GCA_949404485.1 - 4 region(s)

Identified primary metabolite regions

c00004_gnlPro.. (original name was: gnl|Prokka|JJLNGNPP_4)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 4.1	NADH_dehydrogenase_I	E-MGC	33,104	63,335	NADH dehydrogenase I Bacteroides sp.	NADHD	80%

c00006_gnlPro.. (original name was: gnl|Prokka|JJLNGNPP_6)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 6.1	PFOR_II_pathway	SCFA	13,961	37,518	PFOR II pathway B. thetaiotaomicron	PFORII	100%

c00063_gnlPro.. (original name was: gnl|Prokka|JJLNGNPP_63)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 63.1	Rnf_complex	E-MGC	1	13,285	Rnf complex C. sporogenes	RNF	50%

c00100_gnlPro.. (original name was: gnl|Prokka|JJLNGNPP_100)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 100.1	TPP_AA_metabolism	Putative	1	5,188

No primary metabolite regions were found in these records:: c00001_gnlPro.. (original name was: gnl|Prokka|JJLNGNPP_1); c00002_gnlPro.. (original name was: gnl|Prokka|JJLNGNPP_2); c00003_gnlPro.. (original name was: gnl|Prokka|JJLNGNPP_3); c00005_gnlPro.. (original name was: gnl|Prokka|JJLNGNPP_5); c00007_gnlPro.. (original name was: gnl|Prokka|JJLNGNPP_7); c00008_gnlPro.. (original name was: gnl|Prokka|JJLNGNPP_8); c00009_gnlPro.. (original name was: gnl|Prokka|JJLNGNPP_9); c00010_gnlPro.. (original name was: gnl|Prokka|JJLNGNPP_10); c00011_gnlPro.. (original name was: gnl|Prokka|JJLNGNPP_11); c00012_gnlPro.. (original name was: gnl|Prokka|JJLNGNPP_12); c00013_gnlPro.. (original name was: gnl|Prokka|JJLNGNPP_13); c00014_gnlPro.. (original name was: gnl|Prokka|JJLNGNPP_14); c00015_gnlPro.. (original name was: gnl|Prokka|JJLNGNPP_15); c00016_gnlPro.. (original name was: gnl|Prokka|JJLNGNPP_16); c00017_gnlPro.. (original name was: gnl|Prokka|JJLNGNPP_17); c00018_gnlPro.. (original name was: gnl|Prokka|JJLNGNPP_18); c00019_gnlPro.. (original name was: gnl|Prokka|JJLNGNPP_19); c00020_gnlPro.. (original name was: gnl|Prokka|JJLNGNPP_20); c00021_gnlPro.. (original name was: gnl|Prokka|JJLNGNPP_21); c00022_gnlPro.. (original name was: gnl|Prokka|JJLNGNPP_22); c00023_gnlPro.. (original name was: gnl|Prokka|JJLNGNPP_23); c00024_gnlPro.. (original name was: gnl|Prokka|JJLNGNPP_24); c00025_gnlPro.. (original name was: gnl|Prokka|JJLNGNPP_25); c00026_gnlPro.. (original name was: gnl|Prokka|JJLNGNPP_26); c00027_gnlPro.. (original name was: gnl|Prokka|JJLNGNPP_27); c00028_gnlPro.. (original name was: gnl|Prokka|JJLNGNPP_28); c00029_gnlPro.. (original name was: gnl|Prokka|JJLNGNPP_29); c00030_gnlPro.. (original name was: gnl|Prokka|JJLNGNPP_30); c00031_gnlPro.. (original name was: gnl|Prokka|JJLNGNPP_31); c00032_gnlPro.. (original name was: gnl|Prokka|JJLNGNPP_32); c00033_gnlPro.. (original name was: gnl|Prokka|JJLNGNPP_33); c00034_gnlPro.. (original name was: gnl|Prokka|JJLNGNPP_34); c00035_gnlPro.. (original name was: gnl|Prokka|JJLNGNPP_35); c00036_gnlPro.. (original name was: gnl|Prokka|JJLNGNPP_36); c00037_gnlPro.. (original name was: gnl|Prokka|JJLNGNPP_37); c00038_gnlPro.. (original name was: gnl|Prokka|JJLNGNPP_38); c00039_gnlPro.. (original name was: gnl|Prokka|JJLNGNPP_39); c00040_gnlPro.. (original name was: gnl|Prokka|JJLNGNPP_40); c00041_gnlPro.. (original name was: gnl|Prokka|JJLNGNPP_41); c00042_gnlPro.. (original name was: gnl|Prokka|JJLNGNPP_42); c00043_gnlPro.. (original name was: gnl|Prokka|JJLNGNPP_43); c00044_gnlPro.. (original name was: gnl|Prokka|JJLNGNPP_44); c00045_gnlPro.. (original name was: gnl|Prokka|JJLNGNPP_45); c00046_gnlPro.. (original name was: gnl|Prokka|JJLNGNPP_46); c00047_gnlPro.. (original name was: gnl|Prokka|JJLNGNPP_47); c00048_gnlPro.. (original name was: gnl|Prokka|JJLNGNPP_48); c00049_gnlPro.. (original name was: gnl|Prokka|JJLNGNPP_49); c00050_gnlPro.. (original name was: gnl|Prokka|JJLNGNPP_50); c00051_gnlPro.. (original name was: gnl|Prokka|JJLNGNPP_51); c00052_gnlPro.. (original name was: gnl|Prokka|JJLNGNPP_52); c00053_gnlPro.. (original name was: gnl|Prokka|JJLNGNPP_53); c00054_gnlPro.. (original name was: gnl|Prokka|JJLNGNPP_54); c00055_gnlPro.. (original name was: gnl|Prokka|JJLNGNPP_55); c00056_gnlPro.. (original name was: gnl|Prokka|JJLNGNPP_56); c00057_gnlPro.. (original name was: gnl|Prokka|JJLNGNPP_57); c00058_gnlPro.. (original name was: gnl|Prokka|JJLNGNPP_58); c00059_gnlPro.. (original name was: gnl|Prokka|JJLNGNPP_59); c00060_gnlPro.. (original name was: gnl|Prokka|JJLNGNPP_60); c00061_gnlPro.. (original name was: gnl|Prokka|JJLNGNPP_61); c00062_gnlPro.. (original name was: gnl|Prokka|JJLNGNPP_62); c00064_gnlPro.. (original name was: gnl|Prokka|JJLNGNPP_64); c00065_gnlPro.. (original name was: gnl|Prokka|JJLNGNPP_65); c00066_gnlPro.. (original name was: gnl|Prokka|JJLNGNPP_66); c00067_gnlPro.. (original name was: gnl|Prokka|JJLNGNPP_67); c00068_gnlPro.. (original name was: gnl|Prokka|JJLNGNPP_68); c00069_gnlPro.. (original name was: gnl|Prokka|JJLNGNPP_69); c00070_gnlPro.. (original name was: gnl|Prokka|JJLNGNPP_70); c00071_gnlPro.. (original name was: gnl|Prokka|JJLNGNPP_71); c00072_gnlPro.. (original name was: gnl|Prokka|JJLNGNPP_72); c00073_gnlPro.. (original name was: gnl|Prokka|JJLNGNPP_73); c00074_gnlPro.. (original name was: gnl|Prokka|JJLNGNPP_74); c00075_gnlPro.. (original name was: gnl|Prokka|JJLNGNPP_75); c00076_gnlPro.. (original name was: gnl|Prokka|JJLNGNPP_76); c00077_gnlPro.. (original name was: gnl|Prokka|JJLNGNPP_77); c00078_gnlPro.. (original name was: gnl|Prokka|JJLNGNPP_78); c00079_gnlPro.. (original name was: gnl|Prokka|JJLNGNPP_79); c00080_gnlPro.. (original name was: gnl|Prokka|JJLNGNPP_80); c00081_gnlPro.. (original name was: gnl|Prokka|JJLNGNPP_81); c00082_gnlPro.. (original name was: gnl|Prokka|JJLNGNPP_82); c00083_gnlPro.. (original name was: gnl|Prokka|JJLNGNPP_83); c00084_gnlPro.. (original name was: gnl|Prokka|JJLNGNPP_84); c00085_gnlPro.. (original name was: gnl|Prokka|JJLNGNPP_85); c00086_gnlPro.. (original name was: gnl|Prokka|JJLNGNPP_86); c00087_gnlPro.. (original name was: gnl|Prokka|JJLNGNPP_87); c00088_gnlPro.. (original name was: gnl|Prokka|JJLNGNPP_88); c00089_gnlPro.. (original name was: gnl|Prokka|JJLNGNPP_89); c00090_gnlPro.. (original name was: gnl|Prokka|JJLNGNPP_90); c00091_gnlPro.. (original name was: gnl|Prokka|JJLNGNPP_91); c00092_gnlPro.. (original name was: gnl|Prokka|JJLNGNPP_92); c00093_gnlPro.. (original name was: gnl|Prokka|JJLNGNPP_93); c00094_gnlPro.. (original name was: gnl|Prokka|JJLNGNPP_94); c00095_gnlPro.. (original name was: gnl|Prokka|JJLNGNPP_95); c00096_gnlPro.. (original name was: gnl|Prokka|JJLNGNPP_96); c00097_gnlPro.. (original name was: gnl|Prokka|JJLNGNPP_97); c00098_gnlPro.. (original name was: gnl|Prokka|JJLNGNPP_98); c00099_gnlPro.. (original name was: gnl|Prokka|JJLNGNPP_99); c00101_gnlPro.. (original name was: gnl|Prokka|JJLNGNPP_101); c00102_gnlPro.. (original name was: gnl|Prokka|JJLNGNPP_102); c00103_gnlPro.. (original name was: gnl|Prokka|JJLNGNPP_103); c00104_gnlPro.. (original name was: gnl|Prokka|JJLNGNPP_104); c00105_gnlPro.. (original name was: gnl|Prokka|JJLNGNPP_105); c00106_gnlPro.. (original name was: gnl|Prokka|JJLNGNPP_106); c00107_gnlPro.. (original name was: gnl|Prokka|JJLNGNPP_107); c00108_gnlPro.. (original name was: gnl|Prokka|JJLNGNPP_108); c00109_gnlPro.. (original name was: gnl|Prokka|JJLNGNPP_109); c00110_gnlPro.. (original name was: gnl|Prokka|JJLNGNPP_110); c00111_gnlPro.. (original name was: gnl|Prokka|JJLNGNPP_111); c00112_gnlPro.. (original name was: gnl|Prokka|JJLNGNPP_112); c00113_gnlPro.. (original name was: gnl|Prokka|JJLNGNPP_113); c00114_gnlPro.. (original name was: gnl|Prokka|JJLNGNPP_114); c00115_gnlPro.. (original name was: gnl|Prokka|JJLNGNPP_115); c00116_gnlPro.. (original name was: gnl|Prokka|JJLNGNPP_116); c00117_gnlPro.. (original name was: gnl|Prokka|JJLNGNPP_117); c00118_gnlPro.. (original name was: gnl|Prokka|JJLNGNPP_118); c00119_gnlPro.. (original name was: gnl|Prokka|JJLNGNPP_119); c00120_gnlPro.. (original name was: gnl|Prokka|JJLNGNPP_120); c00121_gnlPro.. (original name was: gnl|Prokka|JJLNGNPP_121)

Compact view

c00004_gnlPro.. - Region 1 - NADH_dehydrogenase_I

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Location: 33,104 - 63,335 nt. (total: 30,232 nt) Show pHMM detection rules used

NADH_dehydrogenase_I: (Oxidored_q4 and Oxidored_q6 and Complex1_30kDa and Complex1_49kDa and NADHdh and Oxidored_q3 and Oxidored_q2 and minimum(4, [Fe-2S_thioredx, Fer2_4, Fer4_7, Molybdop_Fe4S4, Molydop_binding, NADH-G_4Fe-4S_3, NADH_4Fe-4S, Proton_antipo_M, Proton_antipo_N, SLBB]))

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

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KnownClusterBlast

Similar known gene clusters

c00006_gnlPro.. - Region 1 - PFOR_II_pathway

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Location: 13,961 - 37,518 nt. (total: 23,558 nt) Show pHMM detection rules used

PFOR_II_pathway: cds(POR and POR_N and PFOR_II and EKR and Fer4_16 and TPP_enzyme_C)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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KnownClusterBlast

Similar known gene clusters

c00063_gnlPro.. - Region 1 - Rnf_complex

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Location: 1 - 13,285 nt. (total: 13,285 nt) Show pHMM detection rules used

Region on contig edge.

Rnf_complex: (Complex1_51K and minimum(5, [FMN_bind, FeS, Fer4, Fer4_9, NQR2_RnfD_RnfE, Rnf-Nqr, RnfC_N, SLBB]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

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c00100_gnlPro.. - Region 1 - TPP_AA_metabolism

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Location: 1 - 5,188 nt. (total: 5,188 nt) Show pHMM detection rules used

Region on contig edge.

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

No matches found.