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Overview
1.1
3.1

### Identified primary metabolite regions

c00001_gnlPro.. (original name was: gnl|Prokka|PJCJNDFB_1)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 1.1 | Pyruvate2acetate-formate | SCFA | 181,308 | 204,371 | Pyruvate to acetate and formate C. acetobutylicum | PFL_acetate | 100%

c00003_gnlPro.. (original name was: gnl|Prokka|PJCJNDFB_3)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 3.1 | Glycine_cleavage | Other | 187,062 | 201,816 | Glycine cleavage C. sticklandii | GLY | 60%

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 1.1 | Pyruvate2acetate-formate | SCFA | 181,308 | 204,371 | Pyruvate to acetate and formate C. acetobutylicum | PFL_acetate | 100%
Region 3.1 | Glycine_cleavage | Other | 187,062 | 201,816 | Glycine cleavage C. sticklandii | GLY | 60%

No primary metabolite regions were found in these records:
  c00002_gnlPro.. (original name was: gnl|Prokka|PJCJNDFB_2)
  c00004_gnlPro.. (original name was: gnl|Prokka|PJCJNDFB_4)
  c00005_gnlPro.. (original name was: gnl|Prokka|PJCJNDFB_5)
  c00006_gnlPro.. (original name was: gnl|Prokka|PJCJNDFB_6)
  c00007_gnlPro.. (original name was: gnl|Prokka|PJCJNDFB_7)
  c00008_gnlPro.. (original name was: gnl|Prokka|PJCJNDFB_8)
  c00009_gnlPro.. (original name was: gnl|Prokka|PJCJNDFB_9)
  c00010_gnlPro.. (original name was: gnl|Prokka|PJCJNDFB_10)
  c00011_gnlPro.. (original name was: gnl|Prokka|PJCJNDFB_11)
  c00012_gnlPro.. (original name was: gnl|Prokka|PJCJNDFB_12)
  c00013_gnlPro.. (original name was: gnl|Prokka|PJCJNDFB_13)
  c00014_gnlPro.. (original name was: gnl|Prokka|PJCJNDFB_14)

Compact view
c00001_gnlPro.. - Region 1 - Pyruvate2acetate-formate
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 181,308 - 204,371 nt. (total: 23,064 nt) Show pHMM detection rules used
Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
c00003_gnlPro.. - Region 1 - Glycine_cleavage
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 187,062 - 201,816 nt. (total: 14,755 nt) Show pHMM detection rules used
Region on contig edge.
Glycine_cleavage: (minimum(2, [Aminotran_5, GCV_H, GCV_T, GDC-P, SoxG]) and GCV_H and GCV_T_C)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.