GCA_948941255.1 - 6 region(s)

Identified primary metabolite regions

c00007_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_7)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 7.1	succinate2propionate	SCFA	26,276	50,984	Succinate to propionate B. theta	PRO	75%

c00009_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_9)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 9.1	Fumarate2succinate	SCFA	25,672	49,142	Fumarate to succinate B. thetaiotaomicron	SUC	100%

c00085_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_85)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 85.1	Pyruvate2acetate-formate	SCFA	2,352	15,991	Pyruvate to acetate-formate B. thetaiotaomicron	PFL_acetate	100%

c00087_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_87)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 87.1	TPP_AA_metabolism	Putative	1	14,811

c00102_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_102)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 102.1	Rnf_complex	E-MGC	1	12,942	Rnf complex C. sporogenes	RNF	50%

c00156_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_156)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 156.1	NADH_dehydrogenase_I	E-MGC	1	8,301	NADH dehydrogenase I Bacteroides sp.	NADHD	42%

No primary metabolite regions were found in these records:: c00001_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_1); c00002_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_2); c00003_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_3); c00004_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_4); c00005_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_5); c00006_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_6); c00008_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_8); c00010_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_10); c00011_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_11); c00012_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_12); c00013_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_13); c00014_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_14); c00015_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_15); c00016_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_16); c00017_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_17); c00018_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_18); c00019_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_19); c00020_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_20); c00021_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_21); c00022_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_22); c00023_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_23); c00024_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_24); c00025_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_25); c00026_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_26); c00027_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_27); c00028_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_28); c00029_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_29); c00030_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_30); c00031_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_31); c00032_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_32); c00033_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_33); c00034_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_34); c00035_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_35); c00036_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_36); c00037_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_37); c00038_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_38); c00039_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_39); c00040_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_40); c00041_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_41); c00042_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_42); c00043_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_43); c00044_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_44); c00045_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_45); c00046_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_46); c00047_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_47); c00048_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_48); c00049_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_49); c00050_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_50); c00051_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_51); c00052_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_52); c00053_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_53); c00054_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_54); c00055_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_55); c00056_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_56); c00057_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_57); c00058_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_58); c00059_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_59); c00060_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_60); c00061_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_61); c00062_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_62); c00063_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_63); c00064_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_64); c00065_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_65); c00066_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_66); c00067_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_67); c00068_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_68); c00069_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_69); c00070_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_70); c00071_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_71); c00072_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_72); c00073_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_73); c00074_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_74); c00075_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_75); c00076_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_76); c00077_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_77); c00078_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_78); c00079_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_79); c00080_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_80); c00081_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_81); c00082_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_82); c00083_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_83); c00084_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_84); c00086_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_86); c00088_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_88); c00089_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_89); c00090_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_90); c00091_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_91); c00092_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_92); c00093_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_93); c00094_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_94); c00095_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_95); c00096_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_96); c00097_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_97); c00098_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_98); c00099_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_99); c00100_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_100); c00101_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_101); c00103_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_103); c00104_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_104); c00105_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_105); c00106_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_106); c00107_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_107); c00108_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_108); c00109_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_109); c00110_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_110); c00111_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_111); c00112_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_112); c00113_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_113); c00114_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_114); c00115_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_115); c00116_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_116); c00117_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_117); c00118_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_118); c00119_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_119); c00120_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_120); c00121_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_121); c00122_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_122); c00123_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_123); c00124_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_124); c00125_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_125); c00126_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_126); c00127_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_127); c00128_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_128); c00129_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_129); c00130_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_130); c00131_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_131); c00132_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_132); c00133_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_133); c00134_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_134); c00135_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_135); c00136_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_136); c00137_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_137); c00138_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_138); c00139_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_139); c00140_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_140); c00141_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_141); c00142_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_142); c00143_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_143); c00144_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_144); c00145_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_145); c00146_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_146); c00147_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_147); c00148_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_148); c00149_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_149); c00150_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_150); c00151_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_151); c00152_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_152); c00153_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_153); c00154_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_154); c00155_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_155); c00157_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_157); c00158_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_158); c00159_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_159); c00160_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_160); c00161_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_161); c00162_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_162); c00163_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_163); c00164_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_164); c00165_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_165); c00166_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_166); c00167_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_167); c00168_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_168); c00169_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_169); c00170_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_170); c00171_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_171); c00172_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_172); c00173_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_173); c00174_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_174); c00175_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_175); c00176_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_176); c00177_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_177); c00178_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_178); c00179_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_179); c00180_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_180); c00181_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_181); c00182_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_182); c00183_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_183); c00184_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_184); c00185_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_185); c00186_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_186); c00187_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_187); c00188_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_188); c00189_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_189); c00190_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_190); c00191_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_191); c00192_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_192); c00193_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_193); c00194_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_194); c00195_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_195); c00196_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_196); c00197_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_197); c00198_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_198); c00199_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_199); c00200_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_200); c00201_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_201); c00202_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_202); c00203_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_203); c00204_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_204); c00205_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_205); c00206_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_206); c00207_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_207); c00208_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_208); c00209_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_209); c00210_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_210); c00211_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_211); c00212_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_212); c00213_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_213); c00214_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_214); c00215_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_215); c00216_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_216); c00217_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_217); c00218_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_218); c00219_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_219); c00220_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_220); c00221_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_221); c00222_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_222); c00223_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_223); c00224_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_224); c00225_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_225); c00226_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_226); c00227_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_227); c00228_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_228); c00229_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_229); c00230_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_230); c00231_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_231); c00232_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_232); c00233_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_233); c00234_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_234); c00235_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_235); c00236_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_236); c00237_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_237); c00238_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_238); c00239_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_239); c00240_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_240); c00241_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_241); c00242_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_242); c00243_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_243); c00244_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_244); c00245_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_245); c00246_gnlPro.. (original name was: gnl|Prokka|JKHBJOCE_246)

Compact view

c00007_gnlPro.. - Region 1 - succinate2propionate

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Location: 26,276 - 50,984 nt. (total: 24,709 nt) Show pHMM detection rules used

succinate2propionate: (minimum(4, [AcetylCoA_hyd_C, AcetylCoA_hydro, B12-binding, Biotin_lipoyl, Glyoxalase_4, HMGL-like, MM_CoA_mutase, MeaB, OAD_beta, OAD_gamma, PYC_OADA]) and minimum(1, [CT_Btheta, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, CT_Vparvula]) and not Cytidylate_kin)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

c00009_gnlPro.. - Region 1 - Fumarate2succinate

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Location: 25,672 - 49,142 nt. (total: 23,471 nt) Show pHMM detection rules used

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

c00085_gnlPro.. - Region 1 - Pyruvate2acetate-formate

Download region GenBank file

Location: 2,352 - 15,991 nt. (total: 13,640 nt) Show pHMM detection rules used

Region on contig edge.

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

zoom to selection

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c00087_gnlPro.. - Region 1 - TPP_AA_metabolism

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Location: 1 - 14,811 nt. (total: 14,811 nt) Show pHMM detection rules used

Region on contig edge.

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

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c00102_gnlPro.. - Region 1 - Rnf_complex

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Location: 1 - 12,942 nt. (total: 12,942 nt) Show pHMM detection rules used

Region on contig edge.

Rnf_complex: (Complex1_51K and minimum(5, [FMN_bind, FeS, Fer4, Fer4_9, NQR2_RnfD_RnfE, Rnf-Nqr, RnfC_N, SLBB]))

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c00156_gnlPro.. - Region 1 - NADH_dehydrogenase_I

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Location: 1 - 8,301 nt. (total: 8,301 nt) Show pHMM detection rules used

Region on contig edge.

NADH_dehydrogenase_I: (Oxidored_q4 and Oxidored_q6 and Complex1_30kDa and Complex1_49kDa and NADHdh and Oxidored_q3 and Oxidored_q2 and minimum(4, [Fe-2S_thioredx, Fer2_4, Fer4_7, Molybdop_Fe4S4, Molydop_binding, NADH-G_4Fe-4S_3, NADH_4Fe-4S, Proton_antipo_M, Proton_antipo_N, SLBB]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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