GCA_934879215.1 - 4 region(s)

Identified primary metabolite regions

c00001_gnlPro.. (original name was: gnl|Prokka|DPOLIJOH_1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 1.1	Pyruvate2acetate-formate,PFOR_II_pathway	SCFA	167,657	197,649	Pyruvate to acetate-formate E. coli	PFL_acetate	100%

c00002_gnlPro.. (original name was: gnl|Prokka|DPOLIJOH_2)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 2.1	Others_HGD_unassigned	Putative	124,084	148,330

c00017_gnlPro.. (original name was: gnl|Prokka|DPOLIJOH_17)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 17.1	TPP_AA_metabolism	Putative	1	14,474

c00032_gnlPro.. (original name was: gnl|Prokka|DPOLIJOH_32)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 32.1	succinate2propionate	SCFA	2,021	17,084

No primary metabolite regions were found in these records:: c00003_gnlPro.. (original name was: gnl|Prokka|DPOLIJOH_3); c00004_gnlPro.. (original name was: gnl|Prokka|DPOLIJOH_4); c00005_gnlPro.. (original name was: gnl|Prokka|DPOLIJOH_5); c00006_gnlPro.. (original name was: gnl|Prokka|DPOLIJOH_6); c00007_gnlPro.. (original name was: gnl|Prokka|DPOLIJOH_7); c00008_gnlPro.. (original name was: gnl|Prokka|DPOLIJOH_8); c00009_gnlPro.. (original name was: gnl|Prokka|DPOLIJOH_9); c00010_gnlPro.. (original name was: gnl|Prokka|DPOLIJOH_10); c00011_gnlPro.. (original name was: gnl|Prokka|DPOLIJOH_11); c00012_gnlPro.. (original name was: gnl|Prokka|DPOLIJOH_12); c00013_gnlPro.. (original name was: gnl|Prokka|DPOLIJOH_13); c00014_gnlPro.. (original name was: gnl|Prokka|DPOLIJOH_14); c00015_gnlPro.. (original name was: gnl|Prokka|DPOLIJOH_15); c00016_gnlPro.. (original name was: gnl|Prokka|DPOLIJOH_16); c00018_gnlPro.. (original name was: gnl|Prokka|DPOLIJOH_18); c00019_gnlPro.. (original name was: gnl|Prokka|DPOLIJOH_19); c00020_gnlPro.. (original name was: gnl|Prokka|DPOLIJOH_20); c00021_gnlPro.. (original name was: gnl|Prokka|DPOLIJOH_21); c00022_gnlPro.. (original name was: gnl|Prokka|DPOLIJOH_22); c00023_gnlPro.. (original name was: gnl|Prokka|DPOLIJOH_23); c00024_gnlPro.. (original name was: gnl|Prokka|DPOLIJOH_24); c00025_gnlPro.. (original name was: gnl|Prokka|DPOLIJOH_25); c00026_gnlPro.. (original name was: gnl|Prokka|DPOLIJOH_26); c00027_gnlPro.. (original name was: gnl|Prokka|DPOLIJOH_27); c00028_gnlPro.. (original name was: gnl|Prokka|DPOLIJOH_28); c00029_gnlPro.. (original name was: gnl|Prokka|DPOLIJOH_29); c00030_gnlPro.. (original name was: gnl|Prokka|DPOLIJOH_30); c00031_gnlPro.. (original name was: gnl|Prokka|DPOLIJOH_31); c00033_gnlPro.. (original name was: gnl|Prokka|DPOLIJOH_33); c00034_gnlPro.. (original name was: gnl|Prokka|DPOLIJOH_34); c00035_gnlPro.. (original name was: gnl|Prokka|DPOLIJOH_35); c00036_gnlPro.. (original name was: gnl|Prokka|DPOLIJOH_36); c00037_gnlPro.. (original name was: gnl|Prokka|DPOLIJOH_37); c00038_gnlPro.. (original name was: gnl|Prokka|DPOLIJOH_38); c00039_gnlPro.. (original name was: gnl|Prokka|DPOLIJOH_39); c00040_gnlPro.. (original name was: gnl|Prokka|DPOLIJOH_40); c00041_gnlPro.. (original name was: gnl|Prokka|DPOLIJOH_41); c00042_gnlPro.. (original name was: gnl|Prokka|DPOLIJOH_42); c00043_gnlPro.. (original name was: gnl|Prokka|DPOLIJOH_43); c00044_gnlPro.. (original name was: gnl|Prokka|DPOLIJOH_44); c00045_gnlPro.. (original name was: gnl|Prokka|DPOLIJOH_45); c00046_gnlPro.. (original name was: gnl|Prokka|DPOLIJOH_46); c00047_gnlPro.. (original name was: gnl|Prokka|DPOLIJOH_47); c00048_gnlPro.. (original name was: gnl|Prokka|DPOLIJOH_48); c00049_gnlPro.. (original name was: gnl|Prokka|DPOLIJOH_49); c00050_gnlPro.. (original name was: gnl|Prokka|DPOLIJOH_50); c00051_gnlPro.. (original name was: gnl|Prokka|DPOLIJOH_51); c00052_gnlPro.. (original name was: gnl|Prokka|DPOLIJOH_52); c00053_gnlPro.. (original name was: gnl|Prokka|DPOLIJOH_53); c00054_gnlPro.. (original name was: gnl|Prokka|DPOLIJOH_54); c00055_gnlPro.. (original name was: gnl|Prokka|DPOLIJOH_55); c00056_gnlPro.. (original name was: gnl|Prokka|DPOLIJOH_56); c00057_gnlPro.. (original name was: gnl|Prokka|DPOLIJOH_57); c00058_gnlPro.. (original name was: gnl|Prokka|DPOLIJOH_58); c00059_gnlPro.. (original name was: gnl|Prokka|DPOLIJOH_59); c00060_gnlPro.. (original name was: gnl|Prokka|DPOLIJOH_60); c00061_gnlPro.. (original name was: gnl|Prokka|DPOLIJOH_61); c00062_gnlPro.. (original name was: gnl|Prokka|DPOLIJOH_62); c00063_gnlPro.. (original name was: gnl|Prokka|DPOLIJOH_63); c00064_gnlPro.. (original name was: gnl|Prokka|DPOLIJOH_64); c00065_gnlPro.. (original name was: gnl|Prokka|DPOLIJOH_65); c00066_gnlPro.. (original name was: gnl|Prokka|DPOLIJOH_66); c00067_gnlPro.. (original name was: gnl|Prokka|DPOLIJOH_67); c00068_gnlPro.. (original name was: gnl|Prokka|DPOLIJOH_68); c00069_gnlPro.. (original name was: gnl|Prokka|DPOLIJOH_69); c00070_gnlPro.. (original name was: gnl|Prokka|DPOLIJOH_70); c00071_gnlPro.. (original name was: gnl|Prokka|DPOLIJOH_71); c00072_gnlPro.. (original name was: gnl|Prokka|DPOLIJOH_72); c00073_gnlPro.. (original name was: gnl|Prokka|DPOLIJOH_73); c00074_gnlPro.. (original name was: gnl|Prokka|DPOLIJOH_74); c00075_gnlPro.. (original name was: gnl|Prokka|DPOLIJOH_75)

Compact view

c00001_gnlPro.. - Region 1 - PFOR_II_pathway,Pyruvate2acetate-formate

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Location: 167,657 - 197,649 nt. (total: 29,993 nt) Show pHMM detection rules used

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)
PFOR_II_pathway: cds(POR and POR_N and PFOR_II and EKR and Fer4_16 and TPP_enzyme_C)

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

c00002_gnlPro.. - Region 1 - Others_HGD_unassigned

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Location: 124,084 - 148,330 nt. (total: 24,247 nt) Show pHMM detection rules used

Others_HGD_unassigned: (minimum(1, [HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Lactoyl-CoA1, Lactoyl-CoA2]) and minimum(1, [ACP_syn_III, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AdoHcyase_NAD, AlaDh_PNT_C, BcrAD_BadFG, Biotin_lipoyl, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_6_Glutaconate, CoA_transf_3, ECH_1, ECH_2, ETF, ETF_alpha, FGGY_C, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, Mal_decarbox_Al, Peptidase_M22, Peptidase_M23, Thiolase_C, Thiolase_N, ketoacyl-synt]) and not (minimum(2, [AcetylCoA_hyd_C, BcrAD_BadFG, CoA_trans, CoA_trans_230_acto, Mal_decarbox_Al]) and Lactoyl-CoA2 and Lactoyl-CoA1) and not (minimum(4, [ACP_syn_III, ACP_syn_III_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AlaDh_PNT_C, BcrAD_BadFG, ECH_1, ECH_2, ETF, ETF_alpha, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, IlvN, NAD_Gly3P_dh_N, Thiolase_C, Thiolase_N, ketoacyl-synt]) and HAAA1 and not HleuS1))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.

c00017_gnlPro.. - Region 1 - TPP_AA_metabolism

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Location: 1 - 14,474 nt. (total: 14,474 nt) Show pHMM detection rules used

Region on contig edge.

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

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c00032_gnlPro.. - Region 1 - succinate2propionate

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Location: 2,021 - 17,084 nt. (total: 15,064 nt) Show pHMM detection rules used

Region on contig edge.

succinate2propionate: (minimum(4, [AcetylCoA_hyd_C, AcetylCoA_hydro, B12-binding, Biotin_lipoyl, Glyoxalase_4, HMGL-like, MM_CoA_mutase, MeaB, OAD_beta, OAD_gamma, PYC_OADA]) and minimum(1, [CT_Btheta, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, CT_Vparvula]) and not Cytidylate_kin)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.