Select genomic region:
Overview
19.1
21.1
23.1
31.1

### Identified secondary metabolite regions using strictness 'relaxed'

gnlProkkaHNGFANGH_19 (original name was: gnl|Prokka|HNGFANGH_19)

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 19.1 | NRPS | 23,037 | 62,195 | dipeptide aldehydes | NRP | 47%

gnlProkkaHNGFANGH_21 (original name was: gnl|Prokka|HNGFANGH_21)

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 21.1 | ranthipeptide | 38,685 | 60,273 |

gnlProkkaHNGFANGH_23 (original name was: gnl|Prokka|HNGFANGH_23)

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 23.1 | lanthipeptide-class-ii | 36,198 | 58,828 |

gnlProkkaHNGFANGH_31 (original name was: gnl|Prokka|HNGFANGH_31)

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 31.1 | cyclic-lactone-autoinducer | 22,744 | 38,169 |

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 19.1 | NRPS | 23,037 | 62,195 | dipeptide aldehydes | NRP | 47%
Region 21.1 | ranthipeptide | 38,685 | 60,273 |
Region 23.1 | lanthipeptide-class-ii | 36,198 | 58,828 |
Region 31.1 | cyclic-lactone-autoinducer | 22,744 | 38,169 |

No secondary metabolite regions were found in these records:
  gnlProkkaHNGFANGH_1 (original name was: gnl|Prokka|HNGFANGH_1)
  gnlProkkaHNGFANGH_2 (original name was: gnl|Prokka|HNGFANGH_2)
  gnlProkkaHNGFANGH_3 (original name was: gnl|Prokka|HNGFANGH_3)
  gnlProkkaHNGFANGH_4 (original name was: gnl|Prokka|HNGFANGH_4)
  gnlProkkaHNGFANGH_5 (original name was: gnl|Prokka|HNGFANGH_5)
  gnlProkkaHNGFANGH_6 (original name was: gnl|Prokka|HNGFANGH_6)
  gnlProkkaHNGFANGH_7 (original name was: gnl|Prokka|HNGFANGH_7)
  gnlProkkaHNGFANGH_8 (original name was: gnl|Prokka|HNGFANGH_8)
  gnlProkkaHNGFANGH_9 (original name was: gnl|Prokka|HNGFANGH_9)
  gnlProkkaHNGFANGH_10 (original name was: gnl|Prokka|HNGFANGH_10)
  gnlProkkaHNGFANGH_11 (original name was: gnl|Prokka|HNGFANGH_11)
  gnlProkkaHNGFANGH_12 (original name was: gnl|Prokka|HNGFANGH_12)
  gnlProkkaHNGFANGH_13 (original name was: gnl|Prokka|HNGFANGH_13)
  gnlProkkaHNGFANGH_14 (original name was: gnl|Prokka|HNGFANGH_14)
  gnlProkkaHNGFANGH_15 (original name was: gnl|Prokka|HNGFANGH_15)
  gnlProkkaHNGFANGH_16 (original name was: gnl|Prokka|HNGFANGH_16)
  gnlProkkaHNGFANGH_17 (original name was: gnl|Prokka|HNGFANGH_17)
  gnlProkkaHNGFANGH_18 (original name was: gnl|Prokka|HNGFANGH_18)
  gnlProkkaHNGFANGH_20 (original name was: gnl|Prokka|HNGFANGH_20)
  gnlProkkaHNGFANGH_22 (original name was: gnl|Prokka|HNGFANGH_22)
  gnlProkkaHNGFANGH_24 (original name was: gnl|Prokka|HNGFANGH_24)
  gnlProkkaHNGFANGH_25 (original name was: gnl|Prokka|HNGFANGH_25)
  gnlProkkaHNGFANGH_26 (original name was: gnl|Prokka|HNGFANGH_26)
  gnlProkkaHNGFANGH_27 (original name was: gnl|Prokka|HNGFANGH_27)
  gnlProkkaHNGFANGH_28 (original name was: gnl|Prokka|HNGFANGH_28)
  gnlProkkaHNGFANGH_29 (original name was: gnl|Prokka|HNGFANGH_29)
  gnlProkkaHNGFANGH_30 (original name was: gnl|Prokka|HNGFANGH_30)
  gnlProkkaHNGFANGH_32 (original name was: gnl|Prokka|HNGFANGH_32)
  gnlProkkaHNGFANGH_33 (original name was: gnl|Prokka|HNGFANGH_33)
  gnlProkkaHNGFANGH_34 (original name was: gnl|Prokka|HNGFANGH_34)
  gnlProkkaHNGFANGH_35 (original name was: gnl|Prokka|HNGFANGH_35)
  gnlProkkaHNGFANGH_36 (original name was: gnl|Prokka|HNGFANGH_36)
  gnlProkkaHNGFANGH_37 (original name was: gnl|Prokka|HNGFANGH_37)
  gnlProkkaHNGFANGH_38 (original name was: gnl|Prokka|HNGFANGH_38)
  gnlProkkaHNGFANGH_39 (original name was: gnl|Prokka|HNGFANGH_39)
  gnlProkkaHNGFANGH_40 (original name was: gnl|Prokka|HNGFANGH_40)
  gnlProkkaHNGFANGH_41 (original name was: gnl|Prokka|HNGFANGH_41)
  gnlProkkaHNGFANGH_42 (original name was: gnl|Prokka|HNGFANGH_42)
  gnlProkkaHNGFANGH_43 (original name was: gnl|Prokka|HNGFANGH_43)
  gnlProkkaHNGFANGH_44 (original name was: gnl|Prokka|HNGFANGH_44)
  gnlProkkaHNGFANGH_45 (original name was: gnl|Prokka|HNGFANGH_45)
  gnlProkkaHNGFANGH_46 (original name was: gnl|Prokka|HNGFANGH_46)
  gnlProkkaHNGFANGH_47 (original name was: gnl|Prokka|HNGFANGH_47)
  gnlProkkaHNGFANGH_48 (original name was: gnl|Prokka|HNGFANGH_48)
  gnlProkkaHNGFANGH_49 (original name was: gnl|Prokka|HNGFANGH_49)
  gnlProkkaHNGFANGH_50 (original name was: gnl|Prokka|HNGFANGH_50)
  gnlProkkaHNGFANGH_51 (original name was: gnl|Prokka|HNGFANGH_51)
  gnlProkkaHNGFANGH_52 (original name was: gnl|Prokka|HNGFANGH_52)
  gnlProkkaHNGFANGH_53 (original name was: gnl|Prokka|HNGFANGH_53)
  gnlProkkaHNGFANGH_54 (original name was: gnl|Prokka|HNGFANGH_54)
  gnlProkkaHNGFANGH_55 (original name was: gnl|Prokka|HNGFANGH_55)
  gnlProkkaHNGFANGH_56 (original name was: gnl|Prokka|HNGFANGH_56)
  gnlProkkaHNGFANGH_57 (original name was: gnl|Prokka|HNGFANGH_57)
  gnlProkkaHNGFANGH_58 (original name was: gnl|Prokka|HNGFANGH_58)
  gnlProkkaHNGFANGH_59 (original name was: gnl|Prokka|HNGFANGH_59)
  gnlProkkaHNGFANGH_60 (original name was: gnl|Prokka|HNGFANGH_60)
  gnlProkkaHNGFANGH_61 (original name was: gnl|Prokka|HNGFANGH_61)
  gnlProkkaHNGFANGH_62 (original name was: gnl|Prokka|HNGFANGH_62)
  gnlProkkaHNGFANGH_63 (original name was: gnl|Prokka|HNGFANGH_63)
  gnlProkkaHNGFANGH_64 (original name was: gnl|Prokka|HNGFANGH_64)
  gnlProkkaHNGFANGH_65 (original name was: gnl|Prokka|HNGFANGH_65)
  gnlProkkaHNGFANGH_66 (original name was: gnl|Prokka|HNGFANGH_66)
  gnlProkkaHNGFANGH_67 (original name was: gnl|Prokka|HNGFANGH_67)
  gnlProkkaHNGFANGH_68 (original name was: gnl|Prokka|HNGFANGH_68)
  gnlProkkaHNGFANGH_69 (original name was: gnl|Prokka|HNGFANGH_69)
  gnlProkkaHNGFANGH_70 (original name was: gnl|Prokka|HNGFANGH_70)
  gnlProkkaHNGFANGH_71 (original name was: gnl|Prokka|HNGFANGH_71)
  gnlProkkaHNGFANGH_72 (original name was: gnl|Prokka|HNGFANGH_72)
  gnlProkkaHNGFANGH_73 (original name was: gnl|Prokka|HNGFANGH_73)
  gnlProkkaHNGFANGH_74 (original name was: gnl|Prokka|HNGFANGH_74)
  gnlProkkaHNGFANGH_75 (original name was: gnl|Prokka|HNGFANGH_75)
  gnlProkkaHNGFANGH_76 (original name was: gnl|Prokka|HNGFANGH_76)
  gnlProkkaHNGFANGH_77 (original name was: gnl|Prokka|HNGFANGH_77)
  gnlProkkaHNGFANGH_78 (original name was: gnl|Prokka|HNGFANGH_78)
  gnlProkkaHNGFANGH_79 (original name was: gnl|Prokka|HNGFANGH_79)
  gnlProkkaHNGFANGH_80 (original name was: gnl|Prokka|HNGFANGH_80)
  gnlProkkaHNGFANGH_81 (original name was: gnl|Prokka|HNGFANGH_81)
  gnlProkkaHNGFANGH_82 (original name was: gnl|Prokka|HNGFANGH_82)
  gnlProkkaHNGFANGH_83 (original name was: gnl|Prokka|HNGFANGH_83)
  gnlProkkaHNGFANGH_84 (original name was: gnl|Prokka|HNGFANGH_84)
  gnlProkkaHNGFANGH_85 (original name was: gnl|Prokka|HNGFANGH_85)
  gnlProkkaHNGFANGH_86 (original name was: gnl|Prokka|HNGFANGH_86)
  gnlProkkaHNGFANGH_87 (original name was: gnl|Prokka|HNGFANGH_87)

Compact view
gnlProkkaHNGFANGH_19 - Region 1 - NRPS
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 23,037 - 62,195 nt. (total: 39,159 nt) Show pHMM detection rules used
Region on contig edge.
NRPS: cds(Condensation and (AMP-binding or A-OX))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
Gene overview
NRPS/PKS domains
KnownClusterBlast
NRPS/PKS modules
Gene/CDS overview
A brief tabular summary of genes/CDS features within the region.
Filtering the table will also search biosynthetic profiles and gene function data. If enabled, the overview will then zoom to show the area covered by the filtered selection.
Genes selected in the region drawing above will be marked in the table with an indicator to the left of the gene name.
Filter:
Automatically zoom to filtered/selected features

Identifier | Product | Length | Function | Sequence | NCBI Blast | Filter details
--- | --- | --- | --- | --- | --- | ---
|  | NT | AA |  | NT | AA |  |

No genes match the given filter
Detailed domain annotation
Shows NRPS- and PKS-related domains for each feature that contains them. Click on each domain for more information about the domain's location, consensus monomer prediction, and other details.
A domain glossary is available here, and an explanation of the visualisation is available here.
Selected features only
Show module domains
Similar known gene clusters from MIBiG 3.1
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.
Module view
Shows module structures for each candidate cluster in NRPS and PKS regions.
Genes are shown in predicted order, and are only present when containing at least one complete module.
A domain glossary is available here, and an explanation of the visualisation is available here.
Legend
NRPS/PKS products
NRPS/PKS substrates
Predicted core structure(s)
Shows estimated product structure and polymer for each candidate cluster in the region. To show the product, click on the expander or the candidate cluster feature drawn in the overview.
For candidate cluster 1, location 23036 - 62195:
Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:
  (X - X - X)

Direct lookup in NORINE database: strict or relaxed
Link to NORINE database query form
NRPS/PKS substrate predictions
Shows the predicted substrates for each adenylation domain and acyltransferase within genes. Each gene prediction can be expanded to view detailed predictions of each domain. Each prediction can be expanded to view the predictions by tool (and, for some tools, further expanded for extra details).

ctg19_46: X - X - X
  AMP-binding (22..421): X
  nrpys: Leu, Trp
  SVM prediction details:
    Predicted physicochemical class:
      N/A
    Large clusters prediction:
      Apolar, aliphatic (Gly, Ala, Val, Leu, Ile, Abu, Ival)
    Small clusters prediction:
      Tiny, hydrophilic, transition to aliphatic (Gly, Ala)
    Single AA prediction:
      N/A
  Stachelhaus prediction details:
    Stachelhaus sequence:
      DVLTDGGISK
    Nearest Stachelhaus code(s):
      Leu or Trp DVLTDGGISK (100% 8Å match)
    Stachelhaus code match:
      100% (strong)
  AMP-binding (1035..1423): X
  nrpys: Leu, Trp
  SVM prediction details:
    Predicted physicochemical class:
      hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
    Large clusters prediction:
      Apolar, aliphatic (Gly, Ala, Val, Leu, Ile, Abu, Ival)
    Small clusters prediction:
      Aliphatic, branched hydrophobic (Val, Leu, Ile, Abu, Ival)
    Single AA prediction:
      N/A
  Stachelhaus prediction details:
    Stachelhaus sequence:
      DAMFSGAIFK
    Nearest Stachelhaus code(s):
      Leu or Trp DAMFSGAIFK (100% 8Å match)
    Stachelhaus code match:
      100% (strong)
  AMP-binding (2029..2420): X
  nrpys: Leu, Trp
  SVM prediction details:
    Predicted physicochemical class:
      N/A
    Large clusters prediction:
      Aromatic side chain (Phe, Trp, Ph-Gly, Tyr, bOH-Tyr)
    Small clusters prediction:
      N/A
    Single AA prediction:
      N/A
  Stachelhaus prediction details:
    Stachelhaus sequence:
      DAITTGGVSK
    Nearest Stachelhaus code(s):
      Leu or Trp DAITTGGVSK (100% 8Å match)
    Stachelhaus code match:
      100% (strong)

gnlProkkaHNGFANGH_21 - Region 1 - ranthipeptide
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 38,685 - 60,273 nt. (total: 21,589 nt) Show pHMM detection rules used
Region on contig edge.
ranthipeptide: (TIGR03973 or SCIFF or (cds(PF04055 and (TIGR04085 or SPASM)) and minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE]) and not (TIGR01716 or subtilosin or TIGR02111 or TIGR03966 or TIGR04103 or (YcaO or TIGR03604))))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
Gene overview
KnownClusterBlast
Gene/CDS overview
A brief tabular summary of genes/CDS features within the region.
Filtering the table will also search biosynthetic profiles and gene function data. If enabled, the overview will then zoom to show the area covered by the filtered selection.
Genes selected in the region drawing above will be marked in the table with an indicator to the left of the gene name.
Filter:
Automatically zoom to filtered/selected features

Identifier | Product | Length | Function | Sequence | NCBI Blast | Filter details
--- | --- | --- | --- | --- | --- | ---
|  | NT | AA |  | NT | AA |  |

No genes match the given filter
Similar known gene clusters from MIBiG 3.1
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

gnlProkkaHNGFANGH_23 - Region 1 - lanthipeptide-class-ii
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 36,198 - 58,828 nt. (total: 22,631 nt) Show pHMM detection rules used
Region on contig edge.
lanthipeptide-class-ii: cds(LANC_like and DUF4135)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
Gene overview
KnownClusterBlast
Lanthipeptides
Gene/CDS overview
A brief tabular summary of genes/CDS features within the region.
Filtering the table will also search biosynthetic profiles and gene function data. If enabled, the overview will then zoom to show the area covered by the filtered selection.
Genes selected in the region drawing above will be marked in the table with an indicator to the left of the gene name.
Filter:
Automatically zoom to filtered/selected features

Identifier | Product | Length | Function | Sequence | NCBI Blast | Filter details
--- | --- | --- | --- | --- | --- | ---
|  | NT | AA |  | NT | AA |  |

No genes match the given filter
Similar known gene clusters from MIBiG 3.1
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

Lanthipeptide predictions
Shows the possible core peptides for each biosynthetic enzyme.
Includes CompaRiPPson results for any available databases, with a detailed explanation here.

#### Lanthipeptide(s) for ctg23_55

allorf_45044_45115
Leader:
MNICNYRIKRILMGMSVFA
Core:
C I S D
Core with dehydrations:
Cys I Dha D
allorf_57186_57371
Leader:
MSLNFSTYAYITKSPVRYSDAAVFSA
Core:
A A P D Y H H P E L F P V L L L F H T R E L Y P H M T E V T C F Q T L
Core with dehydrations:
A A P D Y H H P E L F P V L L L F H Dhb R E L Y P H M Dhb E V Dhb Cys F Q Dhb L

#### antiSMASH-DB 4.0 matches for allorf_57186_57371

14.3% NZ_CP058552.1: Lanthipeptides: allorf_1481579_1481740_lanthipeptide
23
Y P H M T E V T C F Q T L
35
Y H+ + C Q T+
6
Y K H V Q K T N C V Q T I
18

#### Legend:

Dha: Didehydroalanine
Dhb: Didehydrobutyrine
Lanthipeptides
Core peptide predictions
Lists the possible core peptides in the region. Each core peptide lists the number of lanthionine bridges, possible molecular weights, and the scores for cleavage site prediction and RODEO.

allorf_45044_45115 - Class II
  Cleavage pHMM score: -6.80
  RODEO score: 0
  Monoisotopic mass: 418.2 Da
  Molecular weight: 418.5 Da
  Number of bridges: 1
allorf_57186_57371 - Class II
  Cleavage pHMM score: -6.80
  RODEO score: 0
  Monoisotopic mass: 4093.1 Da
  Molecular weight: 4095.7 Da
  Number of bridges: 1
  Alternative weights
    (assuming N unmodified Ser/Thr residues)
    4113.7 Da N = 1
    4131.7 Da N = 2
    4149.7 Da N = 3

gnlProkkaHNGFANGH_31 - Region 1 - cyclic-lactone-autoinducer
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 22,744 - 38,169 nt. (total: 15,426 nt) Show pHMM detection rules used
Region on contig edge.
cyclic-lactone-autoinducer: (TIGR04223 or AgrB)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
Gene overview
KnownClusterBlast
Gene/CDS overview
A brief tabular summary of genes/CDS features within the region.
Filtering the table will also search biosynthetic profiles and gene function data. If enabled, the overview will then zoom to show the area covered by the filtered selection.
Genes selected in the region drawing above will be marked in the table with an indicator to the left of the gene name.
Filter:
Automatically zoom to filtered/selected features

Identifier | Product | Length | Function | Sequence | NCBI Blast | Filter details
--- | --- | --- | --- | --- | --- | ---
|  | NT | AA |  | NT | AA |  |

No genes match the given filter
Similar known gene clusters from MIBiG 3.1
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.