GCA_947038805.1 - 5 region(s)

Identified primary metabolite regions

c00003_gnlPro.. (original name was: gnl|Prokka|OLCMCLDA_3)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 3.1	PFOR_II_pathway	SCFA	40,642	64,220	PFOR II pathway B. thetaiotaomicron	PFORII	100%

c00008_gnlPro.. (original name was: gnl|Prokka|OLCMCLDA_8)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 8.1	Fumarate2succinate	SCFA	16,661	40,150	Fumarate to succinate B. thetaiotaomicron	SUC	66%

c00015_gnlPro.. (original name was: gnl|Prokka|OLCMCLDA_15)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 15.1	TPP_fatty_acids,succinate2propionate	SCFA	24,374	60,025	Succinate to propionate A. sp. KLE1797	SUC	100%

c00020_gnlPro.. (original name was: gnl|Prokka|OLCMCLDA_20)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 20.1	Pyruvate2acetate-formate	SCFA	7,141	30,183	Pyruvate to acetate and formate C. acetobutylicum	PFL_acetate	100%

c00032_gnlPro.. (original name was: gnl|Prokka|OLCMCLDA_32)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 32.1	Glycine_cleavage	Other	914	15,479	Glycine cleavage C. sticklandii	GLY	60%

No primary metabolite regions were found in these records:: c00001_gnlPro.. (original name was: gnl|Prokka|OLCMCLDA_1); c00002_gnlPro.. (original name was: gnl|Prokka|OLCMCLDA_2); c00004_gnlPro.. (original name was: gnl|Prokka|OLCMCLDA_4); c00005_gnlPro.. (original name was: gnl|Prokka|OLCMCLDA_5); c00006_gnlPro.. (original name was: gnl|Prokka|OLCMCLDA_6); c00007_gnlPro.. (original name was: gnl|Prokka|OLCMCLDA_7); c00009_gnlPro.. (original name was: gnl|Prokka|OLCMCLDA_9); c00010_gnlPro.. (original name was: gnl|Prokka|OLCMCLDA_10); c00011_gnlPro.. (original name was: gnl|Prokka|OLCMCLDA_11); c00012_gnlPro.. (original name was: gnl|Prokka|OLCMCLDA_12); c00013_gnlPro.. (original name was: gnl|Prokka|OLCMCLDA_13); c00014_gnlPro.. (original name was: gnl|Prokka|OLCMCLDA_14); c00016_gnlPro.. (original name was: gnl|Prokka|OLCMCLDA_16); c00017_gnlPro.. (original name was: gnl|Prokka|OLCMCLDA_17); c00018_gnlPro.. (original name was: gnl|Prokka|OLCMCLDA_18); c00019_gnlPro.. (original name was: gnl|Prokka|OLCMCLDA_19); c00021_gnlPro.. (original name was: gnl|Prokka|OLCMCLDA_21); c00022_gnlPro.. (original name was: gnl|Prokka|OLCMCLDA_22); c00023_gnlPro.. (original name was: gnl|Prokka|OLCMCLDA_23); c00024_gnlPro.. (original name was: gnl|Prokka|OLCMCLDA_24); c00025_gnlPro.. (original name was: gnl|Prokka|OLCMCLDA_25); c00026_gnlPro.. (original name was: gnl|Prokka|OLCMCLDA_26); c00027_gnlPro.. (original name was: gnl|Prokka|OLCMCLDA_27); c00028_gnlPro.. (original name was: gnl|Prokka|OLCMCLDA_28); c00029_gnlPro.. (original name was: gnl|Prokka|OLCMCLDA_29); c00030_gnlPro.. (original name was: gnl|Prokka|OLCMCLDA_30); c00031_gnlPro.. (original name was: gnl|Prokka|OLCMCLDA_31); c00033_gnlPro.. (original name was: gnl|Prokka|OLCMCLDA_33); c00034_gnlPro.. (original name was: gnl|Prokka|OLCMCLDA_34)

Compact view

c00003_gnlPro.. - Region 1 - PFOR_II_pathway

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Location: 40,642 - 64,220 nt. (total: 23,579 nt) Show pHMM detection rules used

PFOR_II_pathway: cds(POR and POR_N and PFOR_II and EKR and Fer4_16 and TPP_enzyme_C)

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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Similar known gene clusters

c00008_gnlPro.. - Region 1 - Fumarate2succinate

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Location: 16,661 - 40,150 nt. (total: 23,490 nt) Show pHMM detection rules used

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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c00015_gnlPro.. - Region 1 - TPP_fatty_acids,succinate2propionate

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Location: 24,374 - 60,025 nt. (total: 35,652 nt) Show pHMM detection rules used

TPP_fatty_acids: (TPP_enzyme_C and (minimum(2, [ACD1_car, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, Butyrate_kinase, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_2_CAF, CoA_trans_6_Glutaconate, E1_dh, ECH_1, ECH_2, HBT, HBT_2, HCDH, HpaB, Ketoacyl-synt_C, Thiolase_C, Thiolase_N, adh_short, adh_short_C2]) or FA_synthesis) and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and not (POR or POR_N))
succinate2propionate: (minimum(4, [AcetylCoA_hyd_C, AcetylCoA_hydro, B12-binding, Biotin_lipoyl, Glyoxalase_4, HMGL-like, MM_CoA_mutase, MeaB, OAD_beta, OAD_gamma, PYC_OADA]) and minimum(1, [CT_Btheta, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, CT_Vparvula]) and not Cytidylate_kin)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

c00020_gnlPro.. - Region 1 - Pyruvate2acetate-formate

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Location: 7,141 - 30,183 nt. (total: 23,043 nt) Show pHMM detection rules used

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

c00032_gnlPro.. - Region 1 - Glycine_cleavage

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Location: 914 - 15,479 nt. (total: 14,566 nt) Show pHMM detection rules used

Region on contig edge.

Glycine_cleavage: (minimum(2, [Aminotran_5, GCV_H, GCV_T, GDC-P, SoxG]) and GCV_H and GCV_T_C)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

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Gene details

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KnownClusterBlast

Similar known gene clusters