Select genomic region:
Overview
4.1
5.1
6.1

### Identified primary metabolite regions

c00004_gnlPro.. (original name was: gnl|Prokka|MKCBKEGC_4)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 4.1 | OD_AA_metabolism | Putative | 1,009 | 42,369 |

c00005_gnlPro.. (original name was: gnl|Prokka|MKCBKEGC_5)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 5.1 | Pyruvate2acetate-formate,PFOR_II_pathway | SCFA | 189,195 | 219,187 | Pyruvate to acetate-formate E. coli | PFL_acetate | 100%

c00006_gnlPro.. (original name was: gnl|Prokka|MKCBKEGC_6)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 6.1 | Others_HGD_unassigned | Putative | 19,486 | 43,732 |

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 4.1 | OD_AA_metabolism | Putative | 1,009 | 42,369 |
Region 5.1 | Pyruvate2acetate-formate,PFOR_II_pathway | SCFA | 189,195 | 219,187 | Pyruvate to acetate-formate E. coli | PFL_acetate | 100%
Region 6.1 | Others_HGD_unassigned | Putative | 19,486 | 43,732 |

No primary metabolite regions were found in these records:
  c00001_gnlPro.. (original name was: gnl|Prokka|MKCBKEGC_1)
  c00002_gnlPro.. (original name was: gnl|Prokka|MKCBKEGC_2)
  c00003_gnlPro.. (original name was: gnl|Prokka|MKCBKEGC_3)
  c00007_gnlPro.. (original name was: gnl|Prokka|MKCBKEGC_7)
  c00008_gnlPro.. (original name was: gnl|Prokka|MKCBKEGC_8)
  c00009_gnlPro.. (original name was: gnl|Prokka|MKCBKEGC_9)
  c00010_gnlPro.. (original name was: gnl|Prokka|MKCBKEGC_10)
  c00011_gnlPro.. (original name was: gnl|Prokka|MKCBKEGC_11)
  c00012_gnlPro.. (original name was: gnl|Prokka|MKCBKEGC_12)
  c00013_gnlPro.. (original name was: gnl|Prokka|MKCBKEGC_13)
  c00014_gnlPro.. (original name was: gnl|Prokka|MKCBKEGC_14)
  c00015_gnlPro.. (original name was: gnl|Prokka|MKCBKEGC_15)
  c00016_gnlPro.. (original name was: gnl|Prokka|MKCBKEGC_16)
  c00017_gnlPro.. (original name was: gnl|Prokka|MKCBKEGC_17)
  c00018_gnlPro.. (original name was: gnl|Prokka|MKCBKEGC_18)
  c00019_gnlPro.. (original name was: gnl|Prokka|MKCBKEGC_19)
  c00020_gnlPro.. (original name was: gnl|Prokka|MKCBKEGC_20)
  c00021_gnlPro.. (original name was: gnl|Prokka|MKCBKEGC_21)

Compact view
c00004_gnlPro.. - Region 1 - OD_AA_metabolism
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 1,009 - 42,369 nt. (total: 41,361 nt) Show pHMM detection rules used
OD_AA_metabolism: (minimum(1, [PFOR_II, POR, POR_N]) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (Gly_radical_scatole or Gly_radical or Gly_430_pcre or Gly_8-9_TMA))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.

No matches found.

c00005_gnlPro.. - Region 1 - PFOR_II_pathway,Pyruvate2acetate-formate
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 189,195 - 219,187 nt. (total: 29,993 nt) Show pHMM detection rules used
Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)
PFOR_II_pathway: cds(POR and POR_N and PFOR_II and EKR and Fer4_16 and TPP_enzyme_C)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
c00006_gnlPro.. - Region 1 - Others_HGD_unassigned
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 19,486 - 43,732 nt. (total: 24,247 nt) Show pHMM detection rules used
Others_HGD_unassigned: (minimum(1, [HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Lactoyl-CoA1, Lactoyl-CoA2]) and minimum(1, [ACP_syn_III, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AdoHcyase_NAD, AlaDh_PNT_C, BcrAD_BadFG, Biotin_lipoyl, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_6_Glutaconate, CoA_transf_3, ECH_1, ECH_2, ETF, ETF_alpha, FGGY_C, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, Mal_decarbox_Al, Peptidase_M22, Peptidase_M23, Thiolase_C, Thiolase_N, ketoacyl-synt]) and not (minimum(2, [AcetylCoA_hyd_C, BcrAD_BadFG, CoA_trans, CoA_trans_230_acto, Mal_decarbox_Al]) and Lactoyl-CoA2 and Lactoyl-CoA1) and not (minimum(4, [ACP_syn_III, ACP_syn_III_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AlaDh_PNT_C, BcrAD_BadFG, ECH_1, ECH_2, ETF, ETF_alpha, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, IlvN, NAD_Gly3P_dh_N, Thiolase_C, Thiolase_N, ketoacyl-synt]) and HAAA1 and not HleuS1))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.

No matches found.