GCA_938001875.1 - 6 region(s)

Identified primary metabolite regions

c00004_gnlPro.. (original name was: gnl|Prokka|LOHLDMBB_4)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 4.1	pdu	SCFA-other	1	34,404	Propanediol degradation S. enterica	PDU	54%

c00022_gnlPro.. (original name was: gnl|Prokka|LOHLDMBB_22)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 22.1	OD_AA_metabolism	Putative	1	18,111	PFOR II pathway B. thetaiotaomicron	PFORII	100%

c00031_gnlPro.. (original name was: gnl|Prokka|LOHLDMBB_31)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 31.1	Rnf_complex	E-MGC	1	17,513	Rnf complex C. sporogenes	RNF	100%

c00036_gnlPro.. (original name was: gnl|Prokka|LOHLDMBB_36)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 36.1	succinate2propionate	SCFA	1	21,707	Succinate to propionate B. theta	PRO	25%

c00047_gnlPro.. (original name was: gnl|Prokka|LOHLDMBB_47)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 47.1	Others_HGD_unassigned	Putative	77,957	102,195

c00082_gnlPro.. (original name was: gnl|Prokka|LOHLDMBB_82)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 82.1	Pyruvate2acetate-formate	SCFA	13,557	27,421	Pyruvate to acetate-formate E. coli	PFL_acetate	100%

No primary metabolite regions were found in these records:: c00001_gnlPro.. (original name was: gnl|Prokka|LOHLDMBB_1); c00002_gnlPro.. (original name was: gnl|Prokka|LOHLDMBB_2); c00003_gnlPro.. (original name was: gnl|Prokka|LOHLDMBB_3); c00005_gnlPro.. (original name was: gnl|Prokka|LOHLDMBB_5); c00006_gnlPro.. (original name was: gnl|Prokka|LOHLDMBB_6); c00007_gnlPro.. (original name was: gnl|Prokka|LOHLDMBB_7); c00008_gnlPro.. (original name was: gnl|Prokka|LOHLDMBB_8); c00009_gnlPro.. (original name was: gnl|Prokka|LOHLDMBB_9); c00010_gnlPro.. (original name was: gnl|Prokka|LOHLDMBB_10); c00011_gnlPro.. (original name was: gnl|Prokka|LOHLDMBB_11); c00012_gnlPro.. (original name was: gnl|Prokka|LOHLDMBB_12); c00013_gnlPro.. (original name was: gnl|Prokka|LOHLDMBB_13); c00014_gnlPro.. (original name was: gnl|Prokka|LOHLDMBB_14); c00015_gnlPro.. (original name was: gnl|Prokka|LOHLDMBB_15); c00016_gnlPro.. (original name was: gnl|Prokka|LOHLDMBB_16); c00017_gnlPro.. (original name was: gnl|Prokka|LOHLDMBB_17); c00018_gnlPro.. (original name was: gnl|Prokka|LOHLDMBB_18); c00019_gnlPro.. (original name was: gnl|Prokka|LOHLDMBB_19); c00020_gnlPro.. (original name was: gnl|Prokka|LOHLDMBB_20); c00021_gnlPro.. (original name was: gnl|Prokka|LOHLDMBB_21); c00023_gnlPro.. (original name was: gnl|Prokka|LOHLDMBB_23); c00024_gnlPro.. (original name was: gnl|Prokka|LOHLDMBB_24); c00025_gnlPro.. (original name was: gnl|Prokka|LOHLDMBB_25); c00026_gnlPro.. (original name was: gnl|Prokka|LOHLDMBB_26); c00027_gnlPro.. (original name was: gnl|Prokka|LOHLDMBB_27); c00028_gnlPro.. (original name was: gnl|Prokka|LOHLDMBB_28); c00029_gnlPro.. (original name was: gnl|Prokka|LOHLDMBB_29); c00030_gnlPro.. (original name was: gnl|Prokka|LOHLDMBB_30); c00032_gnlPro.. (original name was: gnl|Prokka|LOHLDMBB_32); c00033_gnlPro.. (original name was: gnl|Prokka|LOHLDMBB_33); c00034_gnlPro.. (original name was: gnl|Prokka|LOHLDMBB_34); c00035_gnlPro.. (original name was: gnl|Prokka|LOHLDMBB_35); c00037_gnlPro.. (original name was: gnl|Prokka|LOHLDMBB_37); c00038_gnlPro.. (original name was: gnl|Prokka|LOHLDMBB_38); c00039_gnlPro.. (original name was: gnl|Prokka|LOHLDMBB_39); c00040_gnlPro.. (original name was: gnl|Prokka|LOHLDMBB_40); c00041_gnlPro.. (original name was: gnl|Prokka|LOHLDMBB_41); c00042_gnlPro.. (original name was: gnl|Prokka|LOHLDMBB_42); c00043_gnlPro.. (original name was: gnl|Prokka|LOHLDMBB_43); c00044_gnlPro.. (original name was: gnl|Prokka|LOHLDMBB_44); c00045_gnlPro.. (original name was: gnl|Prokka|LOHLDMBB_45); c00046_gnlPro.. (original name was: gnl|Prokka|LOHLDMBB_46); c00048_gnlPro.. (original name was: gnl|Prokka|LOHLDMBB_48); c00049_gnlPro.. (original name was: gnl|Prokka|LOHLDMBB_49); c00050_gnlPro.. (original name was: gnl|Prokka|LOHLDMBB_50); c00051_gnlPro.. (original name was: gnl|Prokka|LOHLDMBB_51); c00052_gnlPro.. (original name was: gnl|Prokka|LOHLDMBB_52); c00053_gnlPro.. (original name was: gnl|Prokka|LOHLDMBB_53); c00054_gnlPro.. (original name was: gnl|Prokka|LOHLDMBB_54); c00055_gnlPro.. (original name was: gnl|Prokka|LOHLDMBB_55); c00056_gnlPro.. (original name was: gnl|Prokka|LOHLDMBB_56); c00057_gnlPro.. (original name was: gnl|Prokka|LOHLDMBB_57); c00058_gnlPro.. (original name was: gnl|Prokka|LOHLDMBB_58); c00059_gnlPro.. (original name was: gnl|Prokka|LOHLDMBB_59); c00060_gnlPro.. (original name was: gnl|Prokka|LOHLDMBB_60); c00061_gnlPro.. (original name was: gnl|Prokka|LOHLDMBB_61); c00062_gnlPro.. (original name was: gnl|Prokka|LOHLDMBB_62); c00063_gnlPro.. (original name was: gnl|Prokka|LOHLDMBB_63); c00064_gnlPro.. (original name was: gnl|Prokka|LOHLDMBB_64); c00065_gnlPro.. (original name was: gnl|Prokka|LOHLDMBB_65); c00066_gnlPro.. (original name was: gnl|Prokka|LOHLDMBB_66); c00067_gnlPro.. (original name was: gnl|Prokka|LOHLDMBB_67); c00068_gnlPro.. (original name was: gnl|Prokka|LOHLDMBB_68); c00069_gnlPro.. (original name was: gnl|Prokka|LOHLDMBB_69); c00070_gnlPro.. (original name was: gnl|Prokka|LOHLDMBB_70); c00071_gnlPro.. (original name was: gnl|Prokka|LOHLDMBB_71); c00072_gnlPro.. (original name was: gnl|Prokka|LOHLDMBB_72); c00073_gnlPro.. (original name was: gnl|Prokka|LOHLDMBB_73); c00074_gnlPro.. (original name was: gnl|Prokka|LOHLDMBB_74); c00075_gnlPro.. (original name was: gnl|Prokka|LOHLDMBB_75); c00076_gnlPro.. (original name was: gnl|Prokka|LOHLDMBB_76); c00077_gnlPro.. (original name was: gnl|Prokka|LOHLDMBB_77); c00078_gnlPro.. (original name was: gnl|Prokka|LOHLDMBB_78); c00079_gnlPro.. (original name was: gnl|Prokka|LOHLDMBB_79); c00080_gnlPro.. (original name was: gnl|Prokka|LOHLDMBB_80); c00081_gnlPro.. (original name was: gnl|Prokka|LOHLDMBB_81); c00083_gnlPro.. (original name was: gnl|Prokka|LOHLDMBB_83); c00084_gnlPro.. (original name was: gnl|Prokka|LOHLDMBB_84); c00085_gnlPro.. (original name was: gnl|Prokka|LOHLDMBB_85); c00086_gnlPro.. (original name was: gnl|Prokka|LOHLDMBB_86); c00087_gnlPro.. (original name was: gnl|Prokka|LOHLDMBB_87); c00088_gnlPro.. (original name was: gnl|Prokka|LOHLDMBB_88); c00089_gnlPro.. (original name was: gnl|Prokka|LOHLDMBB_89); c00090_gnlPro.. (original name was: gnl|Prokka|LOHLDMBB_90); c00091_gnlPro.. (original name was: gnl|Prokka|LOHLDMBB_91); c00092_gnlPro.. (original name was: gnl|Prokka|LOHLDMBB_92); c00093_gnlPro.. (original name was: gnl|Prokka|LOHLDMBB_93); c00094_gnlPro.. (original name was: gnl|Prokka|LOHLDMBB_94); c00095_gnlPro.. (original name was: gnl|Prokka|LOHLDMBB_95); c00096_gnlPro.. (original name was: gnl|Prokka|LOHLDMBB_96); c00097_gnlPro.. (original name was: gnl|Prokka|LOHLDMBB_97); c00098_gnlPro.. (original name was: gnl|Prokka|LOHLDMBB_98); c00099_gnlPro.. (original name was: gnl|Prokka|LOHLDMBB_99); c00100_gnlPro.. (original name was: gnl|Prokka|LOHLDMBB_100); c00101_gnlPro.. (original name was: gnl|Prokka|LOHLDMBB_101); c00102_gnlPro.. (original name was: gnl|Prokka|LOHLDMBB_102); c00103_gnlPro.. (original name was: gnl|Prokka|LOHLDMBB_103); c00104_gnlPro.. (original name was: gnl|Prokka|LOHLDMBB_104); c00105_gnlPro.. (original name was: gnl|Prokka|LOHLDMBB_105); c00106_gnlPro.. (original name was: gnl|Prokka|LOHLDMBB_106); c00107_gnlPro.. (original name was: gnl|Prokka|LOHLDMBB_107); c00108_gnlPro.. (original name was: gnl|Prokka|LOHLDMBB_108); c00109_gnlPro.. (original name was: gnl|Prokka|LOHLDMBB_109); c00110_gnlPro.. (original name was: gnl|Prokka|LOHLDMBB_110)

Compact view

c00004_gnlPro.. - Region 1 - pdu

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Location: 1 - 34,404 nt. (total: 34,404 nt) Show pHMM detection rules used

Region on contig edge.

pdu: (minimum(2, [Aldedh, BMC, Cob_adeno_trans, EutN_CcmL, Fe-ADH, Fe-ADH_2, PDU_like, PTAC, PduV-EutP]) and Dehydratase_MU and Dehydratase_SU and Dehydratase_LU)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

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c00022_gnlPro.. - Region 1 - OD_AA_metabolism

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Location: 1 - 18,111 nt. (total: 18,111 nt) Show pHMM detection rules used

Region on contig edge.

OD_AA_metabolism: (minimum(1, [PFOR_II, POR, POR_N]) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (Gly_radical_scatole or Gly_radical or Gly_430_pcre or Gly_8-9_TMA))

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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KnownClusterBlast

Similar known gene clusters

c00031_gnlPro.. - Region 1 - Rnf_complex

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Location: 1 - 17,513 nt. (total: 17,513 nt) Show pHMM detection rules used

Region on contig edge.

Rnf_complex: (Complex1_51K and minimum(5, [FMN_bind, FeS, Fer4, Fer4_9, NQR2_RnfD_RnfE, Rnf-Nqr, RnfC_N, SLBB]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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c00036_gnlPro.. - Region 1 - succinate2propionate

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Location: 1 - 21,707 nt. (total: 21,707 nt) Show pHMM detection rules used

Region on contig edge.

succinate2propionate: (minimum(4, [AcetylCoA_hyd_C, AcetylCoA_hydro, B12-binding, Biotin_lipoyl, Glyoxalase_4, HMGL-like, MM_CoA_mutase, MeaB, OAD_beta, OAD_gamma, PYC_OADA]) and minimum(1, [CT_Btheta, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, CT_Vparvula]) and not Cytidylate_kin)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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KnownClusterBlast

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c00047_gnlPro.. - Region 1 - Others_HGD_unassigned

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Location: 77,957 - 102,195 nt. (total: 24,239 nt) Show pHMM detection rules used

Others_HGD_unassigned: (minimum(1, [HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Lactoyl-CoA1, Lactoyl-CoA2]) and minimum(1, [ACP_syn_III, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AdoHcyase_NAD, AlaDh_PNT_C, BcrAD_BadFG, Biotin_lipoyl, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_6_Glutaconate, CoA_transf_3, ECH_1, ECH_2, ETF, ETF_alpha, FGGY_C, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, Mal_decarbox_Al, Peptidase_M22, Peptidase_M23, Thiolase_C, Thiolase_N, ketoacyl-synt]) and not (minimum(2, [AcetylCoA_hyd_C, BcrAD_BadFG, CoA_trans, CoA_trans_230_acto, Mal_decarbox_Al]) and Lactoyl-CoA2 and Lactoyl-CoA1) and not (minimum(4, [ACP_syn_III, ACP_syn_III_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AlaDh_PNT_C, BcrAD_BadFG, ECH_1, ECH_2, ETF, ETF_alpha, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, IlvN, NAD_Gly3P_dh_N, Thiolase_C, Thiolase_N, ketoacyl-synt]) and HAAA1 and not HleuS1))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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No matches found.

c00082_gnlPro.. - Region 1 - Pyruvate2acetate-formate

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Location: 13,557 - 27,421 nt. (total: 13,865 nt) Show pHMM detection rules used

Region on contig edge.

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

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electron transport genes

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Gene details

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