GCA_948479305.1 - 5 region(s)

Identified primary metabolite regions

c00003_gnlPro.. (original name was: gnl|Prokka|FAKEJFFK_3)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 3.1	Fumarate2succinate	SCFA	146,740	170,210	Fumarate to succinate B. thetaiotaomicron	SUC	100%

c00004_gnlPro.. (original name was: gnl|Prokka|FAKEJFFK_4)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 4.1	TPP_AA_metabolism	Putative	254,906	280,873

c00007_gnlPro.. (original name was: gnl|Prokka|FAKEJFFK_7)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 7.1	Pyruvate2acetate-formate	SCFA	58,150	81,125	Pyruvate to acetate-formate E. coli	PFL_acetate	100%

c00009_gnlPro.. (original name was: gnl|Prokka|FAKEJFFK_9)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 9.1	Rnf_complex	E-MGC	159,109	184,169	Rnf complex C. sporogenes	RNF	83%

c00027_gnlPro.. (original name was: gnl|Prokka|FAKEJFFK_27)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 27.1	OD_unknown	Putative	15,877	38,337

No primary metabolite regions were found in these records:: c00001_gnlPro.. (original name was: gnl|Prokka|FAKEJFFK_1); c00002_gnlPro.. (original name was: gnl|Prokka|FAKEJFFK_2); c00005_gnlPro.. (original name was: gnl|Prokka|FAKEJFFK_5); c00006_gnlPro.. (original name was: gnl|Prokka|FAKEJFFK_6); c00008_gnlPro.. (original name was: gnl|Prokka|FAKEJFFK_8); c00010_gnlPro.. (original name was: gnl|Prokka|FAKEJFFK_10); c00011_gnlPro.. (original name was: gnl|Prokka|FAKEJFFK_11); c00012_gnlPro.. (original name was: gnl|Prokka|FAKEJFFK_12); c00013_gnlPro.. (original name was: gnl|Prokka|FAKEJFFK_13); c00014_gnlPro.. (original name was: gnl|Prokka|FAKEJFFK_14); c00015_gnlPro.. (original name was: gnl|Prokka|FAKEJFFK_15); c00016_gnlPro.. (original name was: gnl|Prokka|FAKEJFFK_16); c00017_gnlPro.. (original name was: gnl|Prokka|FAKEJFFK_17); c00018_gnlPro.. (original name was: gnl|Prokka|FAKEJFFK_18); c00019_gnlPro.. (original name was: gnl|Prokka|FAKEJFFK_19); c00020_gnlPro.. (original name was: gnl|Prokka|FAKEJFFK_20); c00021_gnlPro.. (original name was: gnl|Prokka|FAKEJFFK_21); c00022_gnlPro.. (original name was: gnl|Prokka|FAKEJFFK_22); c00023_gnlPro.. (original name was: gnl|Prokka|FAKEJFFK_23); c00024_gnlPro.. (original name was: gnl|Prokka|FAKEJFFK_24); c00025_gnlPro.. (original name was: gnl|Prokka|FAKEJFFK_25); c00026_gnlPro.. (original name was: gnl|Prokka|FAKEJFFK_26); c00028_gnlPro.. (original name was: gnl|Prokka|FAKEJFFK_28); c00029_gnlPro.. (original name was: gnl|Prokka|FAKEJFFK_29); c00030_gnlPro.. (original name was: gnl|Prokka|FAKEJFFK_30); c00031_gnlPro.. (original name was: gnl|Prokka|FAKEJFFK_31); c00032_gnlPro.. (original name was: gnl|Prokka|FAKEJFFK_32); c00033_gnlPro.. (original name was: gnl|Prokka|FAKEJFFK_33); c00034_gnlPro.. (original name was: gnl|Prokka|FAKEJFFK_34); c00035_gnlPro.. (original name was: gnl|Prokka|FAKEJFFK_35); c00036_gnlPro.. (original name was: gnl|Prokka|FAKEJFFK_36); c00037_gnlPro.. (original name was: gnl|Prokka|FAKEJFFK_37); c00038_gnlPro.. (original name was: gnl|Prokka|FAKEJFFK_38); c00039_gnlPro.. (original name was: gnl|Prokka|FAKEJFFK_39); c00040_gnlPro.. (original name was: gnl|Prokka|FAKEJFFK_40); c00041_gnlPro.. (original name was: gnl|Prokka|FAKEJFFK_41); c00042_gnlPro.. (original name was: gnl|Prokka|FAKEJFFK_42); c00043_gnlPro.. (original name was: gnl|Prokka|FAKEJFFK_43); c00044_gnlPro.. (original name was: gnl|Prokka|FAKEJFFK_44); c00045_gnlPro.. (original name was: gnl|Prokka|FAKEJFFK_45); c00046_gnlPro.. (original name was: gnl|Prokka|FAKEJFFK_46)

Compact view

c00003_gnlPro.. - Region 1 - Fumarate2succinate

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Location: 146,740 - 170,210 nt. (total: 23,471 nt) Show pHMM detection rules used

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

c00004_gnlPro.. - Region 1 - TPP_AA_metabolism

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Location: 254,906 - 280,873 nt. (total: 25,968 nt) Show pHMM detection rules used

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.

c00007_gnlPro.. - Region 1 - Pyruvate2acetate-formate

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Location: 58,150 - 81,125 nt. (total: 22,976 nt) Show pHMM detection rules used

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

c00009_gnlPro.. - Region 1 - Rnf_complex

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Location: 159,109 - 184,169 nt. (total: 25,061 nt) Show pHMM detection rules used

Rnf_complex: (Complex1_51K and minimum(5, [FMN_bind, FeS, Fer4, Fer4_9, NQR2_RnfD_RnfE, Rnf-Nqr, RnfC_N, SLBB]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

c00027_gnlPro.. - Region 1 - OD_unknown

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Location: 15,877 - 38,337 nt. (total: 22,461 nt) Show pHMM detection rules used

Region on contig edge.

OD_unknown: (minimum(1, [PFOR_II, POR, POR_N]) and minimum(2, [CoA_binding, CoA_binding_2, Ligase_CoA, PTAC, Succ_CoA_lig]) and not (Gly_radical_scatole or Gly_radical or Gly_430_pcre or Gly_8-9_TMA))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

No matches found.