GCA_934879245.1 - 8 region(s)

Identified primary metabolite regions

c00002_gnlPro.. (original name was: gnl|Prokka|FFKEFMOG_2)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 2.1	Pyruvate2acetate-formate	SCFA	6,581	29,630	Pyruvate to acetate-formate B. thetaiotaomicron	PFL_acetate	100%

c00009_gnlPro.. (original name was: gnl|Prokka|FFKEFMOG_9)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 9.1	porA	SCFA	1	21,914	porA C. sporogenes	POR	60%

c00010_gnlPro.. (original name was: gnl|Prokka|FFKEFMOG_10)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 10.1	NADH_dehydrogenase_I	E-MGC	28,051	58,045	NADH dehydrogenase I Bacteroides sp.	NADHD	47%

c00012_gnlPro.. (original name was: gnl|Prokka|FFKEFMOG_12)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 12.1	succinate2propionate	SCFA	51,367	69,573	Succinate to propionate A. sp. KLE1797	SUC	57%

c00014_gnlPro.. (original name was: gnl|Prokka|FFKEFMOG_14)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 14.1	Rnf_complex	E-MGC	17,811	43,138	Rnf complex C. sporogenes	RNF	83%

c00017_gnlPro.. (original name was: gnl|Prokka|FFKEFMOG_17)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 17.1	Fumarate2succinate	SCFA	20,103	43,524	Fumarate to succinate B. thetaiotaomicron	SUC	100%

c00027_gnlPro.. (original name was: gnl|Prokka|FFKEFMOG_27)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 27.1	TPP_AA_metabolism	Putative	1	20,912

c00040_gnlPro.. (original name was: gnl|Prokka|FFKEFMOG_40)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 40.1	Putrescine2spermidine	Aliphatic_amine	14,368	26,144	Putrescine2spermidine E. rectale	SPRM	40%

No primary metabolite regions were found in these records:: c00001_gnlPro.. (original name was: gnl|Prokka|FFKEFMOG_1); c00003_gnlPro.. (original name was: gnl|Prokka|FFKEFMOG_3); c00004_gnlPro.. (original name was: gnl|Prokka|FFKEFMOG_4); c00005_gnlPro.. (original name was: gnl|Prokka|FFKEFMOG_5); c00006_gnlPro.. (original name was: gnl|Prokka|FFKEFMOG_6); c00007_gnlPro.. (original name was: gnl|Prokka|FFKEFMOG_7); c00008_gnlPro.. (original name was: gnl|Prokka|FFKEFMOG_8); c00011_gnlPro.. (original name was: gnl|Prokka|FFKEFMOG_11); c00013_gnlPro.. (original name was: gnl|Prokka|FFKEFMOG_13); c00015_gnlPro.. (original name was: gnl|Prokka|FFKEFMOG_15); c00016_gnlPro.. (original name was: gnl|Prokka|FFKEFMOG_16); c00018_gnlPro.. (original name was: gnl|Prokka|FFKEFMOG_18); c00019_gnlPro.. (original name was: gnl|Prokka|FFKEFMOG_19); c00020_gnlPro.. (original name was: gnl|Prokka|FFKEFMOG_20); c00021_gnlPro.. (original name was: gnl|Prokka|FFKEFMOG_21); c00022_gnlPro.. (original name was: gnl|Prokka|FFKEFMOG_22); c00023_gnlPro.. (original name was: gnl|Prokka|FFKEFMOG_23); c00024_gnlPro.. (original name was: gnl|Prokka|FFKEFMOG_24); c00025_gnlPro.. (original name was: gnl|Prokka|FFKEFMOG_25); c00026_gnlPro.. (original name was: gnl|Prokka|FFKEFMOG_26); c00028_gnlPro.. (original name was: gnl|Prokka|FFKEFMOG_28); c00029_gnlPro.. (original name was: gnl|Prokka|FFKEFMOG_29); c00030_gnlPro.. (original name was: gnl|Prokka|FFKEFMOG_30); c00031_gnlPro.. (original name was: gnl|Prokka|FFKEFMOG_31); c00032_gnlPro.. (original name was: gnl|Prokka|FFKEFMOG_32); c00033_gnlPro.. (original name was: gnl|Prokka|FFKEFMOG_33); c00034_gnlPro.. (original name was: gnl|Prokka|FFKEFMOG_34); c00035_gnlPro.. (original name was: gnl|Prokka|FFKEFMOG_35); c00036_gnlPro.. (original name was: gnl|Prokka|FFKEFMOG_36); c00037_gnlPro.. (original name was: gnl|Prokka|FFKEFMOG_37); c00038_gnlPro.. (original name was: gnl|Prokka|FFKEFMOG_38); c00039_gnlPro.. (original name was: gnl|Prokka|FFKEFMOG_39); c00041_gnlPro.. (original name was: gnl|Prokka|FFKEFMOG_41); c00042_gnlPro.. (original name was: gnl|Prokka|FFKEFMOG_42); c00043_gnlPro.. (original name was: gnl|Prokka|FFKEFMOG_43); c00044_gnlPro.. (original name was: gnl|Prokka|FFKEFMOG_44); c00045_gnlPro.. (original name was: gnl|Prokka|FFKEFMOG_45); c00046_gnlPro.. (original name was: gnl|Prokka|FFKEFMOG_46); c00047_gnlPro.. (original name was: gnl|Prokka|FFKEFMOG_47); c00048_gnlPro.. (original name was: gnl|Prokka|FFKEFMOG_48); c00049_gnlPro.. (original name was: gnl|Prokka|FFKEFMOG_49); c00050_gnlPro.. (original name was: gnl|Prokka|FFKEFMOG_50); c00051_gnlPro.. (original name was: gnl|Prokka|FFKEFMOG_51); c00052_gnlPro.. (original name was: gnl|Prokka|FFKEFMOG_52); c00053_gnlPro.. (original name was: gnl|Prokka|FFKEFMOG_53); c00054_gnlPro.. (original name was: gnl|Prokka|FFKEFMOG_54); c00055_gnlPro.. (original name was: gnl|Prokka|FFKEFMOG_55); c00056_gnlPro.. (original name was: gnl|Prokka|FFKEFMOG_56); c00057_gnlPro.. (original name was: gnl|Prokka|FFKEFMOG_57); c00058_gnlPro.. (original name was: gnl|Prokka|FFKEFMOG_58); c00059_gnlPro.. (original name was: gnl|Prokka|FFKEFMOG_59); c00060_gnlPro.. (original name was: gnl|Prokka|FFKEFMOG_60); c00061_gnlPro.. (original name was: gnl|Prokka|FFKEFMOG_61); c00062_gnlPro.. (original name was: gnl|Prokka|FFKEFMOG_62); c00063_gnlPro.. (original name was: gnl|Prokka|FFKEFMOG_63); c00064_gnlPro.. (original name was: gnl|Prokka|FFKEFMOG_64); c00065_gnlPro.. (original name was: gnl|Prokka|FFKEFMOG_65); c00066_gnlPro.. (original name was: gnl|Prokka|FFKEFMOG_66); c00067_gnlPro.. (original name was: gnl|Prokka|FFKEFMOG_67); c00068_gnlPro.. (original name was: gnl|Prokka|FFKEFMOG_68); c00069_gnlPro.. (original name was: gnl|Prokka|FFKEFMOG_69); c00070_gnlPro.. (original name was: gnl|Prokka|FFKEFMOG_70); c00071_gnlPro.. (original name was: gnl|Prokka|FFKEFMOG_71); c00072_gnlPro.. (original name was: gnl|Prokka|FFKEFMOG_72); c00073_gnlPro.. (original name was: gnl|Prokka|FFKEFMOG_73); c00074_gnlPro.. (original name was: gnl|Prokka|FFKEFMOG_74); c00075_gnlPro.. (original name was: gnl|Prokka|FFKEFMOG_75); c00076_gnlPro.. (original name was: gnl|Prokka|FFKEFMOG_76); c00077_gnlPro.. (original name was: gnl|Prokka|FFKEFMOG_77); c00078_gnlPro.. (original name was: gnl|Prokka|FFKEFMOG_78); c00079_gnlPro.. (original name was: gnl|Prokka|FFKEFMOG_79); c00080_gnlPro.. (original name was: gnl|Prokka|FFKEFMOG_80); c00081_gnlPro.. (original name was: gnl|Prokka|FFKEFMOG_81); c00082_gnlPro.. (original name was: gnl|Prokka|FFKEFMOG_82); c00083_gnlPro.. (original name was: gnl|Prokka|FFKEFMOG_83); c00084_gnlPro.. (original name was: gnl|Prokka|FFKEFMOG_84); c00085_gnlPro.. (original name was: gnl|Prokka|FFKEFMOG_85); c00086_gnlPro.. (original name was: gnl|Prokka|FFKEFMOG_86); c00087_gnlPro.. (original name was: gnl|Prokka|FFKEFMOG_87); c00088_gnlPro.. (original name was: gnl|Prokka|FFKEFMOG_88); c00089_gnlPro.. (original name was: gnl|Prokka|FFKEFMOG_89); c00090_gnlPro.. (original name was: gnl|Prokka|FFKEFMOG_90); c00091_gnlPro.. (original name was: gnl|Prokka|FFKEFMOG_91); c00092_gnlPro.. (original name was: gnl|Prokka|FFKEFMOG_92); c00093_gnlPro.. (original name was: gnl|Prokka|FFKEFMOG_93); c00094_gnlPro.. (original name was: gnl|Prokka|FFKEFMOG_94); c00095_gnlPro.. (original name was: gnl|Prokka|FFKEFMOG_95); c00096_gnlPro.. (original name was: gnl|Prokka|FFKEFMOG_96); c00097_gnlPro.. (original name was: gnl|Prokka|FFKEFMOG_97); c00098_gnlPro.. (original name was: gnl|Prokka|FFKEFMOG_98); c00099_gnlPro.. (original name was: gnl|Prokka|FFKEFMOG_99); c00100_gnlPro.. (original name was: gnl|Prokka|FFKEFMOG_100); c00101_gnlPro.. (original name was: gnl|Prokka|FFKEFMOG_101); c00102_gnlPro.. (original name was: gnl|Prokka|FFKEFMOG_102); c00103_gnlPro.. (original name was: gnl|Prokka|FFKEFMOG_103); c00104_gnlPro.. (original name was: gnl|Prokka|FFKEFMOG_104); c00105_gnlPro.. (original name was: gnl|Prokka|FFKEFMOG_105); c00106_gnlPro.. (original name was: gnl|Prokka|FFKEFMOG_106); c00107_gnlPro.. (original name was: gnl|Prokka|FFKEFMOG_107); c00108_gnlPro.. (original name was: gnl|Prokka|FFKEFMOG_108); c00109_gnlPro.. (original name was: gnl|Prokka|FFKEFMOG_109); c00110_gnlPro.. (original name was: gnl|Prokka|FFKEFMOG_110); c00111_gnlPro.. (original name was: gnl|Prokka|FFKEFMOG_111); c00112_gnlPro.. (original name was: gnl|Prokka|FFKEFMOG_112); c00113_gnlPro.. (original name was: gnl|Prokka|FFKEFMOG_113); c00114_gnlPro.. (original name was: gnl|Prokka|FFKEFMOG_114); c00115_gnlPro.. (original name was: gnl|Prokka|FFKEFMOG_115); c00116_gnlPro.. (original name was: gnl|Prokka|FFKEFMOG_116)

Compact view

c00002_gnlPro.. - Region 1 - Pyruvate2acetate-formate

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Location: 6,581 - 29,630 nt. (total: 23,050 nt) Show pHMM detection rules used

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

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core biosynthetic genes

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transport-related genes

regulatory genes

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c00009_gnlPro.. - Region 1 - porA

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Location: 1 - 21,914 nt. (total: 21,914 nt) Show pHMM detection rules used

Region on contig edge.

porA: (Fer4_7 and TPP_enzyme_C and POR and POR_N and PFOR_II and not (EKR or Fer4_16))

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core biosynthetic genes

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transport-related genes

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resistance genes

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c00010_gnlPro.. - Region 1 - NADH_dehydrogenase_I

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Location: 28,051 - 58,045 nt. (total: 29,995 nt) Show pHMM detection rules used

NADH_dehydrogenase_I: (Oxidored_q4 and Oxidored_q6 and Complex1_30kDa and Complex1_49kDa and NADHdh and Oxidored_q3 and Oxidored_q2 and minimum(4, [Fe-2S_thioredx, Fer2_4, Fer4_7, Molybdop_Fe4S4, Molydop_binding, NADH-G_4Fe-4S_3, NADH_4Fe-4S, Proton_antipo_M, Proton_antipo_N, SLBB]))

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core biosynthetic genes

additional biosynthetic genes

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regulatory genes

resistance genes

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c00012_gnlPro.. - Region 1 - succinate2propionate

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Location: 51,367 - 69,573 nt. (total: 18,207 nt) Show pHMM detection rules used

Region on contig edge.

succinate2propionate: (minimum(4, [AcetylCoA_hyd_C, AcetylCoA_hydro, B12-binding, Biotin_lipoyl, Glyoxalase_4, HMGL-like, MM_CoA_mutase, MeaB, OAD_beta, OAD_gamma, PYC_OADA]) and minimum(1, [CT_Btheta, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, CT_Vparvula]) and not Cytidylate_kin)

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core biosynthetic genes

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regulatory genes

resistance genes

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electron transport genes

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c00014_gnlPro.. - Region 1 - Rnf_complex

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Location: 17,811 - 43,138 nt. (total: 25,328 nt) Show pHMM detection rules used

Rnf_complex: (Complex1_51K and minimum(5, [FMN_bind, FeS, Fer4, Fer4_9, NQR2_RnfD_RnfE, Rnf-Nqr, RnfC_N, SLBB]))

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

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c00017_gnlPro.. - Region 1 - Fumarate2succinate

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Location: 20,103 - 43,524 nt. (total: 23,422 nt) Show pHMM detection rules used

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

Legend:

core biosynthetic genes

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transport-related genes

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resistance genes

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c00027_gnlPro.. - Region 1 - TPP_AA_metabolism

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Location: 1 - 20,912 nt. (total: 20,912 nt) Show pHMM detection rules used

Region on contig edge.

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

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core biosynthetic genes

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regulatory genes

resistance genes

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No matches found.

c00040_gnlPro.. - Region 1 - Putrescine2spermidine

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Location: 14,368 - 26,144 nt. (total: 11,777 nt) Show pHMM detection rules used

Region on contig edge.

Putrescine2spermidine: (minimum(2, [AdoMet_dc, Spermine_synt_N, Spermine_synth]) or (Orn_DAP_Arg_deC and Sacchrp_dh_C))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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Gene details

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