GCA_949415675.1 - 10 region(s)

Identified primary metabolite regions

c00001_gnlPro.. (original name was: gnl|Prokka|IBKAMOEM_1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 1.1	Rnf_complex	E-MGC	156,473	181,809	Rnf complex C. sporogenes	RNF	83%

c00002_gnlPro.. (original name was: gnl|Prokka|IBKAMOEM_2)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 2.1	succinate2propionate	SCFA	3,657	28,300	Succinate to propionate B. theta	PRO	50%
Region 2.2	TPP_AA_metabolism	Putative	64,606	90,593

c00003_gnlPro.. (original name was: gnl|Prokka|IBKAMOEM_3)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 3.1	Pyruvate2acetate-formate	SCFA	100,847	123,872	Pyruvate to acetate-formate B. thetaiotaomicron	PFL_acetate	100%

c00004_gnlPro.. (original name was: gnl|Prokka|IBKAMOEM_4)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 4.1	fatty_acids-unassigned	Putative	115,581	144,049

c00012_gnlPro.. (original name was: gnl|Prokka|IBKAMOEM_12)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 12.1	PFOR_II_pathway	SCFA	46,191	69,736	PFOR II pathway B. thetaiotaomicron	PFORII	100%

c00013_gnlPro.. (original name was: gnl|Prokka|IBKAMOEM_13)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 13.1	porA	SCFA	58,275	81,112	porA C. sporogenes	POR	60%

c00020_gnlPro.. (original name was: gnl|Prokka|IBKAMOEM_20)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 20.1	TPP_fatty_acids	Putative	27,939	52,006

c00037_gnlPro.. (original name was: gnl|Prokka|IBKAMOEM_37)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 37.1	NADH_dehydrogenase_I	E-MGC	1	23,479	NADH dehydrogenase I Bacteroides sp.	NADHD	66%

c00093_gnlPro.. (original name was: gnl|Prokka|IBKAMOEM_93)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 93.1	Fumarate2succinate	SCFA	1	9,560	Fumarate to succinate B. thetaiotaomicron	SUC	100%

No primary metabolite regions were found in these records:: c00005_gnlPro.. (original name was: gnl|Prokka|IBKAMOEM_5); c00006_gnlPro.. (original name was: gnl|Prokka|IBKAMOEM_6); c00007_gnlPro.. (original name was: gnl|Prokka|IBKAMOEM_7); c00008_gnlPro.. (original name was: gnl|Prokka|IBKAMOEM_8); c00009_gnlPro.. (original name was: gnl|Prokka|IBKAMOEM_9); c00010_gnlPro.. (original name was: gnl|Prokka|IBKAMOEM_10); c00011_gnlPro.. (original name was: gnl|Prokka|IBKAMOEM_11); c00014_gnlPro.. (original name was: gnl|Prokka|IBKAMOEM_14); c00015_gnlPro.. (original name was: gnl|Prokka|IBKAMOEM_15); c00016_gnlPro.. (original name was: gnl|Prokka|IBKAMOEM_16); c00017_gnlPro.. (original name was: gnl|Prokka|IBKAMOEM_17); c00018_gnlPro.. (original name was: gnl|Prokka|IBKAMOEM_18); c00019_gnlPro.. (original name was: gnl|Prokka|IBKAMOEM_19); c00021_gnlPro.. (original name was: gnl|Prokka|IBKAMOEM_21); c00022_gnlPro.. (original name was: gnl|Prokka|IBKAMOEM_22); c00023_gnlPro.. (original name was: gnl|Prokka|IBKAMOEM_23); c00024_gnlPro.. (original name was: gnl|Prokka|IBKAMOEM_24); c00025_gnlPro.. (original name was: gnl|Prokka|IBKAMOEM_25); c00026_gnlPro.. (original name was: gnl|Prokka|IBKAMOEM_26); c00027_gnlPro.. (original name was: gnl|Prokka|IBKAMOEM_27); c00028_gnlPro.. (original name was: gnl|Prokka|IBKAMOEM_28); c00029_gnlPro.. (original name was: gnl|Prokka|IBKAMOEM_29); c00030_gnlPro.. (original name was: gnl|Prokka|IBKAMOEM_30); c00031_gnlPro.. (original name was: gnl|Prokka|IBKAMOEM_31); c00032_gnlPro.. (original name was: gnl|Prokka|IBKAMOEM_32); c00033_gnlPro.. (original name was: gnl|Prokka|IBKAMOEM_33); c00034_gnlPro.. (original name was: gnl|Prokka|IBKAMOEM_34); c00035_gnlPro.. (original name was: gnl|Prokka|IBKAMOEM_35); c00036_gnlPro.. (original name was: gnl|Prokka|IBKAMOEM_36); c00038_gnlPro.. (original name was: gnl|Prokka|IBKAMOEM_38); c00039_gnlPro.. (original name was: gnl|Prokka|IBKAMOEM_39); c00040_gnlPro.. (original name was: gnl|Prokka|IBKAMOEM_40); c00041_gnlPro.. (original name was: gnl|Prokka|IBKAMOEM_41); c00042_gnlPro.. (original name was: gnl|Prokka|IBKAMOEM_42); c00043_gnlPro.. (original name was: gnl|Prokka|IBKAMOEM_43); c00044_gnlPro.. (original name was: gnl|Prokka|IBKAMOEM_44); c00045_gnlPro.. (original name was: gnl|Prokka|IBKAMOEM_45); c00046_gnlPro.. (original name was: gnl|Prokka|IBKAMOEM_46); c00047_gnlPro.. (original name was: gnl|Prokka|IBKAMOEM_47); c00048_gnlPro.. (original name was: gnl|Prokka|IBKAMOEM_48); c00049_gnlPro.. (original name was: gnl|Prokka|IBKAMOEM_49); c00050_gnlPro.. (original name was: gnl|Prokka|IBKAMOEM_50); c00051_gnlPro.. (original name was: gnl|Prokka|IBKAMOEM_51); c00052_gnlPro.. (original name was: gnl|Prokka|IBKAMOEM_52); c00053_gnlPro.. (original name was: gnl|Prokka|IBKAMOEM_53); c00054_gnlPro.. (original name was: gnl|Prokka|IBKAMOEM_54); c00055_gnlPro.. (original name was: gnl|Prokka|IBKAMOEM_55); c00056_gnlPro.. (original name was: gnl|Prokka|IBKAMOEM_56); c00057_gnlPro.. (original name was: gnl|Prokka|IBKAMOEM_57); c00058_gnlPro.. (original name was: gnl|Prokka|IBKAMOEM_58); c00059_gnlPro.. (original name was: gnl|Prokka|IBKAMOEM_59); c00060_gnlPro.. (original name was: gnl|Prokka|IBKAMOEM_60); c00061_gnlPro.. (original name was: gnl|Prokka|IBKAMOEM_61); c00062_gnlPro.. (original name was: gnl|Prokka|IBKAMOEM_62); c00063_gnlPro.. (original name was: gnl|Prokka|IBKAMOEM_63); c00064_gnlPro.. (original name was: gnl|Prokka|IBKAMOEM_64); c00065_gnlPro.. (original name was: gnl|Prokka|IBKAMOEM_65); c00066_gnlPro.. (original name was: gnl|Prokka|IBKAMOEM_66); c00067_gnlPro.. (original name was: gnl|Prokka|IBKAMOEM_67); c00068_gnlPro.. (original name was: gnl|Prokka|IBKAMOEM_68); c00069_gnlPro.. (original name was: gnl|Prokka|IBKAMOEM_69); c00070_gnlPro.. (original name was: gnl|Prokka|IBKAMOEM_70); c00071_gnlPro.. (original name was: gnl|Prokka|IBKAMOEM_71); c00072_gnlPro.. (original name was: gnl|Prokka|IBKAMOEM_72); c00073_gnlPro.. (original name was: gnl|Prokka|IBKAMOEM_73); c00074_gnlPro.. (original name was: gnl|Prokka|IBKAMOEM_74); c00075_gnlPro.. (original name was: gnl|Prokka|IBKAMOEM_75); c00076_gnlPro.. (original name was: gnl|Prokka|IBKAMOEM_76); c00077_gnlPro.. (original name was: gnl|Prokka|IBKAMOEM_77); c00078_gnlPro.. (original name was: gnl|Prokka|IBKAMOEM_78); c00079_gnlPro.. (original name was: gnl|Prokka|IBKAMOEM_79); c00080_gnlPro.. (original name was: gnl|Prokka|IBKAMOEM_80); c00081_gnlPro.. (original name was: gnl|Prokka|IBKAMOEM_81); c00082_gnlPro.. (original name was: gnl|Prokka|IBKAMOEM_82); c00083_gnlPro.. (original name was: gnl|Prokka|IBKAMOEM_83); c00084_gnlPro.. (original name was: gnl|Prokka|IBKAMOEM_84); c00085_gnlPro.. (original name was: gnl|Prokka|IBKAMOEM_85); c00086_gnlPro.. (original name was: gnl|Prokka|IBKAMOEM_86); c00087_gnlPro.. (original name was: gnl|Prokka|IBKAMOEM_87); c00088_gnlPro.. (original name was: gnl|Prokka|IBKAMOEM_88); c00089_gnlPro.. (original name was: gnl|Prokka|IBKAMOEM_89); c00090_gnlPro.. (original name was: gnl|Prokka|IBKAMOEM_90); c00091_gnlPro.. (original name was: gnl|Prokka|IBKAMOEM_91); c00092_gnlPro.. (original name was: gnl|Prokka|IBKAMOEM_92); c00094_gnlPro.. (original name was: gnl|Prokka|IBKAMOEM_94); c00095_gnlPro.. (original name was: gnl|Prokka|IBKAMOEM_95); c00096_gnlPro.. (original name was: gnl|Prokka|IBKAMOEM_96); c00097_gnlPro.. (original name was: gnl|Prokka|IBKAMOEM_97); c00098_gnlPro.. (original name was: gnl|Prokka|IBKAMOEM_98); c00099_gnlPro.. (original name was: gnl|Prokka|IBKAMOEM_99); c00100_gnlPro.. (original name was: gnl|Prokka|IBKAMOEM_100); c00101_gnlPro.. (original name was: gnl|Prokka|IBKAMOEM_101); c00102_gnlPro.. (original name was: gnl|Prokka|IBKAMOEM_102); c00103_gnlPro.. (original name was: gnl|Prokka|IBKAMOEM_103); c00104_gnlPro.. (original name was: gnl|Prokka|IBKAMOEM_104); c00105_gnlPro.. (original name was: gnl|Prokka|IBKAMOEM_105); c00106_gnlPro.. (original name was: gnl|Prokka|IBKAMOEM_106); c00107_gnlPro.. (original name was: gnl|Prokka|IBKAMOEM_107); c00108_gnlPro.. (original name was: gnl|Prokka|IBKAMOEM_108); c00109_gnlPro.. (original name was: gnl|Prokka|IBKAMOEM_109); c00110_gnlPro.. (original name was: gnl|Prokka|IBKAMOEM_110); c00111_gnlPro.. (original name was: gnl|Prokka|IBKAMOEM_111); c00112_gnlPro.. (original name was: gnl|Prokka|IBKAMOEM_112); c00113_gnlPro.. (original name was: gnl|Prokka|IBKAMOEM_113); c00114_gnlPro.. (original name was: gnl|Prokka|IBKAMOEM_114); c00115_gnlPro.. (original name was: gnl|Prokka|IBKAMOEM_115); c00116_gnlPro.. (original name was: gnl|Prokka|IBKAMOEM_116); c00117_gnlPro.. (original name was: gnl|Prokka|IBKAMOEM_117); c00118_gnlPro.. (original name was: gnl|Prokka|IBKAMOEM_118); c00119_gnlPro.. (original name was: gnl|Prokka|IBKAMOEM_119); c00120_gnlPro.. (original name was: gnl|Prokka|IBKAMOEM_120); c00121_gnlPro.. (original name was: gnl|Prokka|IBKAMOEM_121); c00122_gnlPro.. (original name was: gnl|Prokka|IBKAMOEM_122); c00123_gnlPro.. (original name was: gnl|Prokka|IBKAMOEM_123); c00124_gnlPro.. (original name was: gnl|Prokka|IBKAMOEM_124); c00125_gnlPro.. (original name was: gnl|Prokka|IBKAMOEM_125); c00126_gnlPro.. (original name was: gnl|Prokka|IBKAMOEM_126); c00127_gnlPro.. (original name was: gnl|Prokka|IBKAMOEM_127); c00128_gnlPro.. (original name was: gnl|Prokka|IBKAMOEM_128); c00129_gnlPro.. (original name was: gnl|Prokka|IBKAMOEM_129); c00130_gnlPro.. (original name was: gnl|Prokka|IBKAMOEM_130); c00131_gnlPro.. (original name was: gnl|Prokka|IBKAMOEM_131); c00132_gnlPro.. (original name was: gnl|Prokka|IBKAMOEM_132); c00133_gnlPro.. (original name was: gnl|Prokka|IBKAMOEM_133); c00134_gnlPro.. (original name was: gnl|Prokka|IBKAMOEM_134); c00135_gnlPro.. (original name was: gnl|Prokka|IBKAMOEM_135); c00136_gnlPro.. (original name was: gnl|Prokka|IBKAMOEM_136); c00137_gnlPro.. (original name was: gnl|Prokka|IBKAMOEM_137); c00138_gnlPro.. (original name was: gnl|Prokka|IBKAMOEM_138); c00139_gnlPro.. (original name was: gnl|Prokka|IBKAMOEM_139); c00140_gnlPro.. (original name was: gnl|Prokka|IBKAMOEM_140); c00141_gnlPro.. (original name was: gnl|Prokka|IBKAMOEM_141)

Compact view

c00001_gnlPro.. - Region 1 - Rnf_complex

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Location: 156,473 - 181,809 nt. (total: 25,337 nt) Show pHMM detection rules used

Rnf_complex: (Complex1_51K and minimum(5, [FMN_bind, FeS, Fer4, Fer4_9, NQR2_RnfD_RnfE, Rnf-Nqr, RnfC_N, SLBB]))

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core biosynthetic genes

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transport-related genes

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c00002_gnlPro.. - Region 1 - succinate2propionate

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Location: 3,657 - 28,300 nt. (total: 24,644 nt) Show pHMM detection rules used

succinate2propionate: (minimum(4, [AcetylCoA_hyd_C, AcetylCoA_hydro, B12-binding, Biotin_lipoyl, Glyoxalase_4, HMGL-like, MM_CoA_mutase, MeaB, OAD_beta, OAD_gamma, PYC_OADA]) and minimum(1, [CT_Btheta, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, CT_Vparvula]) and not Cytidylate_kin)

Legend:

core biosynthetic genes

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transport-related genes

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resistance genes

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c00002_gnlPro.. - Region 2 - TPP_AA_metabolism

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Location: 64,606 - 90,593 nt. (total: 25,988 nt) Show pHMM detection rules used

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

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KnownClusterBlast

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No matches found.

c00003_gnlPro.. - Region 1 - Pyruvate2acetate-formate

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Location: 100,847 - 123,872 nt. (total: 23,026 nt) Show pHMM detection rules used

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

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core biosynthetic genes

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c00004_gnlPro.. - Region 1 - fatty_acids-unassigned

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Location: 115,581 - 144,049 nt. (total: 28,469 nt) Show pHMM detection rules used

fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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c00012_gnlPro.. - Region 1 - PFOR_II_pathway

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Location: 46,191 - 69,736 nt. (total: 23,546 nt) Show pHMM detection rules used

PFOR_II_pathway: cds(POR and POR_N and PFOR_II and EKR and Fer4_16 and TPP_enzyme_C)

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c00013_gnlPro.. - Region 1 - porA

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Location: 58,275 - 81,112 nt. (total: 22,838 nt) Show pHMM detection rules used

porA: (Fer4_7 and TPP_enzyme_C and POR and POR_N and PFOR_II and not (EKR or Fer4_16))

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core biosynthetic genes

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c00020_gnlPro.. - Region 1 - TPP_fatty_acids

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Location: 27,939 - 52,006 nt. (total: 24,068 nt) Show pHMM detection rules used

TPP_fatty_acids: (TPP_enzyme_C and (minimum(2, [ACD1_car, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, Butyrate_kinase, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_2_CAF, CoA_trans_6_Glutaconate, E1_dh, ECH_1, ECH_2, HBT, HBT_2, HCDH, HpaB, Ketoacyl-synt_C, Thiolase_C, Thiolase_N, adh_short, adh_short_C2]) or FA_synthesis) and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and not (POR or POR_N))

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core biosynthetic genes

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regulatory genes

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c00037_gnlPro.. - Region 1 - NADH_dehydrogenase_I

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Location: 1 - 23,479 nt. (total: 23,479 nt) Show pHMM detection rules used

Region on contig edge.

NADH_dehydrogenase_I: (Oxidored_q4 and Oxidored_q6 and Complex1_30kDa and Complex1_49kDa and NADHdh and Oxidored_q3 and Oxidored_q2 and minimum(4, [Fe-2S_thioredx, Fer2_4, Fer4_7, Molybdop_Fe4S4, Molydop_binding, NADH-G_4Fe-4S_3, NADH_4Fe-4S, Proton_antipo_M, Proton_antipo_N, SLBB]))

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c00093_gnlPro.. - Region 1 - Fumarate2succinate

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Location: 1 - 9,560 nt. (total: 9,560 nt) Show pHMM detection rules used

Region on contig edge.

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

Legend:

core biosynthetic genes

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