GCA_949093445.1 - 5 region(s)

Identified primary metabolite regions

c00002_gnlPro.. (original name was: gnl|Prokka|GNECJDAN_2)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 2.1	Pyruvate2acetate-formate	SCFA	74,686	97,749	Pyruvate to acetate and formate C. acetobutylicum	PFL_acetate	100%

c00004_gnlPro.. (original name was: gnl|Prokka|GNECJDAN_4)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 4.1	PFOR_II_pathway	SCFA	171,331	194,909	PFOR II pathway B. thetaiotaomicron	PFORII	100%

c00010_gnlPro.. (original name was: gnl|Prokka|GNECJDAN_10)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 10.1	TPP_fatty_acids,succinate2propionate	SCFA	41,178	76,865	Succinate to propionate A. sp. KLE1797	SUC	100%

c00015_gnlPro.. (original name was: gnl|Prokka|GNECJDAN_15)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 15.1	Glycine_cleavage	Other	24,401	48,879	Glycine cleavage C. sticklandii	GLY	60%

c00016_gnlPro.. (original name was: gnl|Prokka|GNECJDAN_16)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 16.1	Fumarate2succinate	SCFA	41,175	54,863	Fumarate to succinate B. thetaiotaomicron	SUC	66%

No primary metabolite regions were found in these records:: c00001_gnlPro.. (original name was: gnl|Prokka|GNECJDAN_1); c00003_gnlPro.. (original name was: gnl|Prokka|GNECJDAN_3); c00005_gnlPro.. (original name was: gnl|Prokka|GNECJDAN_5); c00006_gnlPro.. (original name was: gnl|Prokka|GNECJDAN_6); c00007_gnlPro.. (original name was: gnl|Prokka|GNECJDAN_7); c00008_gnlPro.. (original name was: gnl|Prokka|GNECJDAN_8); c00009_gnlPro.. (original name was: gnl|Prokka|GNECJDAN_9); c00011_gnlPro.. (original name was: gnl|Prokka|GNECJDAN_11); c00012_gnlPro.. (original name was: gnl|Prokka|GNECJDAN_12); c00013_gnlPro.. (original name was: gnl|Prokka|GNECJDAN_13); c00014_gnlPro.. (original name was: gnl|Prokka|GNECJDAN_14); c00017_gnlPro.. (original name was: gnl|Prokka|GNECJDAN_17); c00018_gnlPro.. (original name was: gnl|Prokka|GNECJDAN_18); c00019_gnlPro.. (original name was: gnl|Prokka|GNECJDAN_19); c00020_gnlPro.. (original name was: gnl|Prokka|GNECJDAN_20); c00021_gnlPro.. (original name was: gnl|Prokka|GNECJDAN_21); c00022_gnlPro.. (original name was: gnl|Prokka|GNECJDAN_22); c00023_gnlPro.. (original name was: gnl|Prokka|GNECJDAN_23); c00024_gnlPro.. (original name was: gnl|Prokka|GNECJDAN_24); c00025_gnlPro.. (original name was: gnl|Prokka|GNECJDAN_25); c00026_gnlPro.. (original name was: gnl|Prokka|GNECJDAN_26); c00027_gnlPro.. (original name was: gnl|Prokka|GNECJDAN_27); c00028_gnlPro.. (original name was: gnl|Prokka|GNECJDAN_28); c00029_gnlPro.. (original name was: gnl|Prokka|GNECJDAN_29); c00030_gnlPro.. (original name was: gnl|Prokka|GNECJDAN_30); c00031_gnlPro.. (original name was: gnl|Prokka|GNECJDAN_31); c00032_gnlPro.. (original name was: gnl|Prokka|GNECJDAN_32); c00033_gnlPro.. (original name was: gnl|Prokka|GNECJDAN_33); c00034_gnlPro.. (original name was: gnl|Prokka|GNECJDAN_34); c00035_gnlPro.. (original name was: gnl|Prokka|GNECJDAN_35); c00036_gnlPro.. (original name was: gnl|Prokka|GNECJDAN_36); c00037_gnlPro.. (original name was: gnl|Prokka|GNECJDAN_37); c00038_gnlPro.. (original name was: gnl|Prokka|GNECJDAN_38); c00039_gnlPro.. (original name was: gnl|Prokka|GNECJDAN_39); c00040_gnlPro.. (original name was: gnl|Prokka|GNECJDAN_40); c00041_gnlPro.. (original name was: gnl|Prokka|GNECJDAN_41); c00042_gnlPro.. (original name was: gnl|Prokka|GNECJDAN_42); c00043_gnlPro.. (original name was: gnl|Prokka|GNECJDAN_43); c00044_gnlPro.. (original name was: gnl|Prokka|GNECJDAN_44); c00045_gnlPro.. (original name was: gnl|Prokka|GNECJDAN_45); c00046_gnlPro.. (original name was: gnl|Prokka|GNECJDAN_46); c00047_gnlPro.. (original name was: gnl|Prokka|GNECJDAN_47); c00048_gnlPro.. (original name was: gnl|Prokka|GNECJDAN_48); c00049_gnlPro.. (original name was: gnl|Prokka|GNECJDAN_49)

Compact view

c00002_gnlPro.. - Region 1 - Pyruvate2acetate-formate

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Location: 74,686 - 97,749 nt. (total: 23,064 nt) Show pHMM detection rules used

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

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c00004_gnlPro.. - Region 1 - PFOR_II_pathway

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Location: 171,331 - 194,909 nt. (total: 23,579 nt) Show pHMM detection rules used

PFOR_II_pathway: cds(POR and POR_N and PFOR_II and EKR and Fer4_16 and TPP_enzyme_C)

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core biosynthetic genes

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regulatory genes

resistance genes

encapsulation genes

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c00010_gnlPro.. - Region 1 - TPP_fatty_acids,succinate2propionate

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Location: 41,178 - 76,865 nt. (total: 35,688 nt) Show pHMM detection rules used

TPP_fatty_acids: (TPP_enzyme_C and (minimum(2, [ACD1_car, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, Butyrate_kinase, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_2_CAF, CoA_trans_6_Glutaconate, E1_dh, ECH_1, ECH_2, HBT, HBT_2, HCDH, HpaB, Ketoacyl-synt_C, Thiolase_C, Thiolase_N, adh_short, adh_short_C2]) or FA_synthesis) and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and not (POR or POR_N))
succinate2propionate: (minimum(4, [AcetylCoA_hyd_C, AcetylCoA_hydro, B12-binding, Biotin_lipoyl, Glyoxalase_4, HMGL-like, MM_CoA_mutase, MeaB, OAD_beta, OAD_gamma, PYC_OADA]) and minimum(1, [CT_Btheta, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, CT_Vparvula]) and not Cytidylate_kin)

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

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electron transport genes

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c00015_gnlPro.. - Region 1 - Glycine_cleavage

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Location: 24,401 - 48,879 nt. (total: 24,479 nt) Show pHMM detection rules used

Glycine_cleavage: (minimum(2, [Aminotran_5, GCV_H, GCV_T, GDC-P, SoxG]) and GCV_H and GCV_T_C)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

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c00016_gnlPro.. - Region 1 - Fumarate2succinate

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Location: 41,175 - 54,863 nt. (total: 13,689 nt) Show pHMM detection rules used

Region on contig edge.

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters