prokka|HENEKMOD_26); c00027_gnlPro.. (original name was: gnl|Prokka|HENEKMOD_27); c00030_gnlPro.. (original name was: gnl|Prokka|HENEKMOD_30); c00031_gnlPro.. (original name was: gnl|Prokka|HENEKMOD_31); c00032_gnlPro.. (original name was: gnl|Prokka|HENEKMOD_32); c00033_gnlPro.. (original name was: gnl|Prokka|HENEKMOD_33); c00034_gnlPro.. (original name was: gnl|Prokka|HENEKMOD_34); c00035_gnlPro.. (original name was: gnl|Prokka|HENEKMOD_35); c00037_gnlPro.. (original name was: gnl|Prokka|HENEKMOD_37); c00038_gnlPro.. (original name was: gnl|Prokka|HENEKMOD_38); c00039_gnlPro.. (original name was: gnl|Prokka|HENEKMOD_39); c00040_gnlPro.. (original name was: gnl|Prokka|HENEKMOD_40); c00041_gnlPro.. (original name was: gnl|Prokka|HENEKMOD_41); c00042_gnlPro.. (original name was: gnl|Prokka|HENEKMOD_42); c00043_gnlPro.. (original name was: gnl|Prokka|HENEKMOD_43); c00045_gnlPro.. (original name was: gnl|Prokka|HENEKMOD_45); c00046_gnlPro.. (original name was: gnl|Prokka|HENEKMOD_46); c00047_gnlPro.. (original name was: gnl|Prokka|HENEKMOD_47); c00048_gnlPro.. (original name was: gnl|Prokka|HENEKMOD_48); c00049_gnlPro.. (original name was: gnl|Prokka|HENEKMOD_49); c00050_gnlPro.. (original name was: gnl|Prokka|HENEKMOD_50); c00051_gnlPro.. (original name was: gnl|Prokka|HENEKMOD_51); c00052_gnlPro.. (original name was: gnl|Prokka|HENEKMOD_52); c00053_gnlPro.. (original name was: gnl|Prokka|HENEKMOD_53); c00054_gnlPro.. (original name was: gnl|Prokka|HENEKMOD_54); c00055_gnlPro.. (original name was: gnl|Prokka|HENEKMOD_55); c00056_gnlPro.. (original name was: gnl|Prokka|HENEKMOD_56); c00057_gnlPro.. (original name was: gnl|Prokka|HENEKMOD_57); c00058_gnlPro.. (original name was: gnl|Prokka|HENEKMOD_58); c00059_gnlPro.. (original name was: gnl|Prokka|HENEKMOD_59); c00060_gnlPro.. (original name was: gnl|Prokka|HENEKMOD_60); c00061_gnlPro.. (original name was: gnl|Prokka|HENEKMOD_61); c00062_gnlPro.. (original name was: gnl|Prokka|HENEKMOD_62); c00063_gnlPro.. (original name was: gnl|Prokka|HENEKMOD_63); c00064_gnlPro.. (original name was: gnl|Prokka|HENEKMOD_64); c00065_gnlPro.. (original name was: gnl|Prokka|HENEKMOD_65); c00066_gnlPro.. (original name was: gnl|Prokka|HENEKMOD_66); c00067_gnlPro.. (original name was: gnl|Prokka|HENEKMOD_67); c00068_gnlPro.. (original name was: gnl|Prokka|HENEKMOD_68); c00069_gnlPro.. (original name was: gnl|Prokka|HENEKMOD_69); c00070_gnlPro.. (original name was: gnl|Prokka|HENEKMOD_70); c00071_gnlPro.. (original name was: gnl|Prokka|HENEKMOD_71); c00072_gnlPro.. (original name was: gnl|Prokka|HENEKMOD_72); c00073_gnlPro.. (original name was: gnl|Prokka|HENEKMOD_73); c00074_gnlPro.. (original name was: gnl|Prokka|HENEKMOD_74)

Compact view

c00003_gnlPro.. - Region 1 - Pyruvate2acetate-formate

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Location: 3,602 - 26,577 nt. (total: 22,976 nt) Show pHMM detection rules used

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

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c00004_gnlPro.. - Region 1 - Fumarate2succinate

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Location: 12,857 - 36,327 nt. (total: 23,471 nt) Show pHMM detection rules used

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

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c00017_gnlPro.. - Region 1 - Rnf_complex

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Location: 27,405 - 52,465 nt. (total: 25,061 nt) Show pHMM detection rules used

Rnf_complex: (Complex1_51K and minimum(5, [FMN_bind, FeS, Fer4, Fer4_9, NQR2_RnfD_RnfE, Rnf-Nqr, RnfC_N, SLBB]))

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c00024_gnlPro.. - Region 1 - porA

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Location: 21,372 - 44,207 nt. (total: 22,836 nt) Show pHMM detection rules used

porA: (Fer4_7 and TPP_enzyme_C and POR and POR_N and PFOR_II and not (EKR or Fer4_16))

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c00028_gnlPro.. - Region 1 - TPP_AA_metabolism

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Location: 42,945 - 59,984 nt. (total: 17,040 nt) Show pHMM detection rules used

Region on contig edge.

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

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No matches found.

c00029_gnlPro.. - Region 1 - succinate2propionate

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Location: 21,072 - 45,600 nt. (total: 24,529 nt) Show pHMM detection rules used

succinate2propionate: (minimum(4, [AcetylCoA_hyd_C, AcetylCoA_hydro, B12-binding, Biotin_lipoyl, Glyoxalase_4, HMGL-like, MM_CoA_mutase, MeaB, OAD_beta, OAD_gamma, PYC_OADA]) and minimum(1, [CT_Btheta, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, CT_Vparvula]) and not Cytidylate_kin)

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c00036_gnlPro.. - Region 1 - TPP_fatty_acids

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Location: 1 - 17,585 nt. (total: 17,585 nt) Show pHMM detection rules used

Region on contig edge.

TPP_fatty_acids: (TPP_enzyme_C and (minimum(2, [ACD1_car, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, Butyrate_kinase, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_2_CAF, CoA_trans_6_Glutaconate, E1_dh, ECH_1, ECH_2, HBT, HBT_2, HCDH, HpaB, Ketoacyl-synt_C, Thiolase_C, Thiolase_N, adh_short, adh_short_C2]) or FA_synthesis) and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and not (POR or POR_N))

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c00044_gnlPro.. - Region 1 - OD_unknown

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Location: 18,570 - 41,574 nt. (total: 23,005 nt) Show pHMM detection rules used

Region on contig edge.

OD_unknown: (minimum(1, [PFOR_II, POR, POR_N]) and minimum(2, [CoA_binding, CoA_binding_2, Ligase_CoA, PTAC, Succ_CoA_lig]) and not (Gly_radical_scatole or Gly_radical or Gly_430_pcre or Gly_8-9_TMA))

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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Gene details

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