GCA_947382685.1 - 7 region(s)

Identified primary metabolite regions

c00003_gnlPro.. (original name was: gnl|Prokka|EALPJDNL_3)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 3.1	Pyruvate2acetate-formate	SCFA	61,326	84,301	Pyruvate to acetate-formate E. coli	PFL_acetate	100%

c00008_gnlPro.. (original name was: gnl|Prokka|EALPJDNL_8)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 8.1	TPP_fatty_acids	Putative	101,219	125,614

c00035_gnlPro.. (original name was: gnl|Prokka|EALPJDNL_35)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 35.1	succinate2propionate	SCFA	9,324	33,859	Succinate to propionate B. theta	PRO	50%

c00037_gnlPro.. (original name was: gnl|Prokka|EALPJDNL_37)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 37.1	OD_unknown	Putative	25,372	48,783

c00045_gnlPro.. (original name was: gnl|Prokka|EALPJDNL_45)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 45.1	Fumarate2succinate	SCFA	24,373	38,010	Fumarate to succinate B. thetaiotaomicron	SUC	100%

c00065_gnlPro.. (original name was: gnl|Prokka|EALPJDNL_65)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 65.1	Rnf_complex	E-MGC	1	22,655	Rnf complex C. sporogenes	RNF	50%

c00078_gnlPro.. (original name was: gnl|Prokka|EALPJDNL_78)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 78.1	TPP_AA_metabolism	Putative	1	14,157

No primary metabolite regions were found in these records:: c00001_gnlPro.. (original name was: gnl|Prokka|EALPJDNL_1); c00002_gnlPro.. (original name was: gnl|Prokka|EALPJDNL_2); c00004_gnlPro.. (original name was: gnl|Prokka|EALPJDNL_4); c00005_gnlPro.. (original name was: gnl|Prokka|EALPJDNL_5); c00006_gnlPro.. (original name was: gnl|Prokka|EALPJDNL_6); c00007_gnlPro.. (original name was: gnl|Prokka|EALPJDNL_7); c00009_gnlPro.. (original name was: gnl|Prokka|EALPJDNL_9); c00010_gnlPro.. (original name was: gnl|Prokka|EALPJDNL_10); c00011_gnlPro.. (original name was: gnl|Prokka|EALPJDNL_11); c00012_gnlPro.. (original name was: gnl|Prokka|EALPJDNL_12); c00013_gnlPro.. (original name was: gnl|Prokka|EALPJDNL_13); c00014_gnlPro.. (original name was: gnl|Prokka|EALPJDNL_14); c00015_gnlPro.. (original name was: gnl|Prokka|EALPJDNL_15); c00016_gnlPro.. (original name was: gnl|Prokka|EALPJDNL_16); c00017_gnlPro.. (original name was: gnl|Prokka|EALPJDNL_17); c00018_gnlPro.. (original name was: gnl|Prokka|EALPJDNL_18); c00019_gnlPro.. (original name was: gnl|Prokka|EALPJDNL_19); c00020_gnlPro.. (original name was: gnl|Prokka|EALPJDNL_20); c00021_gnlPro.. (original name was: gnl|Prokka|EALPJDNL_21); c00022_gnlPro.. (original name was: gnl|Prokka|EALPJDNL_22); c00023_gnlPro.. (original name was: gnl|Prokka|EALPJDNL_23); c00024_gnlPro.. (original name was: gnl|Prokka|EALPJDNL_24); c00025_gnlPro.. (original name was: gnl|Prokka|EALPJDNL_25); c00026_gnlPro.. (original name was: gnl|Prokka|EALPJDNL_26); c00027_gnlPro.. (original name was: gnl|Prokka|EALPJDNL_27); c00028_gnlPro.. (original name was: gnl|Prokka|EALPJDNL_28); c00029_gnlPro.. (original name was: gnl|Prokka|EALPJDNL_29); c00030_gnlPro.. (original name was: gnl|Prokka|EALPJDNL_30); c00031_gnlPro.. (original name was: gnl|Prokka|EALPJDNL_31); c00032_gnlPro.. (original name was: gnl|Prokka|EALPJDNL_32); c00033_gnlPro.. (original name was: gnl|Prokka|EALPJDNL_33); c00034_gnlPro.. (original name was: gnl|Prokka|EALPJDNL_34); c00036_gnlPro.. (original name was: gnl|Prokka|EALPJDNL_36); c00038_gnlPro.. (original name was: gnl|Prokka|EALPJDNL_38); c00039_gnlPro.. (original name was: gnl|Prokka|EALPJDNL_39); c00040_gnlPro.. (original name was: gnl|Prokka|EALPJDNL_40); c00041_gnlPro.. (original name was: gnl|Prokka|EALPJDNL_41); c00042_gnlPro.. (original name was: gnl|Prokka|EALPJDNL_42); c00043_gnlPro.. (original name was: gnl|Prokka|EALPJDNL_43); c00044_gnlPro.. (original name was: gnl|Prokka|EALPJDNL_44); c00046_gnlPro.. (original name was: gnl|Prokka|EALPJDNL_46); c00047_gnlPro.. (original name was: gnl|Prokka|EALPJDNL_47); c00048_gnlPro.. (original name was: gnl|Prokka|EALPJDNL_48); c00049_gnlPro.. (original name was: gnl|Prokka|EALPJDNL_49); c00050_gnlPro.. (original name was: gnl|Prokka|EALPJDNL_50); c00051_gnlPro.. (original name was: gnl|Prokka|EALPJDNL_51); c00052_gnlPro.. (original name was: gnl|Prokka|EALPJDNL_52); c00053_gnlPro.. (original name was: gnl|Prokka|EALPJDNL_53); c00054_gnlPro.. (original name was: gnl|Prokka|EALPJDNL_54); c00055_gnlPro.. (original name was: gnl|Prokka|EALPJDNL_55); c00056_gnlPro.. (original name was: gnl|Prokka|EALPJDNL_56); c00057_gnlPro.. (original name was: gnl|Prokka|EALPJDNL_57); c00058_gnlPro.. (original name was: gnl|Prokka|EALPJDNL_58); c00059_gnlPro.. (original name was: gnl|Prokka|EALPJDNL_59); c00060_gnlPro.. (original name was: gnl|Prokka|EALPJDNL_60); c00061_gnlPro.. (original name was: gnl|Prokka|EALPJDNL_61); c00062_gnlPro.. (original name was: gnl|Prokka|EALPJDNL_62); c00063_gnlPro.. (original name was: gnl|Prokka|EALPJDNL_63); c00064_gnlPro.. (original name was: gnl|Prokka|EALPJDNL_64); c00066_gnlPro.. (original name was: gnl|Prokka|EALPJDNL_66); c00067_gnlPro.. (original name was: gnl|Prokka|EALPJDNL_67); c00068_gnlPro.. (original name was: gnl|Prokka|EALPJDNL_68); c00069_gnlPro.. (original name was: gnl|Prokka|EALPJDNL_69); c00070_gnlPro.. (original name was: gnl|Prokka|EALPJDNL_70); c00071_gnlPro.. (original name was: gnl|Prokka|EALPJDNL_71); c00072_gnlPro.. (original name was: gnl|Prokka|EALPJDNL_72); c00073_gnlPro.. (original name was: gnl|Prokka|EALPJDNL_73); c00074_gnlPro.. (original name was: gnl|Prokka|EALPJDNL_74); c00075_gnlPro.. (original name was: gnl|Prokka|EALPJDNL_75); c00076_gnlPro.. (original name was: gnl|Prokka|EALPJDNL_76); c00077_gnlPro.. (original name was: gnl|Prokka|EALPJDNL_77); c00079_gnlPro.. (original name was: gnl|Prokka|EALPJDNL_79); c00080_gnlPro.. (original name was: gnl|Prokka|EALPJDNL_80); c00081_gnlPro.. (original name was: gnl|Prokka|EALPJDNL_81); c00082_gnlPro.. (original name was: gnl|Prokka|EALPJDNL_82); c00083_gnlPro.. (original name was: gnl|Prokka|EALPJDNL_83); c00084_gnlPro.. (original name was: gnl|Prokka|EALPJDNL_84); c00085_gnlPro.. (original name was: gnl|Prokka|EALPJDNL_85); c00086_gnlPro.. (original name was: gnl|Prokka|EALPJDNL_86); c00087_gnlPro.. (original name was: gnl|Prokka|EALPJDNL_87); c00088_gnlPro.. (original name was: gnl|Prokka|EALPJDNL_88); c00089_gnlPro.. (original name was: gnl|Prokka|EALPJDNL_89); c00090_gnlPro.. (original name was: gnl|Prokka|EALPJDNL_90)

Compact view

c00003_gnlPro.. - Region 1 - Pyruvate2acetate-formate

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Location: 61,326 - 84,301 nt. (total: 22,976 nt) Show pHMM detection rules used

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

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c00008_gnlPro.. - Region 1 - TPP_fatty_acids

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Location: 101,219 - 125,614 nt. (total: 24,396 nt) Show pHMM detection rules used

Region on contig edge.

TPP_fatty_acids: (TPP_enzyme_C and (minimum(2, [ACD1_car, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, Butyrate_kinase, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_2_CAF, CoA_trans_6_Glutaconate, E1_dh, ECH_1, ECH_2, HBT, HBT_2, HCDH, HpaB, Ketoacyl-synt_C, Thiolase_C, Thiolase_N, adh_short, adh_short_C2]) or FA_synthesis) and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and not (POR or POR_N))

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core biosynthetic genes

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KnownClusterBlast

Similar known gene clusters

No matches found.

c00035_gnlPro.. - Region 1 - succinate2propionate

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Location: 9,324 - 33,859 nt. (total: 24,536 nt) Show pHMM detection rules used

succinate2propionate: (minimum(4, [AcetylCoA_hyd_C, AcetylCoA_hydro, B12-binding, Biotin_lipoyl, Glyoxalase_4, HMGL-like, MM_CoA_mutase, MeaB, OAD_beta, OAD_gamma, PYC_OADA]) and minimum(1, [CT_Btheta, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, CT_Vparvula]) and not Cytidylate_kin)

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core biosynthetic genes

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KnownClusterBlast

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c00037_gnlPro.. - Region 1 - OD_unknown

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Location: 25,372 - 48,783 nt. (total: 23,412 nt) Show pHMM detection rules used

Region on contig edge.

OD_unknown: (minimum(1, [PFOR_II, POR, POR_N]) and minimum(2, [CoA_binding, CoA_binding_2, Ligase_CoA, PTAC, Succ_CoA_lig]) and not (Gly_radical_scatole or Gly_radical or Gly_430_pcre or Gly_8-9_TMA))

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

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KnownClusterBlast

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No matches found.

c00045_gnlPro.. - Region 1 - Fumarate2succinate

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Location: 24,373 - 38,010 nt. (total: 13,638 nt) Show pHMM detection rules used

Region on contig edge.

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

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c00065_gnlPro.. - Region 1 - Rnf_complex

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Location: 1 - 22,655 nt. (total: 22,655 nt) Show pHMM detection rules used

Region on contig edge.

Rnf_complex: (Complex1_51K and minimum(5, [FMN_bind, FeS, Fer4, Fer4_9, NQR2_RnfD_RnfE, Rnf-Nqr, RnfC_N, SLBB]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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KnownClusterBlast

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c00078_gnlPro.. - Region 1 - TPP_AA_metabolism

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Location: 1 - 14,157 nt. (total: 14,157 nt) Show pHMM detection rules used

Region on contig edge.

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.