Select genomic region:
Overview
1.1
6.1
27.1
37.1
40.1
63.1
78.1
85.1

### Identified primary metabolite regions

c00001_gnlPro.. (original name was: gnl|Prokka|PIJKPNMN_1)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 1.1 | Arginine2putrescine,Putrescine2spermidine | Aliphatic_amine | 33,745 | 64,792 | Putrescine2spermidine E. rectale | SPRM | 100%

c00006_gnlPro.. (original name was: gnl|Prokka|PIJKPNMN_6)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 6.1 | acetate2butyrate | SCFA | 47,132 | 64,919 | Acetate to butyrate C. sporogenes | BUT | 83%

c00027_gnlPro.. (original name was: gnl|Prokka|PIJKPNMN_27)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 27.1 | porA | SCFA | 12,227 | 30,706 | Ethanolamine degradation S. typhimurium | EUT | 15%

c00037_gnlPro.. (original name was: gnl|Prokka|PIJKPNMN_37)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 37.1 | Rnf_complex | E-MGC | 1 | 18,041 | Rnf complex C. sporogenes | RNF | 100%

c00040_gnlPro.. (original name was: gnl|Prokka|PIJKPNMN_40)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 40.1 | TPP_AA_metabolism | Putative | 6,910 | 24,256 |

c00063_gnlPro.. (original name was: gnl|Prokka|PIJKPNMN_63)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 63.1 | Pyruvate2acetate-formate | SCFA | 1 | 15,642 | Pyruvate to acetate and formate C. acetobutylicum | PFL_acetate | 100%

c00078_gnlPro.. (original name was: gnl|Prokka|PIJKPNMN_78)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 78.1 | succinate2propionate | SCFA | 1 | 13,412 | Succinate to propionate B. theta | PRO | 33%

c00085_gnlPro.. (original name was: gnl|Prokka|PIJKPNMN_85)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 85.1 | Others_HGD_unassigned | Putative | 1 | 11,342 |

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 1.1 | Arginine2putrescine,Putrescine2spermidine | Aliphatic_amine | 33,745 | 64,792 | Putrescine2spermidine E. rectale | SPRM | 100%
Region 6.1 | acetate2butyrate | SCFA | 47,132 | 64,919 | Acetate to butyrate C. sporogenes | BUT | 83%
Region 27.1 | porA | SCFA | 12,227 | 30,706 | Ethanolamine degradation S. typhimurium | EUT | 15%
Region 37.1 | Rnf_complex | E-MGC | 1 | 18,041 | Rnf complex C. sporogenes | RNF | 100%
Region 40.1 | TPP_AA_metabolism | Putative | 6,910 | 24,256 |
Region 63.1 | Pyruvate2acetate-formate | SCFA | 1 | 15,642 | Pyruvate to acetate and formate C. acetobutylicum | PFL_acetate | 100%
Region 78.1 | succinate2propionate | SCFA | 1 | 13,412 | Succinate to propionate B. theta | PRO | 33%
Region 85.1 | Others_HGD_unassigned | Putative | 1 | 11,342 |

No primary metabolite regions were found in these records:
  c00002_gnlPro.. (original name was: gnl|Prokka|PIJKPNMN_2)
  c00003_gnlPro.. (original name was: gnl|Prokka|PIJKPNMN_3)
  c00004_gnlPro.. (original name was: gnl|Prokka|PIJKPNMN_4)
  c00005_gnlPro.. (original name was: gnl|Prokka|PIJKPNMN_5)
  c00007_gnlPro.. (original name was: gnl|Prokka|PIJKPNMN_7)
  c00008_gnlPro.. (original name was: gnl|Prokka|PIJKPNMN_8)
  c00009_gnlPro.. (original name was: gnl|Prokka|PIJKPNMN_9)
  c00010_gnlPro.. (original name was: gnl|Prokka|PIJKPNMN_10)
  c00011_gnlPro.. (original name was: gnl|Prokka|PIJKPNMN_11)
  c00012_gnlPro.. (original name was: gnl|Prokka|PIJKPNMN_12)
  c00013_gnlPro.. (original name was: gnl|Prokka|PIJKPNMN_13)
  c00014_gnlPro.. (original name was: gnl|Prokka|PIJKPNMN_14)
  c00015_gnlPro.. (original name was: gnl|Prokka|PIJKPNMN_15)
  c00016_gnlPro.. (original name was: gnl|Prokka|PIJKPNMN_16)
  c00017_gnlPro.. (original name was: gnl|Prokka|PIJKPNMN_17)
  c00018_gnlPro.. (original name was: gnl|Prokka|PIJKPNMN_18)
  c00019_gnlPro.. (original name was: gnl|Prokka|PIJKPNMN_19)
  c00020_gnlPro.. (original name was: gnl|Prokka|PIJKPNMN_20)
  c00021_gnlPro.. (original name was: gnl|Prokka|PIJKPNMN_21)
  c00022_gnlPro.. (original name was: gnl|Prokka|PIJKPNMN_22)
  c00023_gnlPro.. (original name was: gnl|Prokka|PIJKPNMN_23)
  c00024_gnlPro.. (original name was: gnl|Prokka|PIJKPNMN_24)
  c00025_gnlPro.. (original name was: gnl|Prokka|PIJKPNMN_25)
  c00026_gnlPro.. (original name was: gnl|Prokka|PIJKPNMN_26)
  c00028_gnlPro.. (original name was: gnl|Prokka|PIJKPNMN_28)
  c00029_gnlPro.. (original name was: gnl|Prokka|PIJKPNMN_29)
  c00030_gnlPro.. (original name was: gnl|Prokka|PIJKPNMN_30)
  c00031_gnlPro.. (original name was: gnl|Prokka|PIJKPNMN_31)
  c00032_gnlPro.. (original name was: gnl|Prokka|PIJKPNMN_32)
  c00033_gnlPro.. (original name was: gnl|Prokka|PIJKPNMN_33)
  c00034_gnlPro.. (original name was: gnl|Prokka|PIJKPNMN_34)
  c00035_gnlPro.. (original name was: gnl|Prokka|PIJKPNMN_35)
  c00036_gnlPro.. (original name was: gnl|Prokka|PIJKPNMN_36)
  c00038_gnlPro.. (original name was: gnl|Prokka|PIJKPNMN_38)
  c00039_gnlPro.. (original name was: gnl|Prokka|PIJKPNMN_39)
  c00041_gnlPro.. (original name was: gnl|Prokka|PIJKPNMN_41)
  c00042_gnlPro.. (original name was: gnl|Prokka|PIJKPNMN_42)
  c00043_gnlPro.. (original name was: gnl|Prokka|PIJKPNMN_43)
  c00044_gnlPro.. (original name was: gnl|Prokka|PIJKPNMN_44)
  c00045_gnlPro.. (original name was: gnl|Prokka|PIJKPNMN_45)
  c00046_gnlPro.. (original name was: gnl|Prokka|PIJKPNMN_46)
  c00047_gnlPro.. (original name was: gnl|Prokka|PIJKPNMN_47)
  c00048_gnlPro.. (original name was: gnl|Prokka|PIJKPNMN_48)
  c00049_gnlPro.. (original name was: gnl|Prokka|PIJKPNMN_49)
  c00050_gnlPro.. (original name was: gnl|Prokka|PIJKPNMN_50)
  c00051_gnlPro.. (original name was: gnl|Prokka|PIJKPNMN_51)
  c00052_gnlPro.. (original name was: gnl|Prokka|PIJKPNMN_52)
  c00053_gnlPro.. (original name was: gnl|Prokka|PIJKPNMN_53)
  c00054_gnlPro.. (original name was: gnl|Prokka|PIJKPNMN_54)
  c00055_gnlPro.. (original name was: gnl|Prokka|PIJKPNMN_55)
  c00056_gnlPro.. (original name was: gnl|Prokka|PIJKPNMN_56)
  c00057_gnlPro.. (original name was: gnl|Prokka|PIJKPNMN_57)
  c00058_gnlPro.. (original name was: gnl|Prokka|PIJKPNMN_58)
  c00059_gnlPro.. (original name was: gnl|Prokka|PIJKPNMN_59)
  c00060_gnlPro.. (original name was: gnl|Prokka|PIJKPNMN_60)
  c00061_gnlPro.. (original name was: gnl|Prokka|PIJKPNMN_61)
  c00062_gnlPro.. (original name was: gnl|Prokka|PIJKPNMN_62)
  c00064_gnlPro.. (original name was: gnl|Prokka|PIJKPNMN_64)
  c00065_gnlPro.. (original name was: gnl|Prokka|PIJKPNMN_65)
  c00066_gnlPro.. (original name was: gnl|Prokka|PIJKPNMN_66)
  c00067_gnlPro.. (original name was: gnl|Prokka|PIJKPNMN_67)
  c00068_gnlPro.. (original name was: gnl|Prokka|PIJKPNMN_68)
  c00069_gnlPro.. (original name was: gnl|Prokka|PIJKPNMN_69)
  c00070_gnlPro.. (original name was: gnl|Prokka|PIJKPNMN_70)
  c00071_gnlPro.. (original name was: gnl|Prokka|PIJKPNMN_71)
  c00072_gnlPro.. (original name was: gnl|Prokka|PIJKPNMN_72)
  c00073_gnlPro.. (original name was: gnl|Prokka|PIJKPNMN_73)
  c00074_gnlPro.. (original name was: gnl|Prokka|PIJKPNMN_74)
  c00075_gnlPro.. (original name was: gnl|Prokka|PIJKPNMN_75)
  c00076_gnlPro.. (original name was: gnl|Prokka|PIJKPNMN_76)
  c00077_gnlPro.. (original name was: gnl|Prokka|PIJKPNMN_77)
  c00079_gnlPro.. (original name was: gnl|Prokka|PIJKPNMN_79)
  c00080_gnlPro.. (original name was: gnl|Prokka|PIJKPNMN_80)
  c00081_gnlPro.. (original name was: gnl|Prokka|PIJKPNMN_81)
  c00082_gnlPro.. (original name was: gnl|Prokka|PIJKPNMN_82)
  c00083_gnlPro.. (original name was: gnl|Prokka|PIJKPNMN_83)
  c00084_gnlPro.. (original name was: gnl|Prokka|PIJKPNMN_84)
  c00086_gnlPro.. (original name was: gnl|Prokka|PIJKPNMN_86)
  c00087_gnlPro.. (original name was: gnl|Prokka|PIJKPNMN_87)
  c00088_gnlPro.. (original name was: gnl|Prokka|PIJKPNMN_88)
  c00089_gnlPro.. (original name was: gnl|Prokka|PIJKPNMN_89)
  c00090_gnlPro.. (original name was: gnl|Prokka|PIJKPNMN_90)
  c00091_gnlPro.. (original name was: gnl|Prokka|PIJKPNMN_91)
  c00092_gnlPro.. (original name was: gnl|Prokka|PIJKPNMN_92)
  c00093_gnlPro.. (original name was: gnl|Prokka|PIJKPNMN_93)
  c00094_gnlPro.. (original name was: gnl|Prokka|PIJKPNMN_94)
  c00095_gnlPro.. (original name was: gnl|Prokka|PIJKPNMN_95)
  c00096_gnlPro.. (original name was: gnl|Prokka|PIJKPNMN_96)
  c00097_gnlPro.. (original name was: gnl|Prokka|PIJKPNMN_97)
  c00098_gnlPro.. (original name was: gnl|Prokka|PIJKPNMN_98)
  c00099_gnlPro.. (original name was: gnl|Prokka|PIJKPNMN_99)
  c00100_gnlPro.. (original name was: gnl|Prokka|PIJKPNMN_100)
  c00101_gnlPro.. (original name was: gnl|Prokka|PIJKPNMN_101)
  c00102_gnlPro.. (original name was: gnl|Prokka|PIJKPNMN_102)
  c00103_gnlPro.. (original name was: gnl|Prokka|PIJKPNMN_103)
  c00104_gnlPro.. (original name was: gnl|Prokka|PIJKPNMN_104)
  c00105_gnlPro.. (original name was: gnl|Prokka|PIJKPNMN_105)
  c00106_gnlPro.. (original name was: gnl|Prokka|PIJKPNMN_106)
  c00107_gnlPro.. (original name was: gnl|Prokka|PIJKPNMN_107)
  c00108_gnlPro.. (original name was: gnl|Prokka|PIJKPNMN_108)
  c00109_gnlPro.. (original name was: gnl|Prokka|PIJKPNMN_109)
  c00110_gnlPro.. (original name was: gnl|Prokka|PIJKPNMN_110)
  c00111_gnlPro.. (original name was: gnl|Prokka|PIJKPNMN_111)
  c00112_gnlPro.. (original name was: gnl|Prokka|PIJKPNMN_112)
  c00113_gnlPro.. (original name was: gnl|Prokka|PIJKPNMN_113)
  c00114_gnlPro.. (original name was: gnl|Prokka|PIJKPNMN_114)
  c00115_gnlPro.. (original name was: gnl|Prokka|PIJKPNMN_115)
  c00116_gnlPro.. (original name was: gnl|Prokka|PIJKPNMN_116)
  c00117_gnlPro.. (original name was: gnl|Prokka|PIJKPNMN_117)
  c00118_gnlPro.. (original name was: gnl|Prokka|PIJKPNMN_118)
  c00119_gnlPro.. (original name was: gnl|Prokka|PIJKPNMN_119)
  c00120_gnlPro.. (original name was: gnl|Prokka|PIJKPNMN_120)
  c00121_gnlPro.. (original name was: gnl|Prokka|PIJKPNMN_121)
  c00122_gnlPro.. (original name was: gnl|Prokka|PIJKPNMN_122)
  c00123_gnlPro.. (original name was: gnl|Prokka|PIJKPNMN_123)
  c00124_gnlPro.. (original name was: gnl|Prokka|PIJKPNMN_124)
  c00125_gnlPro.. (original name was: gnl|Prokka|PIJKPNMN_125)
  c00126_gnlPro.. (original name was: gnl|Prokka|PIJKPNMN_126)
  c00127_gnlPro.. (original name was: gnl|Prokka|PIJKPNMN_127)
  c00128_gnlPro.. (original name was: gnl|Prokka|PIJKPNMN_128)

Compact view
c00001_gnlPro.. - Region 1 - Arginine2putrescine,Putrescine2spermidine
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 33,745 - 64,792 nt. (total: 31,048 nt) Show pHMM detection rules used
Arginine2putrescine: (minimum(3, [AdoMet_dc, Amidinotransf, Arginase, OKR_DC_1, OKR_DC_1_7_arginine, OTCace]) or ((OKR_DC_1_5_ornithine or OKR_DC_1 or Orn_Arg_deC_N) and minimum(1, [Arginase, OTCace, OTCace_N, PAD_porph])))
Putrescine2spermidine: (minimum(2, [AdoMet_dc, Spermine_synt_N, Spermine_synth]) or (Orn_DAP_Arg_deC and Sacchrp_dh_C))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
c00006_gnlPro.. - Region 1 - acetate2butyrate
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 47,132 - 64,919 nt. (total: 17,788 nt) Show pHMM detection rules used
Region on contig edge.
acetate2butyrate: (not (POR or POR_N or PFOR_II) and minimum(4, [Acyl-CoA_dh_1, Acyl-CoA_dh_2, ECH_2, ETF, ETF_alpha, HCDH_N, Thiolase_N, ketoacyl-synt]) and HCDH and minimum(1, [EC1_2-faecali, ECH1_Enoyl_CoA_DH1, ECH1_Enoyl_CoA_DH2, ECH1_Enoyl_CoA_DH3, ECH1_Enoyl_CoA_DH4, Thiolase_C]))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
c00027_gnlPro.. - Region 1 - porA
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 12,227 - 30,706 nt. (total: 18,480 nt) Show pHMM detection rules used
Region on contig edge.
porA: (Fer4_7 and TPP_enzyme_C and POR and POR_N and PFOR_II and not (EKR or Fer4_16))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
c00037_gnlPro.. - Region 1 - Rnf_complex
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 1 - 18,041 nt. (total: 18,041 nt) Show pHMM detection rules used
Region on contig edge.
Rnf_complex: (Complex1_51K and minimum(5, [FMN_bind, FeS, Fer4, Fer4_9, NQR2_RnfD_RnfE, Rnf-Nqr, RnfC_N, SLBB]))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
c00040_gnlPro.. - Region 1 - TPP_AA_metabolism
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 6,910 - 24,256 nt. (total: 17,347 nt) Show pHMM detection rules used
Region on contig edge.
TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.

No matches found.

c00063_gnlPro.. - Region 1 - Pyruvate2acetate-formate
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 1 - 15,642 nt. (total: 15,642 nt) Show pHMM detection rules used
Region on contig edge.
Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
c00078_gnlPro.. - Region 1 - succinate2propionate
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 1 - 13,412 nt. (total: 13,412 nt) Show pHMM detection rules used
Region on contig edge.
succinate2propionate: (minimum(4, [AcetylCoA_hyd_C, AcetylCoA_hydro, B12-binding, Biotin_lipoyl, Glyoxalase_4, HMGL-like, MM_CoA_mutase, MeaB, OAD_beta, OAD_gamma, PYC_OADA]) and minimum(1, [CT_Btheta, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, CT_Vparvula]) and not Cytidylate_kin)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
c00085_gnlPro.. - Region 1 - Others_HGD_unassigned
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 1 - 11,342 nt. (total: 11,342 nt) Show pHMM detection rules used
Region on contig edge.
Others_HGD_unassigned: (minimum(1, [HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Lactoyl-CoA1, Lactoyl-CoA2]) and minimum(1, [ACP_syn_III, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AdoHcyase_NAD, AlaDh_PNT_C, BcrAD_BadFG, Biotin_lipoyl, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_6_Glutaconate, CoA_transf_3, ECH_1, ECH_2, ETF, ETF_alpha, FGGY_C, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, Mal_decarbox_Al, Peptidase_M22, Peptidase_M23, Thiolase_C, Thiolase_N, ketoacyl-synt]) and not (minimum(2, [AcetylCoA_hyd_C, BcrAD_BadFG, CoA_trans, CoA_trans_230_acto, Mal_decarbox_Al]) and Lactoyl-CoA2 and Lactoyl-CoA1) and not (minimum(4, [ACP_syn_III, ACP_syn_III_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AlaDh_PNT_C, BcrAD_BadFG, ECH_1, ECH_2, ETF, ETF_alpha, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, IlvN, NAD_Gly3P_dh_N, Thiolase_C, Thiolase_N, ketoacyl-synt]) and HAAA1 and not HleuS1))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
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