Select genomic region:
Overview
7.1
11.1
34.1
59.1
71.1

### Identified primary metabolite regions

c00007_gnlPro.. (original name was: gnl|Prokka|OAABFJBE_7)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 7.1 | GR_AA_metabolism | Putative | 16,186 | 36,438 |

c00011_gnlPro.. (original name was: gnl|Prokka|OAABFJBE_11)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 11.1 | Rnf_complex | E-MGC | 14,496 | 30,749 | Rnf complex C. sporogenes | RNF | 100%

c00034_gnlPro.. (original name was: gnl|Prokka|OAABFJBE_34)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 34.1 | Putrescine2spermidine | Aliphatic_amine | 1,386 | 16,542 | Putrescine2spermidine E. rectale | SPRM | 100%

c00059_gnlPro.. (original name was: gnl|Prokka|OAABFJBE_59)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 59.1 | Others_HGD_unassigned | Putative | 1 | 10,276 |

c00071_gnlPro.. (original name was: gnl|Prokka|OAABFJBE_71)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 71.1 | Rnf_complex | E-MGC | 1 | 8,619 | Acetyl-CoA pathway B. hydrogenotrophica | Acetate | 14%

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 7.1 | GR_AA_metabolism | Putative | 16,186 | 36,438 |
Region 11.1 | Rnf_complex | E-MGC | 14,496 | 30,749 | Rnf complex C. sporogenes | RNF | 100%
Region 34.1 | Putrescine2spermidine | Aliphatic_amine | 1,386 | 16,542 | Putrescine2spermidine E. rectale | SPRM | 100%
Region 59.1 | Others_HGD_unassigned | Putative | 1 | 10,276 |
Region 71.1 | Rnf_complex | E-MGC | 1 | 8,619 | Acetyl-CoA pathway B. hydrogenotrophica | Acetate | 14%

No primary metabolite regions were found in these records:
  c00001_gnlPro.. (original name was: gnl|Prokka|OAABFJBE_1)
  c00002_gnlPro.. (original name was: gnl|Prokka|OAABFJBE_2)
  c00003_gnlPro.. (original name was: gnl|Prokka|OAABFJBE_3)
  c00004_gnlPro.. (original name was: gnl|Prokka|OAABFJBE_4)
  c00005_gnlPro.. (original name was: gnl|Prokka|OAABFJBE_5)
  c00006_gnlPro.. (original name was: gnl|Prokka|OAABFJBE_6)
  c00008_gnlPro.. (original name was: gnl|Prokka|OAABFJBE_8)
  c00009_gnlPro.. (original name was: gnl|Prokka|OAABFJBE_9)
  c00010_gnlPro.. (original name was: gnl|Prokka|OAABFJBE_10)
  c00012_gnlPro.. (original name was: gnl|Prokka|OAABFJBE_12)
  c00013_gnlPro.. (original name was: gnl|Prokka|OAABFJBE_13)
  c00014_gnlPro.. (original name was: gnl|Prokka|OAABFJBE_14)
  c00015_gnlPro.. (original name was: gnl|Prokka|OAABFJBE_15)
  c00016_gnlPro.. (original name was: gnl|Prokka|OAABFJBE_16)
  c00017_gnlPro.. (original name was: gnl|Prokka|OAABFJBE_17)
  c00018_gnlPro.. (original name was: gnl|Prokka|OAABFJBE_18)
  c00019_gnlPro.. (original name was: gnl|Prokka|OAABFJBE_19)
  c00020_gnlPro.. (original name was: gnl|Prokka|OAABFJBE_20)
  c00021_gnlPro.. (original name was: gnl|Prokka|OAABFJBE_21)
  c00022_gnlPro.. (original name was: gnl|Prokka|OAABFJBE_22)
  c00023_gnlPro.. (original name was: gnl|Prokka|OAABFJBE_23)
  c00024_gnlPro.. (original name was: gnl|Prokka|OAABFJBE_24)
  c00025_gnlPro.. (original name was: gnl|Prokka|OAABFJBE_25)
  c00026_gnlPro.. (original name was: gnl|Prokka|OAABFJBE_26)
  c00027_gnlPro.. (original name was: gnl|Prokka|OAABFJBE_27)
  c00028_gnlPro.. (original name was: gnl|Prokka|OAABFJBE_28)
  c00029_gnlPro.. (original name was: gnl|Prokka|OAABFJBE_29)
  c00030_gnlPro.. (original name was: gnl|Prokka|OAABFJBE_30)
  c00031_gnlPro.. (original name was: gnl|Prokka|OAABFJBE_31)
  c00032_gnlPro.. (original name was: gnl|Prokka|OAABFJBE_32)
  c00033_gnlPro.. (original name was: gnl|Prokka|OAABFJBE_33)
  c00035_gnlPro.. (original name was: gnl|Prokka|OAABFJBE_35)
  c00036_gnlPro.. (original name was: gnl|Prokka|OAABFJBE_36)
  c00037_gnlPro.. (original name was: gnl|Prokka|OAABFJBE_37)
  c00038_gnlPro.. (original name was: gnl|Prokka|OAABFJBE_38)
  c00039_gnlPro.. (original name was: gnl|Prokka|OAABFJBE_39)
  c00040_gnlPro.. (original name was: gnl|Prokka|OAABFJBE_40)
  c00041_gnlPro.. (original name was: gnl|Prokka|OAABFJBE_41)
  c00042_gnlPro.. (original name was: gnl|Prokka|OAABFJBE_42)
  c00043_gnlPro.. (original name was: gnl|Prokka|OAABFJBE_43)
  c00044_gnlPro.. (original name was: gnl|Prokka|OAABFJBE_44)
  c00045_gnlPro.. (original name was: gnl|Prokka|OAABFJBE_45)
  c00046_gnlPro.. (original name was: gnl|Prokka|OAABFJBE_46)
  c00047_gnlPro.. (original name was: gnl|Prokka|OAABFJBE_47)
  c00048_gnlPro.. (original name was: gnl|Prokka|OAABFJBE_48)
  c00049_gnlPro.. (original name was: gnl|Prokka|OAABFJBE_49)
  c00050_gnlPro.. (original name was: gnl|Prokka|OAABFJBE_50)
  c00051_gnlPro.. (original name was: gnl|Prokka|OAABFJBE_51)
  c00052_gnlPro.. (original name was: gnl|Prokka|OAABFJBE_52)
  c00053_gnlPro.. (original name was: gnl|Prokka|OAABFJBE_53)
  c00054_gnlPro.. (original name was: gnl|Prokka|OAABFJBE_54)
  c00055_gnlPro.. (original name was: gnl|Prokka|OAABFJBE_55)
  c00056_gnlPro.. (original name was: gnl|Prokka|OAABFJBE_56)
  c00057_gnlPro.. (original name was: gnl|Prokka|OAABFJBE_57)
  c00058_gnlPro.. (original name was: gnl|Prokka|OAABFJBE_58)
  c00060_gnlPro.. (original name was: gnl|Prokka|OAABFJBE_60)
  c00061_gnlPro.. (original name was: gnl|Prokka|OAABFJBE_61)
  c00062_gnlPro.. (original name was: gnl|Prokka|OAABFJBE_62)
  c00063_gnlPro.. (original name was: gnl|Prokka|OAABFJBE_63)
  c00064_gnlPro.. (original name was: gnl|Prokka|OAABFJBE_64)
  c00065_gnlPro.. (original name was: gnl|Prokka|OAABFJBE_65)
  c00066_gnlPro.. (original name was: gnl|Prokka|OAABFJBE_66)
  c00067_gnlPro.. (original name was: gnl|Prokka|OAABFJBE_67)
  c00068_gnlPro.. (original name was: gnl|Prokka|OAABFJBE_68)
  c00069_gnlPro.. (original name was: gnl|Prokka|OAABFJBE_69)
  c00070_gnlPro.. (original name was: gnl|Prokka|OAABFJBE_70)
  c00072_gnlPro.. (original name was: gnl|Prokka|OAABFJBE_72)
  c00073_gnlPro.. (original name was: gnl|Prokka|OAABFJBE_73)
  c00074_gnlPro.. (original name was: gnl|Prokka|OAABFJBE_74)
  c00075_gnlPro.. (original name was: gnl|Prokka|OAABFJBE_75)
  c00076_gnlPro.. (original name was: gnl|Prokka|OAABFJBE_76)
  c00077_gnlPro.. (original name was: gnl|Prokka|OAABFJBE_77)
  c00078_gnlPro.. (original name was: gnl|Prokka|OAABFJBE_78)
  c00079_gnlPro.. (original name was: gnl|Prokka|OAABFJBE_79)
  c00080_gnlPro.. (original name was: gnl|Prokka|OAABFJBE_80)
  c00081_gnlPro.. (original name was: gnl|Prokka|OAABFJBE_81)
  c00082_gnlPro.. (original name was: gnl|Prokka|OAABFJBE_82)
  c00083_gnlPro.. (original name was: gnl|Prokka|OAABFJBE_83)
  c00084_gnlPro.. (original name was: gnl|Prokka|OAABFJBE_84)
  c00085_gnlPro.. (original name was: gnl|Prokka|OAABFJBE_85)
  c00086_gnlPro.. (original name was: gnl|Prokka|OAABFJBE_86)
  c00087_gnlPro.. (original name was: gnl|Prokka|OAABFJBE_87)
  c00088_gnlPro.. (original name was: gnl|Prokka|OAABFJBE_88)
  c00089_gnlPro.. (original name was: gnl|Prokka|OAABFJBE_89)
  c00090_gnlPro.. (original name was: gnl|Prokka|OAABFJBE_90)
  c00091_gnlPro.. (original name was: gnl|Prokka|OAABFJBE_91)
  c00092_gnlPro.. (original name was: gnl|Prokka|OAABFJBE_92)
  c00093_gnlPro.. (original name was: gnl|Prokka|OAABFJBE_93)
  c00094_gnlPro.. (original name was: gnl|Prokka|OAABFJBE_94)
  c00095_gnlPro.. (original name was: gnl|Prokka|OAABFJBE_95)
  c00096_gnlPro.. (original name was: gnl|Prokka|OAABFJBE_96)
  c00097_gnlPro.. (original name was: gnl|Prokka|OAABFJBE_97)
  c00098_gnlPro.. (original name was: gnl|Prokka|OAABFJBE_98)
  c00099_gnlPro.. (original name was: gnl|Prokka|OAABFJBE_99)
  c00100_gnlPro.. (original name was: gnl|Prokka|OAABFJBE_100)
  c00101_gnlPro.. (original name was: gnl|Prokka|OAABFJBE_101)
  c00102_gnlPro.. (original name was: gnl|Prokka|OAABFJBE_102)
  c00103_gnlPro.. (original name was: gnl|Prokka|OAABFJBE_103)
  c00104_gnlPro.. (original name was: gnl|Prokka|OAABFJBE_104)
  c00105_gnlPro.. (original name was: gnl|Prokka|OAABFJBE_105)
  c00106_gnlPro.. (original name was: gnl|Prokka|OAABFJBE_106)
  c00107_gnlPro.. (original name was: gnl|Prokka|OAABFJBE_107)
  c00108_gnlPro.. (original name was: gnl|Prokka|OAABFJBE_108)
  c00109_gnlPro.. (original name was: gnl|Prokka|OAABFJBE_109)
  c00110_gnlPro.. (original name was: gnl|Prokka|OAABFJBE_110)
  c00111_gnlPro.. (original name was: gnl|Prokka|OAABFJBE_111)
  c00112_gnlPro.. (original name was: gnl|Prokka|OAABFJBE_112)
  c00113_gnlPro.. (original name was: gnl|Prokka|OAABFJBE_113)
  c00114_gnlPro.. (original name was: gnl|Prokka|OAABFJBE_114)
  c00115_gnlPro.. (original name was: gnl|Prokka|OAABFJBE_115)
  c00116_gnlPro.. (original name was: gnl|Prokka|OAABFJBE_116)
  c00117_gnlPro.. (original name was: gnl|Prokka|OAABFJBE_117)
  c00118_gnlPro.. (original name was: gnl|Prokka|OAABFJBE_118)
  c00119_gnlPro.. (original name was: gnl|Prokka|OAABFJBE_119)
  c00120_gnlPro.. (original name was: gnl|Prokka|OAABFJBE_120)
  c00121_gnlPro.. (original name was: gnl|Prokka|OAABFJBE_121)
  c00122_gnlPro.. (original name was: gnl|Prokka|OAABFJBE_122)
  c00123_gnlPro.. (original name was: gnl|Prokka|OAABFJBE_123)
  c00124_gnlPro.. (original name was: gnl|Prokka|OAABFJBE_124)
  c00125_gnlPro.. (original name was: gnl|Prokka|OAABFJBE_125)
  c00126_gnlPro.. (original name was: gnl|Prokka|OAABFJBE_126)
  c00127_gnlPro.. (original name was: gnl|Prokka|OAABFJBE_127)
  c00128_gnlPro.. (original name was: gnl|Prokka|OAABFJBE_128)
  c00129_gnlPro.. (original name was: gnl|Prokka|OAABFJBE_129)
  c00130_gnlPro.. (original name was: gnl|Prokka|OAABFJBE_130)
  c00131_gnlPro.. (original name was: gnl|Prokka|OAABFJBE_131)
  c00132_gnlPro.. (original name was: gnl|Prokka|OAABFJBE_132)
  c00133_gnlPro.. (original name was: gnl|Prokka|OAABFJBE_133)
  c00134_gnlPro.. (original name was: gnl|Prokka|OAABFJBE_134)
  c00135_gnlPro.. (original name was: gnl|Prokka|OAABFJBE_135)
  c00136_gnlPro.. (original name was: gnl|Prokka|OAABFJBE_136)
  c00137_gnlPro.. (original name was: gnl|Prokka|OAABFJBE_137)
  c00138_gnlPro.. (original name was: gnl|Prokka|OAABFJBE_138)
  c00139_gnlPro.. (original name was: gnl|Prokka|OAABFJBE_139)
  c00140_gnlPro.. (original name was: gnl|Prokka|OAABFJBE_140)
  c00141_gnlPro.. (original name was: gnl|Prokka|OAABFJBE_141)
  c00142_gnlPro.. (original name was: gnl|Prokka|OAABFJBE_142)
  c00143_gnlPro.. (original name was: gnl|Prokka|OAABFJBE_143)
  c00144_gnlPro.. (original name was: gnl|Prokka|OAABFJBE_144)
  c00145_gnlPro.. (original name was: gnl|Prokka|OAABFJBE_145)
  c00146_gnlPro.. (original name was: gnl|Prokka|OAABFJBE_146)
  c00147_gnlPro.. (original name was: gnl|Prokka|OAABFJBE_147)
  c00148_gnlPro.. (original name was: gnl|Prokka|OAABFJBE_148)
  c00149_gnlPro.. (original name was: gnl|Prokka|OAABFJBE_149)

Compact view
c00007_gnlPro.. - Region 1 - GR_AA_metabolism
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 16,186 - 36,438 nt. (total: 20,253 nt) Show pHMM detection rules used
Region on contig edge.
GR_AA_metabolism: (minimum(1, [Gly_430_pcre, Gly_8-9_TMA, Gly_radical, Gly_radical_scatole, PFL-like, PFL_6_pcresol, PFL_9_tma, PFL_acetate1, PFL_acetate2, PFL_proline, PFL_toluene]) and not NRDD and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.

No matches found.

c00011_gnlPro.. - Region 1 - Rnf_complex
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 14,496 - 30,749 nt. (total: 16,254 nt) Show pHMM detection rules used
Region on contig edge.
Rnf_complex: (Complex1_51K and minimum(5, [FMN_bind, FeS, Fer4, Fer4_9, NQR2_RnfD_RnfE, Rnf-Nqr, RnfC_N, SLBB]))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
c00034_gnlPro.. - Region 1 - Putrescine2spermidine
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 1,386 - 16,542 nt. (total: 15,157 nt) Show pHMM detection rules used
Region on contig edge.
Putrescine2spermidine: (minimum(2, [AdoMet_dc, Spermine_synt_N, Spermine_synth]) or (Orn_DAP_Arg_deC and Sacchrp_dh_C))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
c00059_gnlPro.. - Region 1 - Others_HGD_unassigned
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 1 - 10,276 nt. (total: 10,276 nt) Show pHMM detection rules used
Region on contig edge.
Others_HGD_unassigned: (minimum(1, [HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Lactoyl-CoA1, Lactoyl-CoA2]) and minimum(1, [ACP_syn_III, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AdoHcyase_NAD, AlaDh_PNT_C, BcrAD_BadFG, Biotin_lipoyl, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_6_Glutaconate, CoA_transf_3, ECH_1, ECH_2, ETF, ETF_alpha, FGGY_C, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, Mal_decarbox_Al, Peptidase_M22, Peptidase_M23, Thiolase_C, Thiolase_N, ketoacyl-synt]) and not (minimum(2, [AcetylCoA_hyd_C, BcrAD_BadFG, CoA_trans, CoA_trans_230_acto, Mal_decarbox_Al]) and Lactoyl-CoA2 and Lactoyl-CoA1) and not (minimum(4, [ACP_syn_III, ACP_syn_III_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AlaDh_PNT_C, BcrAD_BadFG, ECH_1, ECH_2, ETF, ETF_alpha, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, IlvN, NAD_Gly3P_dh_N, Thiolase_C, Thiolase_N, ketoacyl-synt]) and HAAA1 and not HleuS1))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.

No matches found.

c00071_gnlPro.. - Region 1 - Rnf_complex
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 1 - 8,619 nt. (total: 8,619 nt) Show pHMM detection rules used
Region on contig edge.
Rnf_complex: (Complex1_51K and minimum(5, [FMN_bind, FeS, Fer4, Fer4_9, NQR2_RnfD_RnfE, Rnf-Nqr, RnfC_N, SLBB]))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.