GCA_948827375.1 - 5 region(s)

Identified primary metabolite regions

c00005_gnlPro.. (original name was: gnl|Prokka|HNDPDDBC_5)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 5.1	Rnf_complex	E-MGC	18,973	44,060	Rnf complex C. sporogenes	RNF	83%

c00017_gnlPro.. (original name was: gnl|Prokka|HNDPDDBC_17)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 17.1	Pyruvate2acetate-formate	SCFA	36,849	59,828	Pyruvate to acetate-formate E. coli	PFL_acetate	100%

c00027_gnlPro.. (original name was: gnl|Prokka|HNDPDDBC_27)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 27.1	TPP_AA_metabolism	Putative	39,684	65,666

c00029_gnlPro.. (original name was: gnl|Prokka|HNDPDDBC_29)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 29.1	porA	SCFA	11,523	34,368	porA C. sporogenes	POR	60%

c00060_gnlPro.. (original name was: gnl|Prokka|HNDPDDBC_60)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 60.1	Fumarate2succinate	SCFA	1	12,535	Fumarate to succinate B. thetaiotaomicron	SUC	100%

No primary metabolite regions were found in these records:: c00001_gnlPro.. (original name was: gnl|Prokka|HNDPDDBC_1); c00002_gnlPro.. (original name was: gnl|Prokka|HNDPDDBC_2); c00003_gnlPro.. (original name was: gnl|Prokka|HNDPDDBC_3); c00004_gnlPro.. (original name was: gnl|Prokka|HNDPDDBC_4); c00006_gnlPro.. (original name was: gnl|Prokka|HNDPDDBC_6); c00007_gnlPro.. (original name was: gnl|Prokka|HNDPDDBC_7); c00008_gnlPro.. (original name was: gnl|Prokka|HNDPDDBC_8); c00009_gnlPro.. (original name was: gnl|Prokka|HNDPDDBC_9); c00010_gnlPro.. (original name was: gnl|Prokka|HNDPDDBC_10); c00011_gnlPro.. (original name was: gnl|Prokka|HNDPDDBC_11); c00012_gnlPro.. (original name was: gnl|Prokka|HNDPDDBC_12); c00013_gnlPro.. (original name was: gnl|Prokka|HNDPDDBC_13); c00014_gnlPro.. (original name was: gnl|Prokka|HNDPDDBC_14); c00015_gnlPro.. (original name was: gnl|Prokka|HNDPDDBC_15); c00016_gnlPro.. (original name was: gnl|Prokka|HNDPDDBC_16); c00018_gnlPro.. (original name was: gnl|Prokka|HNDPDDBC_18); c00019_gnlPro.. (original name was: gnl|Prokka|HNDPDDBC_19); c00020_gnlPro.. (original name was: gnl|Prokka|HNDPDDBC_20); c00021_gnlPro.. (original name was: gnl|Prokka|HNDPDDBC_21); c00022_gnlPro.. (original name was: gnl|Prokka|HNDPDDBC_22); c00023_gnlPro.. (original name was: gnl|Prokka|HNDPDDBC_23); c00024_gnlPro.. (original name was: gnl|Prokka|HNDPDDBC_24); c00025_gnlPro.. (original name was: gnl|Prokka|HNDPDDBC_25); c00026_gnlPro.. (original name was: gnl|Prokka|HNDPDDBC_26); c00028_gnlPro.. (original name was: gnl|Prokka|HNDPDDBC_28); c00030_gnlPro.. (original name was: gnl|Prokka|HNDPDDBC_30); c00031_gnlPro.. (original name was: gnl|Prokka|HNDPDDBC_31); c00032_gnlPro.. (original name was: gnl|Prokka|HNDPDDBC_32); c00033_gnlPro.. (original name was: gnl|Prokka|HNDPDDBC_33); c00034_gnlPro.. (original name was: gnl|Prokka|HNDPDDBC_34); c00035_gnlPro.. (original name was: gnl|Prokka|HNDPDDBC_35); c00036_gnlPro.. (original name was: gnl|Prokka|HNDPDDBC_36); c00037_gnlPro.. (original name was: gnl|Prokka|HNDPDDBC_37); c00038_gnlPro.. (original name was: gnl|Prokka|HNDPDDBC_38); c00039_gnlPro.. (original name was: gnl|Prokka|HNDPDDBC_39); c00040_gnlPro.. (original name was: gnl|Prokka|HNDPDDBC_40); c00041_gnlPro.. (original name was: gnl|Prokka|HNDPDDBC_41); c00042_gnlPro.. (original name was: gnl|Prokka|HNDPDDBC_42); c00043_gnlPro.. (original name was: gnl|Prokka|HNDPDDBC_43); c00044_gnlPro.. (original name was: gnl|Prokka|HNDPDDBC_44); c00045_gnlPro.. (original name was: gnl|Prokka|HNDPDDBC_45); c00046_gnlPro.. (original name was: gnl|Prokka|HNDPDDBC_46); c00047_gnlPro.. (original name was: gnl|Prokka|HNDPDDBC_47); c00048_gnlPro.. (original name was: gnl|Prokka|HNDPDDBC_48); c00049_gnlPro.. (original name was: gnl|Prokka|HNDPDDBC_49); c00050_gnlPro.. (original name was: gnl|Prokka|HNDPDDBC_50); c00051_gnlPro.. (original name was: gnl|Prokka|HNDPDDBC_51); c00052_gnlPro.. (original name was: gnl|Prokka|HNDPDDBC_52); c00053_gnlPro.. (original name was: gnl|Prokka|HNDPDDBC_53); c00054_gnlPro.. (original name was: gnl|Prokka|HNDPDDBC_54); c00055_gnlPro.. (original name was: gnl|Prokka|HNDPDDBC_55); c00056_gnlPro.. (original name was: gnl|Prokka|HNDPDDBC_56); c00057_gnlPro.. (original name was: gnl|Prokka|HNDPDDBC_57); c00058_gnlPro.. (original name was: gnl|Prokka|HNDPDDBC_58); c00059_gnlPro.. (original name was: gnl|Prokka|HNDPDDBC_59); c00061_gnlPro.. (original name was: gnl|Prokka|HNDPDDBC_61); c00062_gnlPro.. (original name was: gnl|Prokka|HNDPDDBC_62); c00063_gnlPro.. (original name was: gnl|Prokka|HNDPDDBC_63); c00064_gnlPro.. (original name was: gnl|Prokka|HNDPDDBC_64); c00065_gnlPro.. (original name was: gnl|Prokka|HNDPDDBC_65); c00066_gnlPro.. (original name was: gnl|Prokka|HNDPDDBC_66); c00067_gnlPro.. (original name was: gnl|Prokka|HNDPDDBC_67); c00068_gnlPro.. (original name was: gnl|Prokka|HNDPDDBC_68); c00069_gnlPro.. (original name was: gnl|Prokka|HNDPDDBC_69); c00070_gnlPro.. (original name was: gnl|Prokka|HNDPDDBC_70); c00071_gnlPro.. (original name was: gnl|Prokka|HNDPDDBC_71); c00072_gnlPro.. (original name was: gnl|Prokka|HNDPDDBC_72); c00073_gnlPro.. (original name was: gnl|Prokka|HNDPDDBC_73); c00074_gnlPro.. (original name was: gnl|Prokka|HNDPDDBC_74); c00075_gnlPro.. (original name was: gnl|Prokka|HNDPDDBC_75); c00076_gnlPro.. (original name was: gnl|Prokka|HNDPDDBC_76); c00077_gnlPro.. (original name was: gnl|Prokka|HNDPDDBC_77); c00078_gnlPro.. (original name was: gnl|Prokka|HNDPDDBC_78); c00079_gnlPro.. (original name was: gnl|Prokka|HNDPDDBC_79); c00080_gnlPro.. (original name was: gnl|Prokka|HNDPDDBC_80)

Compact view

c00005_gnlPro.. - Region 1 - Rnf_complex

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Location: 18,973 - 44,060 nt. (total: 25,088 nt) Show pHMM detection rules used

Rnf_complex: (Complex1_51K and minimum(5, [FMN_bind, FeS, Fer4, Fer4_9, NQR2_RnfD_RnfE, Rnf-Nqr, RnfC_N, SLBB]))

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

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KnownClusterBlast

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c00017_gnlPro.. - Region 1 - Pyruvate2acetate-formate

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Location: 36,849 - 59,828 nt. (total: 22,980 nt) Show pHMM detection rules used

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

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c00027_gnlPro.. - Region 1 - TPP_AA_metabolism

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Location: 39,684 - 65,666 nt. (total: 25,983 nt) Show pHMM detection rules used

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

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core biosynthetic genes

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transport-related genes

regulatory genes

resistance genes

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KnownClusterBlast

Similar known gene clusters

No matches found.

c00029_gnlPro.. - Region 1 - porA

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Location: 11,523 - 34,368 nt. (total: 22,846 nt) Show pHMM detection rules used

porA: (Fer4_7 and TPP_enzyme_C and POR and POR_N and PFOR_II and not (EKR or Fer4_16))

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

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KnownClusterBlast

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c00060_gnlPro.. - Region 1 - Fumarate2succinate

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Location: 1 - 12,535 nt. (total: 12,535 nt) Show pHMM detection rules used

Region on contig edge.

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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Gene details

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KnownClusterBlast

Similar known gene clusters