Select genomic region:
Overview
4.1
9.1
13.1
19.1
31.1
34.1
56.1
60.1

### Identified primary metabolite regions

c00004_gnlPro.. (original name was: gnl|Prokka|FIDHCELB_4)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 4.1 | Fumarate2succinate | SCFA | 128,579 | 152,092 | Fumarate to succinate B. thetaiotaomicron | SUC | 100%

c00009_gnlPro.. (original name was: gnl|Prokka|FIDHCELB_9)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 9.1 | Rnf_complex | E-MGC | 66,778 | 91,986 | Rnf complex C. sporogenes | RNF | 83%

c00013_gnlPro.. (original name was: gnl|Prokka|FIDHCELB_13)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 13.1 | TPP_fatty_acids | Putative | 66,474 | 91,329 |

c00019_gnlPro.. (original name was: gnl|Prokka|FIDHCELB_19)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 19.1 | Others_HGD_unassigned | Putative | 6,884 | 31,107 |

c00031_gnlPro.. (original name was: gnl|Prokka|FIDHCELB_31)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 31.1 | succinate2propionate | SCFA | 1 | 14,565 | Succinate to propionate B. theta | PRO | 50%

c00034_gnlPro.. (original name was: gnl|Prokka|FIDHCELB_34)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 34.1 | TPP_AA_metabolism | Putative | 17,139 | 43,119 |

c00056_gnlPro.. (original name was: gnl|Prokka|FIDHCELB_56)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 56.1 | PFOR_II_pathway | SCFA | 14,913 | 31,445 | PFOR II pathway B. thetaiotaomicron | PFORII | 100%

c00060_gnlPro.. (original name was: gnl|Prokka|FIDHCELB_60)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 60.1 | Pyruvate2acetate-formate | SCFA | 13,363 | 28,125 | Pyruvate to acetate-formate B. thetaiotaomicron | PFL_acetate | 100%

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 4.1 | Fumarate2succinate | SCFA | 128,579 | 152,092 | Fumarate to succinate B. thetaiotaomicron | SUC | 100%
Region 9.1 | Rnf_complex | E-MGC | 66,778 | 91,986 | Rnf complex C. sporogenes | RNF | 83%
Region 13.1 | TPP_fatty_acids | Putative | 66,474 | 91,329 |
Region 19.1 | Others_HGD_unassigned | Putative | 6,884 | 31,107 |
Region 31.1 | succinate2propionate | SCFA | 1 | 14,565 | Succinate to propionate B. theta | PRO | 50%
Region 34.1 | TPP_AA_metabolism | Putative | 17,139 | 43,119 |
Region 56.1 | PFOR_II_pathway | SCFA | 14,913 | 31,445 | PFOR II pathway B. thetaiotaomicron | PFORII | 100%
Region 60.1 | Pyruvate2acetate-formate | SCFA | 13,363 | 28,125 | Pyruvate to acetate-formate B. thetaiotaomicron | PFL_acetate | 100%

No primary metabolite regions were found in these records:
  c00001_gnlPro.. (original name was: gnl|Prokka|FIDHCELB_1)
  c00002_gnlPro.. (original name was: gnl|Prokka|FIDHCELB_2)
  c00003_gnlPro.. (original name was: gnl|Prokka|FIDHCELB_3)
  c00005_gnlPro.. (original name was: gnl|Prokka|FIDHCELB_5)
  c00006_gnlPro.. (original name was: gnl|Prokka|FIDHCELB_6)
  c00007_gnlPro.. (original name was: gnl|Prokka|FIDHCELB_7)
  c00008_gnlPro.. (original name was: gnl|Prokka|FIDHCELB_8)
  c00010_gnlPro.. (original name was: gnl|Prokka|FIDHCELB_10)
  c00011_gnlPro.. (original name was: gnl|Prokka|FIDHCELB_11)
  c00012_gnlPro.. (original name was: gnl|Prokka|FIDHCELB_12)
  c00014_gnlPro.. (original name was: gnl|Prokka|FIDHCELB_14)
  c00015_gnlPro.. (original name was: gnl|Prokka|FIDHCELB_15)
  c00016_gnlPro.. (original name was: gnl|Prokka|FIDHCELB_16)
  c00017_gnlPro.. (original name was: gnl|Prokka|FIDHCELB_17)
  c00018_gnlPro.. (original name was: gnl|Prokka|FIDHCELB_18)
  c00020_gnlPro.. (original name was: gnl|Prokka|FIDHCELB_20)
  c00021_gnlPro.. (original name was: gnl|Prokka|FIDHCELB_21)
  c00022_gnlPro.. (original name was: gnl|Prokka|FIDHCELB_22)
  c00023_gnlPro.. (original name was: gnl|Prokka|FIDHCELB_23)
  c00024_gnlPro.. (original name was: gnl|Prokka|FIDHCELB_24)
  c00025_gnlPro.. (original name was: gnl|Prokka|FIDHCELB_25)
  c00026_gnlPro.. (original name was: gnl|Prokka|FIDHCELB_26)
  c00027_gnlPro.. (original name was: gnl|Prokka|FIDHCELB_27)
  c00028_gnlPro.. (original name was: gnl|Prokka|FIDHCELB_28)
  c00029_gnlPro.. (original name was: gnl|Prokka|FIDHCELB_29)
  c00030_gnlPro.. (original name was: gnl|Prokka|FIDHCELB_30)
  c00032_gnlPro.. (original name was: gnl|Prokka|FIDHCELB_32)
  c00033_gnlPro.. (original name was: gnl|Prokka|FIDHCELB_33)
  c00035_gnlPro.. (original name was: gnl|Prokka|FIDHCELB_35)
  c00036_gnlPro.. (original name was: gnl|Prokka|FIDHCELB_36)
  c00037_gnlPro.. (original name was: gnl|Prokka|FIDHCELB_37)
  c00038_gnlPro.. (original name was: gnl|Prokka|FIDHCELB_38)
  c00039_gnlPro.. (original name was: gnl|Prokka|FIDHCELB_39)
  c00040_gnlPro.. (original name was: gnl|Prokka|FIDHCELB_40)
  c00041_gnlPro.. (original name was: gnl|Prokka|FIDHCELB_41)
  c00042_gnlPro.. (original name was: gnl|Prokka|FIDHCELB_42)
  c00043_gnlPro.. (original name was: gnl|Prokka|FIDHCELB_43)
  c00044_gnlPro.. (original name was: gnl|Prokka|FIDHCELB_44)
  c00045_gnlPro.. (original name was: gnl|Prokka|FIDHCELB_45)
  c00046_gnlPro.. (original name was: gnl|Prokka|FIDHCELB_46)
  c00047_gnlPro.. (original name was: gnl|Prokka|FIDHCELB_47)
  c00048_gnlPro.. (original name was: gnl|Prokka|FIDHCELB_48)
  c00049_gnlPro.. (original name was: gnl|Prokka|FIDHCELB_49)
  c00050_gnlPro.. (original name was: gnl|Prokka|FIDHCELB_50)
  c00051_gnlPro.. (original name was: gnl|Prokka|FIDHCELB_51)
  c00052_gnlPro.. (original name was: gnl|Prokka|FIDHCELB_52)
  c00053_gnlPro.. (original name was: gnl|Prokka|FIDHCELB_53)
  c00054_gnlPro.. (original name was: gnl|Prokka|FIDHCELB_54)
  c00055_gnlPro.. (original name was: gnl|Prokka|FIDHCELB_55)
  c00057_gnlPro.. (original name was: gnl|Prokka|FIDHCELB_57)
  c00058_gnlPro.. (original name was: gnl|Prokka|FIDHCELB_58)
  c00059_gnlPro.. (original name was: gnl|Prokka|FIDHCELB_59)
  c00061_gnlPro.. (original name was: gnl|Prokka|FIDHCELB_61)
  c00062_gnlPro.. (original name was: gnl|Prokka|FIDHCELB_62)
  c00063_gnlPro.. (original name was: gnl|Prokka|FIDHCELB_63)
  c00064_gnlPro.. (original name was: gnl|Prokka|FIDHCELB_64)
  c00065_gnlPro.. (original name was: gnl|Prokka|FIDHCELB_65)
  c00066_gnlPro.. (original name was: gnl|Prokka|FIDHCELB_66)
  c00067_gnlPro.. (original name was: gnl|Prokka|FIDHCELB_67)
  c00068_gnlPro.. (original name was: gnl|Prokka|FIDHCELB_68)
  c00069_gnlPro.. (original name was: gnl|Prokka|FIDHCELB_69)
  c00070_gnlPro.. (original name was: gnl|Prokka|FIDHCELB_70)
  c00071_gnlPro.. (original name was: gnl|Prokka|FIDHCELB_71)
  c00072_gnlPro.. (original name was: gnl|Prokka|FIDHCELB_72)
  c00073_gnlPro.. (original name was: gnl|Prokka|FIDHCELB_73)
  c00074_gnlPro.. (original name was: gnl|Prokka|FIDHCELB_74)
  c00075_gnlPro.. (original name was: gnl|Prokka|FIDHCELB_75)
  c00076_gnlPro.. (original name was: gnl|Prokka|FIDHCELB_76)
  c00077_gnlPro.. (original name was: gnl|Prokka|FIDHCELB_77)
  c00078_gnlPro.. (original name was: gnl|Prokka|FIDHCELB_78)
  c00079_gnlPro.. (original name was: gnl|Prokka|FIDHCELB_79)
  c00080_gnlPro.. (original name was: gnl|Prokka|FIDHCELB_80)
  c00081_gnlPro.. (original name was: gnl|Prokka|FIDHCELB_81)
  c00082_gnlPro.. (original name was: gnl|Prokka|FIDHCELB_82)
  c00083_gnlPro.. (original name was: gnl|Prokka|FIDHCELB_83)
  c00084_gnlPro.. (original name was: gnl|Prokka|FIDHCELB_84)
  c00085_gnlPro.. (original name was: gnl|Prokka|FIDHCELB_85)
  c00086_gnlPro.. (original name was: gnl|Prokka|FIDHCELB_86)
  c00087_gnlPro.. (original name was: gnl|Prokka|FIDHCELB_87)
  c00088_gnlPro.. (original name was: gnl|Prokka|FIDHCELB_88)
  c00089_gnlPro.. (original name was: gnl|Prokka|FIDHCELB_89)
  c00090_gnlPro.. (original name was: gnl|Prokka|FIDHCELB_90)
  c00091_gnlPro.. (original name was: gnl|Prokka|FIDHCELB_91)
  c00092_gnlPro.. (original name was: gnl|Prokka|FIDHCELB_92)
  c00093_gnlPro.. (original name was: gnl|Prokka|FIDHCELB_93)
  c00094_gnlPro.. (original name was: gnl|Prokka|FIDHCELB_94)
  c00095_gnlPro.. (original name was: gnl|Prokka|FIDHCELB_95)
  c00096_gnlPro.. (original name was: gnl|Prokka|FIDHCELB_96)
  c00097_gnlPro.. (original name was: gnl|Prokka|FIDHCELB_97)
  c00098_gnlPro.. (original name was: gnl|Prokka|FIDHCELB_98)
  c00099_gnlPro.. (original name was: gnl|Prokka|FIDHCELB_99)
  c00100_gnlPro.. (original name was: gnl|Prokka|FIDHCELB_100)
  c00101_gnlPro.. (original name was: gnl|Prokka|FIDHCELB_101)
  c00102_gnlPro.. (original name was: gnl|Prokka|FIDHCELB_102)
  c00103_gnlPro.. (original name was: gnl|Prokka|FIDHCELB_103)
  c00104_gnlPro.. (original name was: gnl|Prokka|FIDHCELB_104)
  c00105_gnlPro.. (original name was: gnl|Prokka|FIDHCELB_105)
  c00106_gnlPro.. (original name was: gnl|Prokka|FIDHCELB_106)
  c00107_gnlPro.. (original name was: gnl|Prokka|FIDHCELB_107)
  c00108_gnlPro.. (original name was: gnl|Prokka|FIDHCELB_108)
  c00109_gnlPro.. (original name was: gnl|Prokka|FIDHCELB_109)
  c00110_gnlPro.. (original name was: gnl|Prokka|FIDHCELB_110)
  c00111_gnlPro.. (original name was: gnl|Prokka|FIDHCELB_111)
  c00112_gnlPro.. (original name was: gnl|Prokka|FIDHCELB_112)
  c00113_gnlPro.. (original name was: gnl|Prokka|FIDHCELB_113)
  c00114_gnlPro.. (original name was: gnl|Prokka|FIDHCELB_114)
  c00115_gnlPro.. (original name was: gnl|Prokka|FIDHCELB_115)
  c00116_gnlPro.. (original name was: gnl|Prokka|FIDHCELB_116)
  c00117_gnlPro.. (original name was: gnl|Prokka|FIDHCELB_117)
  c00118_gnlPro.. (original name was: gnl|Prokka|FIDHCELB_118)
  c00119_gnlPro.. (original name was: gnl|Prokka|FIDHCELB_119)
  c00120_gnlPro.. (original name was: gnl|Prokka|FIDHCELB_120)
  c00121_gnlPro.. (original name was: gnl|Prokka|FIDHCELB_121)
  c00122_gnlPro.. (original name was: gnl|Prokka|FIDHCELB_122)
  c00123_gnlPro.. (original name was: gnl|Prokka|FIDHCELB_123)
  c00124_gnlPro.. (original name was: gnl|Prokka|FIDHCELB_124)

Compact view
c00004_gnlPro.. - Region 1 - Fumarate2succinate
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 128,579 - 152,092 nt. (total: 23,514 nt) Show pHMM detection rules used
Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
c00009_gnlPro.. - Region 1 - Rnf_complex
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 66,778 - 91,986 nt. (total: 25,209 nt) Show pHMM detection rules used
Rnf_complex: (Complex1_51K and minimum(5, [FMN_bind, FeS, Fer4, Fer4_9, NQR2_RnfD_RnfE, Rnf-Nqr, RnfC_N, SLBB]))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
c00013_gnlPro.. - Region 1 - TPP_fatty_acids
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 66,474 - 91,329 nt. (total: 24,856 nt) Show pHMM detection rules used
TPP_fatty_acids: (TPP_enzyme_C and (minimum(2, [ACD1_car, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, Butyrate_kinase, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_2_CAF, CoA_trans_6_Glutaconate, E1_dh, ECH_1, ECH_2, HBT, HBT_2, HCDH, HpaB, Ketoacyl-synt_C, Thiolase_C, Thiolase_N, adh_short, adh_short_C2]) or FA_synthesis) and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and not (POR or POR_N))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.

No matches found.

c00019_gnlPro.. - Region 1 - Others_HGD_unassigned
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 6,884 - 31,107 nt. (total: 24,224 nt) Show pHMM detection rules used
Others_HGD_unassigned: (minimum(1, [HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Lactoyl-CoA1, Lactoyl-CoA2]) and minimum(1, [ACP_syn_III, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AdoHcyase_NAD, AlaDh_PNT_C, BcrAD_BadFG, Biotin_lipoyl, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_6_Glutaconate, CoA_transf_3, ECH_1, ECH_2, ETF, ETF_alpha, FGGY_C, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, Mal_decarbox_Al, Peptidase_M22, Peptidase_M23, Thiolase_C, Thiolase_N, ketoacyl-synt]) and not (minimum(2, [AcetylCoA_hyd_C, BcrAD_BadFG, CoA_trans, CoA_trans_230_acto, Mal_decarbox_Al]) and Lactoyl-CoA2 and Lactoyl-CoA1) and not (minimum(4, [ACP_syn_III, ACP_syn_III_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AlaDh_PNT_C, BcrAD_BadFG, ECH_1, ECH_2, ETF, ETF_alpha, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, IlvN, NAD_Gly3P_dh_N, Thiolase_C, Thiolase_N, ketoacyl-synt]) and HAAA1 and not HleuS1))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.

No matches found.

c00031_gnlPro.. - Region 1 - succinate2propionate
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 1 - 14,565 nt. (total: 14,565 nt) Show pHMM detection rules used
Region on contig edge.
succinate2propionate: (minimum(4, [AcetylCoA_hyd_C, AcetylCoA_hydro, B12-binding, Biotin_lipoyl, Glyoxalase_4, HMGL-like, MM_CoA_mutase, MeaB, OAD_beta, OAD_gamma, PYC_OADA]) and minimum(1, [CT_Btheta, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, CT_Vparvula]) and not Cytidylate_kin)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
c00034_gnlPro.. - Region 1 - TPP_AA_metabolism
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 17,139 - 43,119 nt. (total: 25,981 nt) Show pHMM detection rules used
TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.

No matches found.

c00056_gnlPro.. - Region 1 - PFOR_II_pathway
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 14,913 - 31,445 nt. (total: 16,533 nt) Show pHMM detection rules used
Region on contig edge.
PFOR_II_pathway: cds(POR and POR_N and PFOR_II and EKR and Fer4_16 and TPP_enzyme_C)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
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zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
c00060_gnlPro.. - Region 1 - Pyruvate2acetate-formate
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 13,363 - 28,125 nt. (total: 14,763 nt) Show pHMM detection rules used
Region on contig edge.
Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.