GCA_948979175.1 - 7 region(s)

Identified primary metabolite regions

c00003_gnlPro.. (original name was: gnl|Prokka|EPJBAJGM_3)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 3.1	PFOR_II_pathway	SCFA	95,774	119,331	PFOR II pathway B. thetaiotaomicron	PFORII	100%

c00004_gnlPro.. (original name was: gnl|Prokka|EPJBAJGM_4)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 4.1	succinate2propionate	SCFA	6,192	30,900	Succinate to propionate B. theta	PRO	75%
Region 4.2	porA	SCFA	111,906	128,260	porA C. sporogenes	POR	80%

c00010_gnlPro.. (original name was: gnl|Prokka|EPJBAJGM_10)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 10.1	NADH_dehydrogenase_I	E-MGC	5,626	35,857	NADH dehydrogenase I Bacteroides sp.	NADHD	80%

c00025_gnlPro.. (original name was: gnl|Prokka|EPJBAJGM_25)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 25.1	Fumarate2succinate	SCFA	34,017	57,487	Fumarate to succinate B. thetaiotaomicron	SUC	100%

c00052_gnlPro.. (original name was: gnl|Prokka|EPJBAJGM_52)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 52.1	TPP_AA_metabolism	Putative	8,553	30,056

c00056_gnlPro.. (original name was: gnl|Prokka|EPJBAJGM_56)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 56.1	Rnf_complex	E-MGC	1	13,846	Rnf complex C. sporogenes	RNF	66%

No primary metabolite regions were found in these records:: c00001_gnlPro.. (original name was: gnl|Prokka|EPJBAJGM_1); c00002_gnlPro.. (original name was: gnl|Prokka|EPJBAJGM_2); c00005_gnlPro.. (original name was: gnl|Prokka|EPJBAJGM_5); c00006_gnlPro.. (original name was: gnl|Prokka|EPJBAJGM_6); c00007_gnlPro.. (original name was: gnl|Prokka|EPJBAJGM_7); c00008_gnlPro.. (original name was: gnl|Prokka|EPJBAJGM_8); c00009_gnlPro.. (original name was: gnl|Prokka|EPJBAJGM_9); c00011_gnlPro.. (original name was: gnl|Prokka|EPJBAJGM_11); c00012_gnlPro.. (original name was: gnl|Prokka|EPJBAJGM_12); c00013_gnlPro.. (original name was: gnl|Prokka|EPJBAJGM_13); c00014_gnlPro.. (original name was: gnl|Prokka|EPJBAJGM_14); c00015_gnlPro.. (original name was: gnl|Prokka|EPJBAJGM_15); c00016_gnlPro.. (original name was: gnl|Prokka|EPJBAJGM_16); c00017_gnlPro.. (original name was: gnl|Prokka|EPJBAJGM_17); c00018_gnlPro.. (original name was: gnl|Prokka|EPJBAJGM_18); c00019_gnlPro.. (original name was: gnl|Prokka|EPJBAJGM_19); c00020_gnlPro.. (original name was: gnl|Prokka|EPJBAJGM_20); c00021_gnlPro.. (original name was: gnl|Prokka|EPJBAJGM_21); c00022_gnlPro.. (original name was: gnl|Prokka|EPJBAJGM_22); c00023_gnlPro.. (original name was: gnl|Prokka|EPJBAJGM_23); c00024_gnlPro.. (original name was: gnl|Prokka|EPJBAJGM_24); c00026_gnlPro.. (original name was: gnl|Prokka|EPJBAJGM_26); c00027_gnlPro.. (original name was: gnl|Prokka|EPJBAJGM_27); c00028_gnlPro.. (original name was: gnl|Prokka|EPJBAJGM_28); c00029_gnlPro.. (original name was: gnl|Prokka|EPJBAJGM_29); c00030_gnlPro.. (original name was: gnl|Prokka|EPJBAJGM_30); c00031_gnlPro.. (original name was: gnl|Prokka|EPJBAJGM_31); c00032_gnlPro.. (original name was: gnl|Prokka|EPJBAJGM_32); c00033_gnlPro.. (original name was: gnl|Prokka|EPJBAJGM_33); c00034_gnlPro.. (original name was: gnl|Prokka|EPJBAJGM_34); c00035_gnlPro.. (original name was: gnl|Prokka|EPJBAJGM_35); c00036_gnlPro.. (original name was: gnl|Prokka|EPJBAJGM_36); c00037_gnlPro.. (original name was: gnl|Prokka|EPJBAJGM_37); c00038_gnlPro.. (original name was: gnl|Prokka|EPJBAJGM_38); c00039_gnlPro.. (original name was: gnl|Prokka|EPJBAJGM_39); c00040_gnlPro.. (original name was: gnl|Prokka|EPJBAJGM_40); c00041_gnlPro.. (original name was: gnl|Prokka|EPJBAJGM_41); c00042_gnlPro.. (original name was: gnl|Prokka|EPJBAJGM_42); c00043_gnlPro.. (original name was: gnl|Prokka|EPJBAJGM_43); c00044_gnlPro.. (original name was: gnl|Prokka|EPJBAJGM_44); c00045_gnlPro.. (original name was: gnl|Prokka|EPJBAJGM_45); c00046_gnlPro.. (original name was: gnl|Prokka|EPJBAJGM_46); c00047_gnlPro.. (original name was: gnl|Prokka|EPJBAJGM_47); c00048_gnlPro.. (original name was: gnl|Prokka|EPJBAJGM_48); c00049_gnlPro.. (original name was: gnl|Prokka|EPJBAJGM_49); c00050_gnlPro.. (original name was: gnl|Prokka|EPJBAJGM_50); c00051_gnlPro.. (original name was: gnl|Prokka|EPJBAJGM_51); c00053_gnlPro.. (original name was: gnl|Prokka|EPJBAJGM_53); c00054_gnlPro.. (original name was: gnl|Prokka|EPJBAJGM_54); c00055_gnlPro.. (original name was: gnl|Prokka|EPJBAJGM_55); c00057_gnlPro.. (original name was: gnl|Prokka|EPJBAJGM_57); c00058_gnlPro.. (original name was: gnl|Prokka|EPJBAJGM_58); c00059_gnlPro.. (original name was: gnl|Prokka|EPJBAJGM_59); c00060_gnlPro.. (original name was: gnl|Prokka|EPJBAJGM_60); c00061_gnlPro.. (original name was: gnl|Prokka|EPJBAJGM_61); c00062_gnlPro.. (original name was: gnl|Prokka|EPJBAJGM_62); c00063_gnlPro.. (original name was: gnl|Prokka|EPJBAJGM_63); c00064_gnlPro.. (original name was: gnl|Prokka|EPJBAJGM_64); c00065_gnlPro.. (original name was: gnl|Prokka|EPJBAJGM_65); c00066_gnlPro.. (original name was: gnl|Prokka|EPJBAJGM_66); c00067_gnlPro.. (original name was: gnl|Prokka|EPJBAJGM_67); c00068_gnlPro.. (original name was: gnl|Prokka|EPJBAJGM_68); c00069_gnlPro.. (original name was: gnl|Prokka|EPJBAJGM_69); c00070_gnlPro.. (original name was: gnl|Prokka|EPJBAJGM_70); c00071_gnlPro.. (original name was: gnl|Prokka|EPJBAJGM_71); c00072_gnlPro.. (original name was: gnl|Prokka|EPJBAJGM_72); c00073_gnlPro.. (original name was: gnl|Prokka|EPJBAJGM_73); c00074_gnlPro.. (original name was: gnl|Prokka|EPJBAJGM_74); c00075_gnlPro.. (original name was: gnl|Prokka|EPJBAJGM_75); c00076_gnlPro.. (original name was: gnl|Prokka|EPJBAJGM_76); c00077_gnlPro.. (original name was: gnl|Prokka|EPJBAJGM_77); c00078_gnlPro.. (original name was: gnl|Prokka|EPJBAJGM_78); c00079_gnlPro.. (original name was: gnl|Prokka|EPJBAJGM_79); c00080_gnlPro.. (original name was: gnl|Prokka|EPJBAJGM_80); c00081_gnlPro.. (original name was: gnl|Prokka|EPJBAJGM_81); c00082_gnlPro.. (original name was: gnl|Prokka|EPJBAJGM_82); c00083_gnlPro.. (original name was: gnl|Prokka|EPJBAJGM_83); c00084_gnlPro.. (original name was: gnl|Prokka|EPJBAJGM_84); c00085_gnlPro.. (original name was: gnl|Prokka|EPJBAJGM_85); c00086_gnlPro.. (original name was: gnl|Prokka|EPJBAJGM_86); c00087_gnlPro.. (original name was: gnl|Prokka|EPJBAJGM_87); c00088_gnlPro.. (original name was: gnl|Prokka|EPJBAJGM_88); c00089_gnlPro.. (original name was: gnl|Prokka|EPJBAJGM_89); c00090_gnlPro.. (original name was: gnl|Prokka|EPJBAJGM_90); c00091_gnlPro.. (original name was: gnl|Prokka|EPJBAJGM_91); c00092_gnlPro.. (original name was: gnl|Prokka|EPJBAJGM_92); c00093_gnlPro.. (original name was: gnl|Prokka|EPJBAJGM_93); c00094_gnlPro.. (original name was: gnl|Prokka|EPJBAJGM_94); c00095_gnlPro.. (original name was: gnl|Prokka|EPJBAJGM_95); c00096_gnlPro.. (original name was: gnl|Prokka|EPJBAJGM_96); c00097_gnlPro.. (original name was: gnl|Prokka|EPJBAJGM_97); c00098_gnlPro.. (original name was: gnl|Prokka|EPJBAJGM_98); c00099_gnlPro.. (original name was: gnl|Prokka|EPJBAJGM_99); c00100_gnlPro.. (original name was: gnl|Prokka|EPJBAJGM_100); c00101_gnlPro.. (original name was: gnl|Prokka|EPJBAJGM_101)

Compact view

c00003_gnlPro.. - Region 1 - PFOR_II_pathway

Download region GenBank file

Location: 95,774 - 119,331 nt. (total: 23,558 nt) Show pHMM detection rules used

PFOR_II_pathway: cds(POR and POR_N and PFOR_II and EKR and Fer4_16 and TPP_enzyme_C)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

c00004_gnlPro.. - Region 1 - succinate2propionate

Download region GenBank file

Location: 6,192 - 30,900 nt. (total: 24,709 nt) Show pHMM detection rules used

succinate2propionate: (minimum(4, [AcetylCoA_hyd_C, AcetylCoA_hydro, B12-binding, Biotin_lipoyl, Glyoxalase_4, HMGL-like, MM_CoA_mutase, MeaB, OAD_beta, OAD_gamma, PYC_OADA]) and minimum(1, [CT_Btheta, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, CT_Vparvula]) and not Cytidylate_kin)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

c00004_gnlPro.. - Region 2 - porA

Download region GenBank file

Location: 111,906 - 128,260 nt. (total: 16,355 nt) Show pHMM detection rules used

Region on contig edge.

porA: (Fer4_7 and TPP_enzyme_C and POR and POR_N and PFOR_II and not (EKR or Fer4_16))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

c00010_gnlPro.. - Region 1 - NADH_dehydrogenase_I

Download region GenBank file

Location: 5,626 - 35,857 nt. (total: 30,232 nt) Show pHMM detection rules used

NADH_dehydrogenase_I: (Oxidored_q4 and Oxidored_q6 and Complex1_30kDa and Complex1_49kDa and NADHdh and Oxidored_q3 and Oxidored_q2 and minimum(4, [Fe-2S_thioredx, Fer2_4, Fer4_7, Molybdop_Fe4S4, Molydop_binding, NADH-G_4Fe-4S_3, NADH_4Fe-4S, Proton_antipo_M, Proton_antipo_N, SLBB]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

c00025_gnlPro.. - Region 1 - Fumarate2succinate

Download region GenBank file

Location: 34,017 - 57,487 nt. (total: 23,471 nt) Show pHMM detection rules used

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

c00052_gnlPro.. - Region 1 - TPP_AA_metabolism

Download region GenBank file

Location: 8,553 - 30,056 nt. (total: 21,504 nt) Show pHMM detection rules used

Region on contig edge.

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

No matches found.

c00056_gnlPro.. - Region 1 - Rnf_complex

Download region GenBank file

Location: 1 - 13,846 nt. (total: 13,846 nt) Show pHMM detection rules used

Region on contig edge.

Rnf_complex: (Complex1_51K and minimum(5, [FMN_bind, FeS, Fer4, Fer4_9, NQR2_RnfD_RnfE, Rnf-Nqr, RnfC_N, SLBB]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters