GCA_948937565.1 - 5 region(s)

Identified primary metabolite regions

c00003_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_3)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 3.1	Rnf_complex	E-MGC	15,364	40,451	Rnf complex C. sporogenes	RNF	83%

c00006_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_6)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 6.1	TPP_AA_metabolism	Putative	4,652	30,637

c00023_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_23)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 23.1	Fumarate2succinate	SCFA	42,568	59,595	Fumarate to succinate B. thetaiotaomicron	SUC	100%

c00053_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_53)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 53.1	Pyruvate2acetate-formate	SCFA	24,542	39,248	Pyruvate to acetate-formate E. coli	PFL_acetate	100%

c00118_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_118)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 118.1	PFOR_II_pathway	SCFA	1	15,977	PFOR II pathway B. thetaiotaomicron	PFORII	100%

No primary metabolite regions were found in these records:: c00001_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_1); c00002_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_2); c00004_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_4); c00005_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_5); c00007_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_7); c00008_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_8); c00009_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_9); c00010_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_10); c00011_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_11); c00012_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_12); c00013_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_13); c00014_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_14); c00015_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_15); c00016_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_16); c00017_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_17); c00018_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_18); c00019_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_19); c00020_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_20); c00021_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_21); c00022_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_22); c00024_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_24); c00025_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_25); c00026_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_26); c00027_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_27); c00028_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_28); c00029_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_29); c00030_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_30); c00031_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_31); c00032_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_32); c00033_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_33); c00034_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_34); c00035_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_35); c00036_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_36); c00037_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_37); c00038_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_38); c00039_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_39); c00040_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_40); c00041_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_41); c00042_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_42); c00043_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_43); c00044_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_44); c00045_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_45); c00046_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_46); c00047_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_47); c00048_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_48); c00049_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_49); c00050_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_50); c00051_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_51); c00052_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_52); c00054_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_54); c00055_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_55); c00056_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_56); c00057_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_57); c00058_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_58); c00059_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_59); c00060_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_60); c00061_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_61); c00062_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_62); c00063_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_63); c00064_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_64); c00065_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_65); c00066_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_66); c00067_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_67); c00068_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_68); c00069_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_69); c00070_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_70); c00071_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_71); c00072_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_72); c00073_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_73); c00074_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_74); c00075_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_75); c00076_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_76); c00077_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_77); c00078_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_78); c00079_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_79); c00080_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_80); c00081_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_81); c00082_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_82); c00083_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_83); c00084_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_84); c00085_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_85); c00086_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_86); c00087_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_87); c00088_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_88); c00089_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_89); c00090_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_90); c00091_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_91); c00092_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_92); c00093_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_93); c00094_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_94); c00095_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_95); c00096_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_96); c00097_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_97); c00098_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_98); c00099_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_99); c00100_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_100); c00101_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_101); c00102_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_102); c00103_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_103); c00104_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_104); c00105_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_105); c00106_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_106); c00107_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_107); c00108_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_108); c00109_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_109); c00110_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_110); c00111_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_111); c00112_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_112); c00113_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_113); c00114_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_114); c00115_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_115); c00116_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_116); c00117_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_117); c00119_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_119); c00120_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_120); c00121_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_121); c00122_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_122); c00123_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_123); c00124_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_124); c00125_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_125); c00126_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_126); c00127_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_127); c00128_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_128); c00129_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_129); c00130_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_130); c00131_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_131); c00132_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_132); c00133_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_133); c00134_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_134); c00135_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_135); c00136_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_136); c00137_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_137); c00138_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_138); c00139_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_139); c00140_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_140); c00141_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_141); c00142_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_142); c00143_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_143); c00144_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_144); c00145_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_145); c00146_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_146); c00147_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_147); c00148_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_148); c00149_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_149); c00150_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_150); c00151_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_151); c00152_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_152); c00153_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_153); c00154_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_154); c00155_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_155); c00156_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_156); c00157_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_157); c00158_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_158); c00159_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_159); c00160_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_160); c00161_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_161); c00162_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_162); c00163_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_163); c00164_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_164); c00165_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_165); c00166_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_166); c00167_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_167); c00168_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_168); c00169_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_169); c00170_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_170); c00171_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_171); c00172_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_172); c00173_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_173); c00174_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_174); c00175_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_175); c00176_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_176); c00177_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_177); c00178_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_178); c00179_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_179); c00180_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_180); c00181_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_181); c00182_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_182); c00183_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_183); c00184_gnlPro.. (original name was: gnl|Prokka|KLMIHPGK_184)

Compact view

c00003_gnlPro.. - Region 1 - Rnf_complex

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Location: 15,364 - 40,451 nt. (total: 25,088 nt) Show pHMM detection rules used

Rnf_complex: (Complex1_51K and minimum(5, [FMN_bind, FeS, Fer4, Fer4_9, NQR2_RnfD_RnfE, Rnf-Nqr, RnfC_N, SLBB]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

c00006_gnlPro.. - Region 1 - TPP_AA_metabolism

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Location: 4,652 - 30,637 nt. (total: 25,986 nt) Show pHMM detection rules used

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.

c00023_gnlPro.. - Region 1 - Fumarate2succinate

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Location: 42,568 - 59,595 nt. (total: 17,028 nt) Show pHMM detection rules used

Region on contig edge.

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

c00053_gnlPro.. - Region 1 - Pyruvate2acetate-formate

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Location: 24,542 - 39,248 nt. (total: 14,707 nt) Show pHMM detection rules used

Region on contig edge.

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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Gene details

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KnownClusterBlast

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c00118_gnlPro.. - Region 1 - PFOR_II_pathway

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Location: 1 - 15,977 nt. (total: 15,977 nt) Show pHMM detection rules used

Region on contig edge.

PFOR_II_pathway: cds(POR and POR_N and PFOR_II and EKR and Fer4_16 and TPP_enzyme_C)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters