GCA_949000565.1 - 6 region(s)

Identified primary metabolite regions

c00001_gnlPro.. (original name was: gnl|Prokka|DIBOPDKM_1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 1.1	Pyruvate2acetate-formate	SCFA	67,534	90,597	Pyruvate to acetate and formate C. acetobutylicum	PFL_acetate	100%

c00003_gnlPro.. (original name was: gnl|Prokka|DIBOPDKM_3)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 3.1	Pyruvate2acetate-formate	SCFA	7,158	30,221	Pyruvate to acetate and formate C. acetobutylicum	PFL_acetate	100%

c00004_gnlPro.. (original name was: gnl|Prokka|DIBOPDKM_4)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 4.1	Glycine_cleavage	Other	197,126	211,692	Glycine cleavage C. sticklandii	GLY	60%

c00011_gnlPro.. (original name was: gnl|Prokka|DIBOPDKM_11)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 11.1	succinate2propionate,TPP_fatty_acids	Putative	19,952	55,639	Succinate to propionate A. sp. KLE1797	SUC	100%

c00016_gnlPro.. (original name was: gnl|Prokka|DIBOPDKM_16)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 16.1	PFOR_II_pathway	SCFA	38,723	62,301	PFOR II pathway B. thetaiotaomicron	PFORII	100%

c00018_gnlPro.. (original name was: gnl|Prokka|DIBOPDKM_18)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 18.1	Fumarate2succinate	SCFA	1	13,689	Fumarate to succinate B. thetaiotaomicron	SUC	66%

Compact view

c00001_gnlPro.. - Region 1 - Pyruvate2acetate-formate

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Location: 67,534 - 90,597 nt. (total: 23,064 nt) Show pHMM detection rules used

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

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c00003_gnlPro.. - Region 1 - Pyruvate2acetate-formate

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Location: 7,158 - 30,221 nt. (total: 23,064 nt) Show pHMM detection rules used

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

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c00004_gnlPro.. - Region 1 - Glycine_cleavage

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Location: 197,126 - 211,692 nt. (total: 14,567 nt) Show pHMM detection rules used

Region on contig edge.

Glycine_cleavage: (minimum(2, [Aminotran_5, GCV_H, GCV_T, GDC-P, SoxG]) and GCV_H and GCV_T_C)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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c00011_gnlPro.. - Region 1 - TPP_fatty_acids,succinate2propionate

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Location: 19,952 - 55,639 nt. (total: 35,688 nt) Show pHMM detection rules used

succinate2propionate: (minimum(4, [AcetylCoA_hyd_C, AcetylCoA_hydro, B12-binding, Biotin_lipoyl, Glyoxalase_4, HMGL-like, MM_CoA_mutase, MeaB, OAD_beta, OAD_gamma, PYC_OADA]) and minimum(1, [CT_Btheta, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, CT_Vparvula]) and not Cytidylate_kin)
TPP_fatty_acids: (TPP_enzyme_C and (minimum(2, [ACD1_car, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, Butyrate_kinase, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_2_CAF, CoA_trans_6_Glutaconate, E1_dh, ECH_1, ECH_2, HBT, HBT_2, HCDH, HpaB, Ketoacyl-synt_C, Thiolase_C, Thiolase_N, adh_short, adh_short_C2]) or FA_synthesis) and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and not (POR or POR_N))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

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c00016_gnlPro.. - Region 1 - PFOR_II_pathway

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Location: 38,723 - 62,301 nt. (total: 23,579 nt) Show pHMM detection rules used

PFOR_II_pathway: cds(POR and POR_N and PFOR_II and EKR and Fer4_16 and TPP_enzyme_C)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

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c00018_gnlPro.. - Region 1 - Fumarate2succinate

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Location: 1 - 13,689 nt. (total: 13,689 nt) Show pHMM detection rules used

Region on contig edge.

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters