GCA_948761195.1 - 8 region(s)

Identified primary metabolite regions

c00001_gnlPro.. (original name was: gnl|Prokka|PCAOJOHL_1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 1.1	Pyruvate2acetate-formate	SCFA	43,633	66,608	Pyruvate to acetate-formate E. coli	PFL_acetate	100%

c00005_gnlPro.. (original name was: gnl|Prokka|PCAOJOHL_5)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 5.1	Fumarate2succinate	SCFA	76,913	100,377	Fumarate to succinate B. thetaiotaomicron	SUC	100%

c00012_gnlPro.. (original name was: gnl|Prokka|PCAOJOHL_12)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 12.1	TPP_fatty_acids	Putative	1	14,946

c00017_gnlPro.. (original name was: gnl|Prokka|PCAOJOHL_17)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 17.1	Arginine2putrescine	Aliphatic_amine	1	25,734

c00021_gnlPro.. (original name was: gnl|Prokka|PCAOJOHL_21)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 21.1	TPP_AA_metabolism	Putative	45,482	63,369

c00023_gnlPro.. (original name was: gnl|Prokka|PCAOJOHL_23)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 23.1	Rnf_complex	E-MGC	28,257	53,317	Rnf complex C. sporogenes	RNF	83%

c00029_gnlPro.. (original name was: gnl|Prokka|PCAOJOHL_29)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 29.1	succinate2propionate	SCFA	8,173	32,708	Succinate to propionate B. theta	PRO	50%

c00045_gnlPro.. (original name was: gnl|Prokka|PCAOJOHL_45)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 45.1	OD_unknown	Putative	15,857	38,979

No primary metabolite regions were found in these records:: c00002_gnlPro.. (original name was: gnl|Prokka|PCAOJOHL_2); c00003_gnlPro.. (original name was: gnl|Prokka|PCAOJOHL_3); c00004_gnlPro.. (original name was: gnl|Prokka|PCAOJOHL_4); c00006_gnlPro.. (original name was: gnl|Prokka|PCAOJOHL_6); c00007_gnlPro.. (original name was: gnl|Prokka|PCAOJOHL_7); c00008_gnlPro.. (original name was: gnl|Prokka|PCAOJOHL_8); c00009_gnlPro.. (original name was: gnl|Prokka|PCAOJOHL_9); c00010_gnlPro.. (original name was: gnl|Prokka|PCAOJOHL_10); c00011_gnlPro.. (original name was: gnl|Prokka|PCAOJOHL_11); c00013_gnlPro.. (original name was: gnl|Prokka|PCAOJOHL_13); c00014_gnlPro.. (original name was: gnl|Prokka|PCAOJOHL_14); c00015_gnlPro.. (original name was: gnl|Prokka|PCAOJOHL_15); c00016_gnlPro.. (original name was: gnl|Prokka|PCAOJOHL_16); c00018_gnlPro.. (original name was: gnl|Prokka|PCAOJOHL_18); c00019_gnlPro.. (original name was: gnl|Prokka|PCAOJOHL_19); c00020_gnlPro.. (original name was: gnl|Prokka|PCAOJOHL_20); c00022_gnlPro.. (original name was: gnl|Prokka|PCAOJOHL_22); c00024_gnlPro.. (original name was: gnl|Prokka|PCAOJOHL_24); c00025_gnlPro.. (original name was: gnl|Prokka|PCAOJOHL_25); c00026_gnlPro.. (original name was: gnl|Prokka|PCAOJOHL_26); c00027_gnlPro.. (original name was: gnl|Prokka|PCAOJOHL_27); c00028_gnlPro.. (original name was: gnl|Prokka|PCAOJOHL_28); c00030_gnlPro.. (original name was: gnl|Prokka|PCAOJOHL_30); c00031_gnlPro.. (original name was: gnl|Prokka|PCAOJOHL_31); c00032_gnlPro.. (original name was: gnl|Prokka|PCAOJOHL_32); c00033_gnlPro.. (original name was: gnl|Prokka|PCAOJOHL_33); c00034_gnlPro.. (original name was: gnl|Prokka|PCAOJOHL_34); c00035_gnlPro.. (original name was: gnl|Prokka|PCAOJOHL_35); c00036_gnlPro.. (original name was: gnl|Prokka|PCAOJOHL_36); c00037_gnlPro.. (original name was: gnl|Prokka|PCAOJOHL_37); c00038_gnlPro.. (original name was: gnl|Prokka|PCAOJOHL_38); c00039_gnlPro.. (original name was: gnl|Prokka|PCAOJOHL_39); c00040_gnlPro.. (original name was: gnl|Prokka|PCAOJOHL_40); c00041_gnlPro.. (original name was: gnl|Prokka|PCAOJOHL_41); c00042_gnlPro.. (original name was: gnl|Prokka|PCAOJOHL_42); c00043_gnlPro.. (original name was: gnl|Prokka|PCAOJOHL_43); c00044_gnlPro.. (original name was: gnl|Prokka|PCAOJOHL_44); c00046_gnlPro.. (original name was: gnl|Prokka|PCAOJOHL_46); c00047_gnlPro.. (original name was: gnl|Prokka|PCAOJOHL_47); c00048_gnlPro.. (original name was: gnl|Prokka|PCAOJOHL_48); c00049_gnlPro.. (original name was: gnl|Prokka|PCAOJOHL_49); c00050_gnlPro.. (original name was: gnl|Prokka|PCAOJOHL_50); c00051_gnlPro.. (original name was: gnl|Prokka|PCAOJOHL_51); c00052_gnlPro.. (original name was: gnl|Prokka|PCAOJOHL_52); c00053_gnlPro.. (original name was: gnl|Prokka|PCAOJOHL_53); c00054_gnlPro.. (original name was: gnl|Prokka|PCAOJOHL_54); c00055_gnlPro.. (original name was: gnl|Prokka|PCAOJOHL_55); c00056_gnlPro.. (original name was: gnl|Prokka|PCAOJOHL_56); c00057_gnlPro.. (original name was: gnl|Prokka|PCAOJOHL_57); c00058_gnlPro.. (original name was: gnl|Prokka|PCAOJOHL_58); c00059_gnlPro.. (original name was: gnl|Prokka|PCAOJOHL_59); c00060_gnlPro.. (original name was: gnl|Prokka|PCAOJOHL_60); c00061_gnlPro.. (original name was: gnl|Prokka|PCAOJOHL_61); c00062_gnlPro.. (original name was: gnl|Prokka|PCAOJOHL_62); c00063_gnlPro.. (original name was: gnl|Prokka|PCAOJOHL_63); c00064_gnlPro.. (original name was: gnl|Prokka|PCAOJOHL_64); c00065_gnlPro.. (original name was: gnl|Prokka|PCAOJOHL_65); c00066_gnlPro.. (original name was: gnl|Prokka|PCAOJOHL_66); c00067_gnlPro.. (original name was: gnl|Prokka|PCAOJOHL_67); c00068_gnlPro.. (original name was: gnl|Prokka|PCAOJOHL_68); c00069_gnlPro.. (original name was: gnl|Prokka|PCAOJOHL_69); c00070_gnlPro.. (original name was: gnl|Prokka|PCAOJOHL_70); c00071_gnlPro.. (original name was: gnl|Prokka|PCAOJOHL_71); c00072_gnlPro.. (original name was: gnl|Prokka|PCAOJOHL_72); c00073_gnlPro.. (original name was: gnl|Prokka|PCAOJOHL_73); c00074_gnlPro.. (original name was: gnl|Prokka|PCAOJOHL_74); c00075_gnlPro.. (original name was: gnl|Prokka|PCAOJOHL_75); c00076_gnlPro.. (original name was: gnl|Prokka|PCAOJOHL_76); c00077_gnlPro.. (original name was: gnl|Prokka|PCAOJOHL_77); c00078_gnlPro.. (original name was: gnl|Prokka|PCAOJOHL_78); c00079_gnlPro.. (original name was: gnl|Prokka|PCAOJOHL_79); c00080_gnlPro.. (original name was: gnl|Prokka|PCAOJOHL_80); c00081_gnlPro.. (original name was: gnl|Prokka|PCAOJOHL_81); c00082_gnlPro.. (original name was: gnl|Prokka|PCAOJOHL_82); c00083_gnlPro.. (original name was: gnl|Prokka|PCAOJOHL_83); c00084_gnlPro.. (original name was: gnl|Prokka|PCAOJOHL_84); c00085_gnlPro.. (original name was: gnl|Prokka|PCAOJOHL_85); c00086_gnlPro.. (original name was: gnl|Prokka|PCAOJOHL_86); c00087_gnlPro.. (original name was: gnl|Prokka|PCAOJOHL_87); c00088_gnlPro.. (original name was: gnl|Prokka|PCAOJOHL_88); c00089_gnlPro.. (original name was: gnl|Prokka|PCAOJOHL_89); c00090_gnlPro.. (original name was: gnl|Prokka|PCAOJOHL_90); c00091_gnlPro.. (original name was: gnl|Prokka|PCAOJOHL_91); c00092_gnlPro.. (original name was: gnl|Prokka|PCAOJOHL_92); c00093_gnlPro.. (original name was: gnl|Prokka|PCAOJOHL_93); c00094_gnlPro.. (original name was: gnl|Prokka|PCAOJOHL_94); c00095_gnlPro.. (original name was: gnl|Prokka|PCAOJOHL_95); c00096_gnlPro.. (original name was: gnl|Prokka|PCAOJOHL_96); c00097_gnlPro.. (original name was: gnl|Prokka|PCAOJOHL_97); c00098_gnlPro.. (original name was: gnl|Prokka|PCAOJOHL_98); c00099_gnlPro.. (original name was: gnl|Prokka|PCAOJOHL_99); c00100_gnlPro.. (original name was: gnl|Prokka|PCAOJOHL_100); c00101_gnlPro.. (original name was: gnl|Prokka|PCAOJOHL_101); c00102_gnlPro.. (original name was: gnl|Prokka|PCAOJOHL_102); c00103_gnlPro.. (original name was: gnl|Prokka|PCAOJOHL_103); c00104_gnlPro.. (original name was: gnl|Prokka|PCAOJOHL_104); c00105_gnlPro.. (original name was: gnl|Prokka|PCAOJOHL_105); c00106_gnlPro.. (original name was: gnl|Prokka|PCAOJOHL_106); c00107_gnlPro.. (original name was: gnl|Prokka|PCAOJOHL_107); c00108_gnlPro.. (original name was: gnl|Prokka|PCAOJOHL_108); c00109_gnlPro.. (original name was: gnl|Prokka|PCAOJOHL_109); c00110_gnlPro.. (original name was: gnl|Prokka|PCAOJOHL_110); c00111_gnlPro.. (original name was: gnl|Prokka|PCAOJOHL_111); c00112_gnlPro.. (original name was: gnl|Prokka|PCAOJOHL_112); c00113_gnlPro.. (original name was: gnl|Prokka|PCAOJOHL_113); c00114_gnlPro.. (original name was: gnl|Prokka|PCAOJOHL_114); c00115_gnlPro.. (original name was: gnl|Prokka|PCAOJOHL_115); c00116_gnlPro.. (original name was: gnl|Prokka|PCAOJOHL_116); c00117_gnlPro.. (original name was: gnl|Prokka|PCAOJOHL_117); c00118_gnlPro.. (original name was: gnl|Prokka|PCAOJOHL_118); c00119_gnlPro.. (original name was: gnl|Prokka|PCAOJOHL_119); c00120_gnlPro.. (original name was: gnl|Prokka|PCAOJOHL_120); c00121_gnlPro.. (original name was: gnl|Prokka|PCAOJOHL_121); c00122_gnlPro.. (original name was: gnl|Prokka|PCAOJOHL_122); c00123_gnlPro.. (original name was: gnl|Prokka|PCAOJOHL_123); c00124_gnlPro.. (original name was: gnl|Prokka|PCAOJOHL_124); c00125_gnlPro.. (original name was: gnl|Prokka|PCAOJOHL_125); c00126_gnlPro.. (original name was: gnl|Prokka|PCAOJOHL_126); c00127_gnlPro.. (original name was: gnl|Prokka|PCAOJOHL_127); c00128_gnlPro.. (original name was: gnl|Prokka|PCAOJOHL_128); c00129_gnlPro.. (original name was: gnl|Prokka|PCAOJOHL_129); c00130_gnlPro.. (original name was: gnl|Prokka|PCAOJOHL_130); c00131_gnlPro.. (original name was: gnl|Prokka|PCAOJOHL_131); c00132_gnlPro.. (original name was: gnl|Prokka|PCAOJOHL_132); c00133_gnlPro.. (original name was: gnl|Prokka|PCAOJOHL_133); c00134_gnlPro.. (original name was: gnl|Prokka|PCAOJOHL_134); c00135_gnlPro.. (original name was: gnl|Prokka|PCAOJOHL_135); c00136_gnlPro.. (original name was: gnl|Prokka|PCAOJOHL_136); c00137_gnlPro.. (original name was: gnl|Prokka|PCAOJOHL_137); c00138_gnlPro.. (original name was: gnl|Prokka|PCAOJOHL_138); c00139_gnlPro.. (original name was: gnl|Prokka|PCAOJOHL_139); c00140_gnlPro.. (original name was: gnl|Prokka|PCAOJOHL_140); c00141_gnlPro.. (original name was: gnl|Prokka|PCAOJOHL_141); c00142_gnlPro.. (original name was: gnl|Prokka|PCAOJOHL_142); c00143_gnlPro.. (original name was: gnl|Prokka|PCAOJOHL_143); c00144_gnlPro.. (original name was: gnl|Prokka|PCAOJOHL_144); c00145_gnlPro.. (original name was: gnl|Prokka|PCAOJOHL_145); c00146_gnlPro.. (original name was: gnl|Prokka|PCAOJOHL_146); c00147_gnlPro.. (original name was: gnl|Prokka|PCAOJOHL_147); c00148_gnlPro.. (original name was: gnl|Prokka|PCAOJOHL_148); c00149_gnlPro.. (original name was: gnl|Prokka|PCAOJOHL_149); c00150_gnlPro.. (original name was: gnl|Prokka|PCAOJOHL_150); c00151_gnlPro.. (original name was: gnl|Prokka|PCAOJOHL_151); c00152_gnlPro.. (original name was: gnl|Prokka|PCAOJOHL_152)

Compact view

c00001_gnlPro.. - Region 1 - Pyruvate2acetate-formate

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Location: 43,633 - 66,608 nt. (total: 22,976 nt) Show pHMM detection rules used

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

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c00005_gnlPro.. - Region 1 - Fumarate2succinate

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Location: 76,913 - 100,377 nt. (total: 23,465 nt) Show pHMM detection rules used

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

Legend:

core biosynthetic genes

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transport-related genes

regulatory genes

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c00012_gnlPro.. - Region 1 - TPP_fatty_acids

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Location: 1 - 14,946 nt. (total: 14,946 nt) Show pHMM detection rules used

Region on contig edge.

TPP_fatty_acids: (TPP_enzyme_C and (minimum(2, [ACD1_car, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, Butyrate_kinase, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_2_CAF, CoA_trans_6_Glutaconate, E1_dh, ECH_1, ECH_2, HBT, HBT_2, HCDH, HpaB, Ketoacyl-synt_C, Thiolase_C, Thiolase_N, adh_short, adh_short_C2]) or FA_synthesis) and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and not (POR or POR_N))

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core biosynthetic genes

additional biosynthetic genes

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regulatory genes

resistance genes

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No matches found.

c00017_gnlPro.. - Region 1 - Arginine2putrescine

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Location: 1 - 25,734 nt. (total: 25,734 nt) Show pHMM detection rules used

Region on contig edge.

Arginine2putrescine: (minimum(3, [AdoMet_dc, Amidinotransf, Arginase, OKR_DC_1, OKR_DC_1_7_arginine, OTCace]) or ((OKR_DC_1_5_ornithine or OKR_DC_1 or Orn_Arg_deC_N) and minimum(1, [Arginase, OTCace, OTCace_N, PAD_porph])))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

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No matches found.

c00021_gnlPro.. - Region 1 - TPP_AA_metabolism

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Location: 45,482 - 63,369 nt. (total: 17,888 nt) Show pHMM detection rules used

Region on contig edge.

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

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core biosynthetic genes

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regulatory genes

resistance genes

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c00023_gnlPro.. - Region 1 - Rnf_complex

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Location: 28,257 - 53,317 nt. (total: 25,061 nt) Show pHMM detection rules used

Rnf_complex: (Complex1_51K and minimum(5, [FMN_bind, FeS, Fer4, Fer4_9, NQR2_RnfD_RnfE, Rnf-Nqr, RnfC_N, SLBB]))

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c00029_gnlPro.. - Region 1 - succinate2propionate

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Location: 8,173 - 32,708 nt. (total: 24,536 nt) Show pHMM detection rules used

succinate2propionate: (minimum(4, [AcetylCoA_hyd_C, AcetylCoA_hydro, B12-binding, Biotin_lipoyl, Glyoxalase_4, HMGL-like, MM_CoA_mutase, MeaB, OAD_beta, OAD_gamma, PYC_OADA]) and minimum(1, [CT_Btheta, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, CT_Vparvula]) and not Cytidylate_kin)

Legend:

core biosynthetic genes

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c00045_gnlPro.. - Region 1 - OD_unknown

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Location: 15,857 - 38,979 nt. (total: 23,123 nt) Show pHMM detection rules used

Region on contig edge.

OD_unknown: (minimum(1, [PFOR_II, POR, POR_N]) and minimum(2, [CoA_binding, CoA_binding_2, Ligase_CoA, PTAC, Succ_CoA_lig]) and not (Gly_radical_scatole or Gly_radical or Gly_430_pcre or Gly_8-9_TMA))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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Gene details

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