GCA_948470215.1 - 7 region(s)

Identified primary metabolite regions

c00004_gnlPro.. (original name was: gnl|Prokka|OJDEPEII_4)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 4.1	OD_fatty_acids	Putative	34,811	59,610

c00007_gnlPro.. (original name was: gnl|Prokka|OJDEPEII_7)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 7.1	Pyruvate2acetate-formate	SCFA	42,048	57,188	Pyruvate to acetate-formate B. thetaiotaomicron	PFL_acetate	100%

c00016_gnlPro.. (original name was: gnl|Prokka|OJDEPEII_16)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 16.1	NADH_dehydrogenase_I	E-MGC	1	28,921	NADH dehydrogenase I Bacteroides sp.	NADHD	47%

c00022_gnlPro.. (original name was: gnl|Prokka|OJDEPEII_22)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 22.1	TPP_AA_metabolism	Putative	1	12,989

c00036_gnlPro.. (original name was: gnl|Prokka|OJDEPEII_36)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 36.1	Rnf_complex	E-MGC	11,166	24,438	Rnf complex C. sporogenes	RNF	50%

c00100_gnlPro.. (original name was: gnl|Prokka|OJDEPEII_100)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 100.1	Putrescine2spermidine	Aliphatic_amine	1	7,990	Arginine2putrescine R. gnavus	PUTR	40%

c00101_gnlPro.. (original name was: gnl|Prokka|OJDEPEII_101)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 101.1	succinate2propionate	SCFA	1	7,782	Succinate to propionate B. theta	PRO	41%

Region	Type	Class	From	To	Most similar known cluster	Similarity
Region 4.1	OD_fatty_acids	Putative	34,811	59,610
Region 7.1	Pyruvate2acetate-formate	SCFA	42,048	57,188	Pyruvate to acetate-formate B. thetaiotaomicron	PFL_acetate	100%
Region 16.1	NADH_dehydrogenase_I	E-MGC	1	28,921	NADH dehydrogenase I Bacteroides sp.	NADHD	47%
Region 22.1	TPP_AA_metabolism	Putative	1	12,989
Region 36.1	Rnf_complex	E-MGC	11,166	24,438	Rnf complex C. sporogenes	RNF	50%
Region 100.1	Putrescine2spermidine	Aliphatic_amine	1	7,990	Arginine2putrescine R. gnavus	PUTR	40%
Region 101.1	succinate2propionate	SCFA	1	7,782	Succinate to propionate B. theta	PRO	41%

No primary metabolite regions were found in these records:: c00001_gnlPro.. (original name was: gnl|Prokka|OJDEPEII_1); c00002_gnlPro.. (original name was: gnl|Prokka|OJDEPEII_2); c00003_gnlPro.. (original name was: gnl|Prokka|OJDEPEII_3); c00005_gnlPro.. (original name was: gnl|Prokka|OJDEPEII_5); c00006_gnlPro.. (original name was: gnl|Prokka|OJDEPEII_6); c00008_gnlPro.. (original name was: gnl|Prokka|OJDEPEII_8); c00009_gnlPro.. (original name was: gnl|Prokka|OJDEPEII_9); c00010_gnlPro.. (original name was: gnl|Prokka|OJDEPEII_10); c00011_gnlPro.. (original name was: gnl|Prokka|OJDEPEII_11); c00012_gnlPro.. (original name was: gnl|Prokka|OJDEPEII_12); c00013_gnlPro.. (original name was: gnl|Prokka|OJDEPEII_13); c00014_gnlPro.. (original name was: gnl|Prokka|OJDEPEII_14); c00015_gnlPro.. (original name was: gnl|Prokka|OJDEPEII_15); c00017_gnlPro.. (original name was: gnl|Prokka|OJDEPEII_17); c00018_gnlPro.. (original name was: gnl|Prokka|OJDEPEII_18); c00019_gnlPro.. (original name was: gnl|Prokka|OJDEPEII_19); c00020_gnlPro.. (original name was: gnl|Prokka|OJDEPEII_20); c00021_gnlPro.. (original name was: gnl|Prokka|OJDEPEII_21); c00023_gnlPro.. (original name was: gnl|Prokka|OJDEPEII_23); c00024_gnlPro.. (original name was: gnl|Prokka|OJDEPEII_24); c00025_gnlPro.. (original name was: gnl|Prokka|OJDEPEII_25); c00026_gnlPro.. (original name was: gnl|Prokka|OJDEPEII_26); c00027_gnlPro.. (original name was: gnl|Prokka|OJDEPEII_27); c00028_gnlPro.. (original name was: gnl|Prokka|OJDEPEII_28); c00029_gnlPro.. (original name was: gnl|Prokka|OJDEPEII_29); c00030_gnlPro.. (original name was: gnl|Prokka|OJDEPEII_30); c00031_gnlPro.. (original name was: gnl|Prokka|OJDEPEII_31); c00032_gnlPro.. (original name was: gnl|Prokka|OJDEPEII_32); c00033_gnlPro.. (original name was: gnl|Prokka|OJDEPEII_33); c00034_gnlPro.. (original name was: gnl|Prokka|OJDEPEII_34); c00035_gnlPro.. (original name was: gnl|Prokka|OJDEPEII_35); c00037_gnlPro.. (original name was: gnl|Prokka|OJDEPEII_37); c00038_gnlPro.. (original name was: gnl|Prokka|OJDEPEII_38); c00039_gnlPro.. (original name was: gnl|Prokka|OJDEPEII_39); c00040_gnlPro.. (original name was: gnl|Prokka|OJDEPEII_40); c00041_gnlPro.. (original name was: gnl|Prokka|OJDEPEII_41); c00042_gnlPro.. (original name was: gnl|Prokka|OJDEPEII_42); c00043_gnlPro.. (original name was: gnl|Prokka|OJDEPEII_43); c00044_gnlPro.. (original name was: gnl|Prokka|OJDEPEII_44); c00045_gnlPro.. (original name was: gnl|Prokka|OJDEPEII_45); c00046_gnlPro.. (original name was: gnl|Prokka|OJDEPEII_46); c00047_gnlPro.. (original name was: gnl|Prokka|OJDEPEII_47); c00048_gnlPro.. (original name was: gnl|Prokka|OJDEPEII_48); c00049_gnlPro.. (original name was: gnl|Prokka|OJDEPEII_49); c00050_gnlPro.. (original name was: gnl|Prokka|OJDEPEII_50); c00051_gnlPro.. (original name was: gnl|Prokka|OJDEPEII_51); c00052_gnlPro.. (original name was: gnl|Prokka|OJDEPEII_52); c00053_gnlPro.. (original name was: gnl|Prokka|OJDEPEII_53); c00054_gnlPro.. (original name was: gnl|Prokka|OJDEPEII_54); c00055_gnlPro.. (original name was: gnl|Prokka|OJDEPEII_55); c00056_gnlPro.. (original name was: gnl|Prokka|OJDEPEII_56); c00057_gnlPro.. (original name was: gnl|Prokka|OJDEPEII_57); c00058_gnlPro.. (original name was: gnl|Prokka|OJDEPEII_58); c00059_gnlPro.. (original name was: gnl|Prokka|OJDEPEII_59); c00060_gnlPro.. (original name was: gnl|Prokka|OJDEPEII_60); c00061_gnlPro.. (original name was: gnl|Prokka|OJDEPEII_61); c00062_gnlPro.. (original name was: gnl|Prokka|OJDEPEII_62); c00063_gnlPro.. (original name was: gnl|Prokka|OJDEPEII_63); c00064_gnlPro.. (original name was: gnl|Prokka|OJDEPEII_64); c00065_gnlPro.. (original name was: gnl|Prokka|OJDEPEII_65); c00066_gnlPro.. (original name was: gnl|Prokka|OJDEPEII_66); c00067_gnlPro.. (original name was: gnl|Prokka|OJDEPEII_67); c00068_gnlPro.. (original name was: gnl|Prokka|OJDEPEII_68); c00069_gnlPro.. (original name was: gnl|Prokka|OJDEPEII_69); c00070_gnlPro.. (original name was: gnl|Prokka|OJDEPEII_70); c00071_gnlPro.. (original name was: gnl|Prokka|OJDEPEII_71); c00072_gnlPro.. (original name was: gnl|Prokka|OJDEPEII_72); c00073_gnlPro.. (original name was: gnl|Prokka|OJDEPEII_73); c00074_gnlPro.. (original name was: gnl|Prokka|OJDEPEII_74); c00075_gnlPro.. (original name was: gnl|Prokka|OJDEPEII_75); c00076_gnlPro.. (original name was: gnl|Prokka|OJDEPEII_76); c00077_gnlPro.. (original name was: gnl|Prokka|OJDEPEII_77); c00078_gnlPro.. (original name was: gnl|Prokka|OJDEPEII_78); c00079_gnlPro.. (original name was: gnl|Prokka|OJDEPEII_79); c00080_gnlPro.. (original name was: gnl|Prokka|OJDEPEII_80); c00081_gnlPro.. (original name was: gnl|Prokka|OJDEPEII_81); c00082_gnlPro.. (original name was: gnl|Prokka|OJDEPEII_82); c00083_gnlPro.. (original name was: gnl|Prokka|OJDEPEII_83); c00084_gnlPro.. (original name was: gnl|Prokka|OJDEPEII_84); c00085_gnlPro.. (original name was: gnl|Prokka|OJDEPEII_85); c00086_gnlPro.. (original name was: gnl|Prokka|OJDEPEII_86); c00087_gnlPro.. (original name was: gnl|Prokka|OJDEPEII_87); c00088_gnlPro.. (original name was: gnl|Prokka|OJDEPEII_88); c00089_gnlPro.. (original name was: gnl|Prokka|OJDEPEII_89); c00090_gnlPro.. (original name was: gnl|Prokka|OJDEPEII_90); c00091_gnlPro.. (original name was: gnl|Prokka|OJDEPEII_91); c00092_gnlPro.. (original name was: gnl|Prokka|OJDEPEII_92); c00093_gnlPro.. (original name was: gnl|Prokka|OJDEPEII_93); c00094_gnlPro.. (original name was: gnl|Prokka|OJDEPEII_94); c00095_gnlPro.. (original name was: gnl|Prokka|OJDEPEII_95); c00096_gnlPro.. (original name was: gnl|Prokka|OJDEPEII_96); c00097_gnlPro.. (original name was: gnl|Prokka|OJDEPEII_97); c00098_gnlPro.. (original name was: gnl|Prokka|OJDEPEII_98); c00099_gnlPro.. (original name was: gnl|Prokka|OJDEPEII_99); c00102_gnlPro.. (original name was: gnl|Prokka|OJDEPEII_102); c00103_gnlPro.. (original name was: gnl|Prokka|OJDEPEII_103); c00104_gnlPro.. (original name was: gnl|Prokka|OJDEPEII_104); c00105_gnlPro.. (original name was: gnl|Prokka|OJDEPEII_105); c00106_gnlPro.. (original name was: gnl|Prokka|OJDEPEII_106); c00107_gnlPro.. (original name was: gnl|Prokka|OJDEPEII_107); c00108_gnlPro.. (original name was: gnl|Prokka|OJDEPEII_108); c00109_gnlPro.. (original name was: gnl|Prokka|OJDEPEII_109); c00110_gnlPro.. (original name was: gnl|Prokka|OJDEPEII_110); c00111_gnlPro.. (original name was: gnl|Prokka|OJDEPEII_111); c00112_gnlPro.. (original name was: gnl|Prokka|OJDEPEII_112); c00113_gnlPro.. (original name was: gnl|Prokka|OJDEPEII_113); c00114_gnlPro.. (original name was: gnl|Prokka|OJDEPEII_114); c00115_gnlPro.. (original name was: gnl|Prokka|OJDEPEII_115); c00116_gnlPro.. (original name was: gnl|Prokka|OJDEPEII_116); c00117_gnlPro.. (original name was: gnl|Prokka|OJDEPEII_117); c00118_gnlPro.. (original name was: gnl|Prokka|OJDEPEII_118); c00119_gnlPro.. (original name was: gnl|Prokka|OJDEPEII_119); c00120_gnlPro.. (original name was: gnl|Prokka|OJDEPEII_120); c00121_gnlPro.. (original name was: gnl|Prokka|OJDEPEII_121); c00122_gnlPro.. (original name was: gnl|Prokka|OJDEPEII_122); c00123_gnlPro.. (original name was: gnl|Prokka|OJDEPEII_123); c00124_gnlPro.. (original name was: gnl|Prokka|OJDEPEII_124); c00125_gnlPro.. (original name was: gnl|Prokka|OJDEPEII_125); c00126_gnlPro.. (original name was: gnl|Prokka|OJDEPEII_126); c00127_gnlPro.. (original name was: gnl|Prokka|OJDEPEII_127); c00128_gnlPro.. (original name was: gnl|Prokka|OJDEPEII_128); c00129_gnlPro.. (original name was: gnl|Prokka|OJDEPEII_129); c00130_gnlPro.. (original name was: gnl|Prokka|OJDEPEII_130); c00131_gnlPro.. (original name was: gnl|Prokka|OJDEPEII_131); c00132_gnlPro.. (original name was: gnl|Prokka|OJDEPEII_132); c00133_gnlPro.. (original name was: gnl|Prokka|OJDEPEII_133); c00134_gnlPro.. (original name was: gnl|Prokka|OJDEPEII_134); c00135_gnlPro.. (original name was: gnl|Prokka|OJDEPEII_135); c00136_gnlPro.. (original name was: gnl|Prokka|OJDEPEII_136); c00137_gnlPro.. (original name was: gnl|Prokka|OJDEPEII_137); c00138_gnlPro.. (original name was: gnl|Prokka|OJDEPEII_138)

Compact view

c00004_gnlPro.. - Region 1 - OD_fatty_acids

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Location: 34,811 - 59,610 nt. (total: 24,800 nt) Show pHMM detection rules used

OD_fatty_acids: (minimum(1, [PFOR_II, POR, POR_N]) and (minimum(2, [ACD1_car, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, Butyrate_kinase, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_2_CAF, CoA_trans_6_Glutaconate, E1_dh, ECH_1, ECH_2, HBT, HBT_2, HCDH, HpaB, Ketoacyl-synt_C, Thiolase_C, Thiolase_N, adh_short, adh_short_C2]) or FA_synthesis) and not (Gly_radical_scatole or Gly_radical or Gly_430_pcre or Gly_8-9_TMA))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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KnownClusterBlast

Similar known gene clusters

No matches found.

c00007_gnlPro.. - Region 1 - Pyruvate2acetate-formate

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Location: 42,048 - 57,188 nt. (total: 15,141 nt) Show pHMM detection rules used

Region on contig edge.

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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KnownClusterBlast

Similar known gene clusters

c00016_gnlPro.. - Region 1 - NADH_dehydrogenase_I

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Location: 1 - 28,921 nt. (total: 28,921 nt) Show pHMM detection rules used

Region on contig edge.

NADH_dehydrogenase_I: (Oxidored_q4 and Oxidored_q6 and Complex1_30kDa and Complex1_49kDa and NADHdh and Oxidored_q3 and Oxidored_q2 and minimum(4, [Fe-2S_thioredx, Fer2_4, Fer4_7, Molybdop_Fe4S4, Molydop_binding, NADH-G_4Fe-4S_3, NADH_4Fe-4S, Proton_antipo_M, Proton_antipo_N, SLBB]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

c00022_gnlPro.. - Region 1 - TPP_AA_metabolism

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Location: 1 - 12,989 nt. (total: 12,989 nt) Show pHMM detection rules used

Region on contig edge.

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.

c00036_gnlPro.. - Region 1 - Rnf_complex

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Location: 11,166 - 24,438 nt. (total: 13,273 nt) Show pHMM detection rules used

Region on contig edge.

Rnf_complex: (Complex1_51K and minimum(5, [FMN_bind, FeS, Fer4, Fer4_9, NQR2_RnfD_RnfE, Rnf-Nqr, RnfC_N, SLBB]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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KnownClusterBlast

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c00100_gnlPro.. - Region 1 - Putrescine2spermidine

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Location: 1 - 7,990 nt. (total: 7,990 nt) Show pHMM detection rules used

Region on contig edge.

Putrescine2spermidine: (minimum(2, [AdoMet_dc, Spermine_synt_N, Spermine_synth]) or (Orn_DAP_Arg_deC and Sacchrp_dh_C))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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c00101_gnlPro.. - Region 1 - succinate2propionate

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Location: 1 - 7,782 nt. (total: 7,782 nt) Show pHMM detection rules used

Region on contig edge.

succinate2propionate: (minimum(4, [AcetylCoA_hyd_C, AcetylCoA_hydro, B12-binding, Biotin_lipoyl, Glyoxalase_4, HMGL-like, MM_CoA_mutase, MeaB, OAD_beta, OAD_gamma, PYC_OADA]) and minimum(1, [CT_Btheta, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, CT_Vparvula]) and not Cytidylate_kin)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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Gene details

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KnownClusterBlast

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