GCA_948796565.1 - 4 region(s)

Identified primary metabolite regions

c00004_gnlPro.. (original name was: gnl|Prokka|JKOJAHPC_4)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 4.1	Pyruvate2acetate-formate	SCFA	69,592	88,779	Pyruvate to acetate and formate C. acetobutylicum	PFL_acetate	100%

c00007_gnlPro.. (original name was: gnl|Prokka|JKOJAHPC_7)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 7.1	Glycine_cleavage	Other	59,029	81,377	Glycine cleavage C. sticklandii	GLY	60%

c00014_gnlPro.. (original name was: gnl|Prokka|JKOJAHPC_14)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 14.1	TPP_fatty_acids	Putative	1	22,861	Succinate to propionate A. sp. KLE1797	SUC	57%

c00047_gnlPro.. (original name was: gnl|Prokka|JKOJAHPC_47)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 47.1	Fumarate2succinate	SCFA	1	13,222	Fumarate to succinate B. thetaiotaomicron	SUC	66%

Compact view

c00004_gnlPro.. - Region 1 - Pyruvate2acetate-formate

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Location: 69,592 - 88,779 nt. (total: 19,188 nt) Show pHMM detection rules used

Region on contig edge.

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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c00007_gnlPro.. - Region 1 - Glycine_cleavage

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Location: 59,029 - 81,377 nt. (total: 22,349 nt) Show pHMM detection rules used

Region on contig edge.

Glycine_cleavage: (minimum(2, [Aminotran_5, GCV_H, GCV_T, GDC-P, SoxG]) and GCV_H and GCV_T_C)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

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c00014_gnlPro.. - Region 1 - TPP_fatty_acids

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Location: 1 - 22,861 nt. (total: 22,861 nt) Show pHMM detection rules used

Region on contig edge.

TPP_fatty_acids: (TPP_enzyme_C and (minimum(2, [ACD1_car, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, Butyrate_kinase, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_2_CAF, CoA_trans_6_Glutaconate, E1_dh, ECH_1, ECH_2, HBT, HBT_2, HCDH, HpaB, Ketoacyl-synt_C, Thiolase_C, Thiolase_N, adh_short, adh_short_C2]) or FA_synthesis) and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and not (POR or POR_N))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

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c00047_gnlPro.. - Region 1 - Fumarate2succinate

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Location: 1 - 13,222 nt. (total: 13,222 nt) Show pHMM detection rules used

Region on contig edge.

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters