GCA_948522245.1 - 6 region(s)

Identified primary metabolite regions

c00006_gnlPro.. (original name was: gnl|Prokka|ADLKOMBC_6)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 6.1	Pyruvate2acetate-formate	SCFA	63,573	86,548	Pyruvate to acetate-formate E. coli	PFL_acetate	100%

c00014_gnlPro.. (original name was: gnl|Prokka|ADLKOMBC_14)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 14.1	Fumarate2succinate	SCFA	2,582	26,052	Fumarate to succinate B. thetaiotaomicron	SUC	100%

c00016_gnlPro.. (original name was: gnl|Prokka|ADLKOMBC_16)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 16.1	Rnf_complex	E-MGC	28,776	53,836	Rnf complex C. sporogenes	RNF	83%

c00029_gnlPro.. (original name was: gnl|Prokka|ADLKOMBC_29)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 29.1	TPP_AA_metabolism	Putative	6,411	32,333

c00038_gnlPro.. (original name was: gnl|Prokka|ADLKOMBC_38)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 38.1	OD_unknown	Putative	1	23,037

c00049_gnlPro.. (original name was: gnl|Prokka|ADLKOMBC_49)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 49.1	succinate2propionate	SCFA	1,098	25,625	Succinate to propionate B. theta	PRO	50%

No primary metabolite regions were found in these records:: c00001_gnlPro.. (original name was: gnl|Prokka|ADLKOMBC_1); c00002_gnlPro.. (original name was: gnl|Prokka|ADLKOMBC_2); c00003_gnlPro.. (original name was: gnl|Prokka|ADLKOMBC_3); c00004_gnlPro.. (original name was: gnl|Prokka|ADLKOMBC_4); c00005_gnlPro.. (original name was: gnl|Prokka|ADLKOMBC_5); c00007_gnlPro.. (original name was: gnl|Prokka|ADLKOMBC_7); c00008_gnlPro.. (original name was: gnl|Prokka|ADLKOMBC_8); c00009_gnlPro.. (original name was: gnl|Prokka|ADLKOMBC_9); c00010_gnlPro.. (original name was: gnl|Prokka|ADLKOMBC_10); c00011_gnlPro.. (original name was: gnl|Prokka|ADLKOMBC_11); c00012_gnlPro.. (original name was: gnl|Prokka|ADLKOMBC_12); c00013_gnlPro.. (original name was: gnl|Prokka|ADLKOMBC_13); c00015_gnlPro.. (original name was: gnl|Prokka|ADLKOMBC_15); c00017_gnlPro.. (original name was: gnl|Prokka|ADLKOMBC_17); c00018_gnlPro.. (original name was: gnl|Prokka|ADLKOMBC_18); c00019_gnlPro.. (original name was: gnl|Prokka|ADLKOMBC_19); c00020_gnlPro.. (original name was: gnl|Prokka|ADLKOMBC_20); c00021_gnlPro.. (original name was: gnl|Prokka|ADLKOMBC_21); c00022_gnlPro.. (original name was: gnl|Prokka|ADLKOMBC_22); c00023_gnlPro.. (original name was: gnl|Prokka|ADLKOMBC_23); c00024_gnlPro.. (original name was: gnl|Prokka|ADLKOMBC_24); c00025_gnlPro.. (original name was: gnl|Prokka|ADLKOMBC_25); c00026_gnlPro.. (original name was: gnl|Prokka|ADLKOMBC_26); c00027_gnlPro.. (original name was: gnl|Prokka|ADLKOMBC_27); c00028_gnlPro.. (original name was: gnl|Prokka|ADLKOMBC_28); c00030_gnlPro.. (original name was: gnl|Prokka|ADLKOMBC_30); c00031_gnlPro.. (original name was: gnl|Prokka|ADLKOMBC_31); c00032_gnlPro.. (original name was: gnl|Prokka|ADLKOMBC_32); c00033_gnlPro.. (original name was: gnl|Prokka|ADLKOMBC_33); c00034_gnlPro.. (original name was: gnl|Prokka|ADLKOMBC_34); c00035_gnlPro.. (original name was: gnl|Prokka|ADLKOMBC_35); c00036_gnlPro.. (original name was: gnl|Prokka|ADLKOMBC_36); c00037_gnlPro.. (original name was: gnl|Prokka|ADLKOMBC_37); c00039_gnlPro.. (original name was: gnl|Prokka|ADLKOMBC_39); c00040_gnlPro.. (original name was: gnl|Prokka|ADLKOMBC_40); c00041_gnlPro.. (original name was: gnl|Prokka|ADLKOMBC_41); c00042_gnlPro.. (original name was: gnl|Prokka|ADLKOMBC_42); c00043_gnlPro.. (original name was: gnl|Prokka|ADLKOMBC_43); c00044_gnlPro.. (original name was: gnl|Prokka|ADLKOMBC_44); c00045_gnlPro.. (original name was: gnl|Prokka|ADLKOMBC_45); c00046_gnlPro.. (original name was: gnl|Prokka|ADLKOMBC_46); c00047_gnlPro.. (original name was: gnl|Prokka|ADLKOMBC_47); c00048_gnlPro.. (original name was: gnl|Prokka|ADLKOMBC_48); c00050_gnlPro.. (original name was: gnl|Prokka|ADLKOMBC_50); c00051_gnlPro.. (original name was: gnl|Prokka|ADLKOMBC_51); c00052_gnlPro.. (original name was: gnl|Prokka|ADLKOMBC_52); c00053_gnlPro.. (original name was: gnl|Prokka|ADLKOMBC_53); c00054_gnlPro.. (original name was: gnl|Prokka|ADLKOMBC_54); c00055_gnlPro.. (original name was: gnl|Prokka|ADLKOMBC_55); c00056_gnlPro.. (original name was: gnl|Prokka|ADLKOMBC_56); c00057_gnlPro.. (original name was: gnl|Prokka|ADLKOMBC_57); c00058_gnlPro.. (original name was: gnl|Prokka|ADLKOMBC_58); c00059_gnlPro.. (original name was: gnl|Prokka|ADLKOMBC_59); c00060_gnlPro.. (original name was: gnl|Prokka|ADLKOMBC_60); c00061_gnlPro.. (original name was: gnl|Prokka|ADLKOMBC_61); c00062_gnlPro.. (original name was: gnl|Prokka|ADLKOMBC_62); c00063_gnlPro.. (original name was: gnl|Prokka|ADLKOMBC_63); c00064_gnlPro.. (original name was: gnl|Prokka|ADLKOMBC_64); c00065_gnlPro.. (original name was: gnl|Prokka|ADLKOMBC_65); c00066_gnlPro.. (original name was: gnl|Prokka|ADLKOMBC_66); c00067_gnlPro.. (original name was: gnl|Prokka|ADLKOMBC_67); c00068_gnlPro.. (original name was: gnl|Prokka|ADLKOMBC_68); c00069_gnlPro.. (original name was: gnl|Prokka|ADLKOMBC_69); c00070_gnlPro.. (original name was: gnl|Prokka|ADLKOMBC_70); c00071_gnlPro.. (original name was: gnl|Prokka|ADLKOMBC_71); c00072_gnlPro.. (original name was: gnl|Prokka|ADLKOMBC_72); c00073_gnlPro.. (original name was: gnl|Prokka|ADLKOMBC_73); c00074_gnlPro.. (original name was: gnl|Prokka|ADLKOMBC_74); c00075_gnlPro.. (original name was: gnl|Prokka|ADLKOMBC_75); c00076_gnlPro.. (original name was: gnl|Prokka|ADLKOMBC_76); c00077_gnlPro.. (original name was: gnl|Prokka|ADLKOMBC_77); c00078_gnlPro.. (original name was: gnl|Prokka|ADLKOMBC_78); c00079_gnlPro.. (original name was: gnl|Prokka|ADLKOMBC_79); c00080_gnlPro.. (original name was: gnl|Prokka|ADLKOMBC_80); c00081_gnlPro.. (original name was: gnl|Prokka|ADLKOMBC_81); c00082_gnlPro.. (original name was: gnl|Prokka|ADLKOMBC_82); c00083_gnlPro.. (original name was: gnl|Prokka|ADLKOMBC_83); c00084_gnlPro.. (original name was: gnl|Prokka|ADLKOMBC_84); c00085_gnlPro.. (original name was: gnl|Prokka|ADLKOMBC_85); c00086_gnlPro.. (original name was: gnl|Prokka|ADLKOMBC_86); c00087_gnlPro.. (original name was: gnl|Prokka|ADLKOMBC_87); c00088_gnlPro.. (original name was: gnl|Prokka|ADLKOMBC_88); c00089_gnlPro.. (original name was: gnl|Prokka|ADLKOMBC_89); c00090_gnlPro.. (original name was: gnl|Prokka|ADLKOMBC_90); c00091_gnlPro.. (original name was: gnl|Prokka|ADLKOMBC_91); c00092_gnlPro.. (original name was: gnl|Prokka|ADLKOMBC_92); c00093_gnlPro.. (original name was: gnl|Prokka|ADLKOMBC_93); c00094_gnlPro.. (original name was: gnl|Prokka|ADLKOMBC_94); c00095_gnlPro.. (original name was: gnl|Prokka|ADLKOMBC_95); c00096_gnlPro.. (original name was: gnl|Prokka|ADLKOMBC_96)

Compact view

c00006_gnlPro.. - Region 1 - Pyruvate2acetate-formate

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Location: 63,573 - 86,548 nt. (total: 22,976 nt) Show pHMM detection rules used

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

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c00014_gnlPro.. - Region 1 - Fumarate2succinate

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Location: 2,582 - 26,052 nt. (total: 23,471 nt) Show pHMM detection rules used

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

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transport-related genes

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c00016_gnlPro.. - Region 1 - Rnf_complex

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Location: 28,776 - 53,836 nt. (total: 25,061 nt) Show pHMM detection rules used

Rnf_complex: (Complex1_51K and minimum(5, [FMN_bind, FeS, Fer4, Fer4_9, NQR2_RnfD_RnfE, Rnf-Nqr, RnfC_N, SLBB]))

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core biosynthetic genes

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transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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c00029_gnlPro.. - Region 1 - TPP_AA_metabolism

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Location: 6,411 - 32,333 nt. (total: 25,923 nt) Show pHMM detection rules used

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

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core biosynthetic genes

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regulatory genes

resistance genes

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KnownClusterBlast

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No matches found.

c00038_gnlPro.. - Region 1 - OD_unknown

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Location: 1 - 23,037 nt. (total: 23,037 nt) Show pHMM detection rules used

Region on contig edge.

OD_unknown: (minimum(1, [PFOR_II, POR, POR_N]) and minimum(2, [CoA_binding, CoA_binding_2, Ligase_CoA, PTAC, Succ_CoA_lig]) and not (Gly_radical_scatole or Gly_radical or Gly_430_pcre or Gly_8-9_TMA))

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

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KnownClusterBlast

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No matches found.

c00049_gnlPro.. - Region 1 - succinate2propionate

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Location: 1,098 - 25,625 nt. (total: 24,528 nt) Show pHMM detection rules used

succinate2propionate: (minimum(4, [AcetylCoA_hyd_C, AcetylCoA_hydro, B12-binding, Biotin_lipoyl, Glyoxalase_4, HMGL-like, MM_CoA_mutase, MeaB, OAD_beta, OAD_gamma, PYC_OADA]) and minimum(1, [CT_Btheta, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, CT_Vparvula]) and not Cytidylate_kin)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

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electron transport genes

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Gene details

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KnownClusterBlast

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