GCA_949486895.1 - 3 region(s)

Identified primary metabolite regions

c00002_gnlPro.. (original name was: gnl|Prokka|JNFNKFGB_2)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 2.1	Pyruvate2acetate-formate	SCFA	118,692	141,667	Pyruvate to acetate-formate E. coli	PFL_acetate	100%

c00006_gnlPro.. (original name was: gnl|Prokka|JNFNKFGB_6)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 6.1	Fumarate2succinate	SCFA	71,506	94,976	Fumarate to succinate B. thetaiotaomicron	SUC	100%

c00035_gnlPro.. (original name was: gnl|Prokka|JNFNKFGB_35)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 35.1	succinate2propionate	SCFA	1	23,343	Succinate to propionate B. theta	PRO	50%

Compact view

c00002_gnlPro.. - Region 1 - Pyruvate2acetate-formate

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Location: 118,692 - 141,667 nt. (total: 22,976 nt) Show pHMM detection rules used

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

c00006_gnlPro.. - Region 1 - Fumarate2succinate

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Location: 71,506 - 94,976 nt. (total: 23,471 nt) Show pHMM detection rules used

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

c00035_gnlPro.. - Region 1 - succinate2propionate

Download region GenBank file

Location: 1 - 23,343 nt. (total: 23,343 nt) Show pHMM detection rules used

Region on contig edge.

succinate2propionate: (minimum(4, [AcetylCoA_hyd_C, AcetylCoA_hydro, B12-binding, Biotin_lipoyl, Glyoxalase_4, HMGL-like, MM_CoA_mutase, MeaB, OAD_beta, OAD_gamma, PYC_OADA]) and minimum(1, [CT_Btheta, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, CT_Vparvula]) and not Cytidylate_kin)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters