GCA_949499915.1 - 5 region(s)

Identified primary metabolite regions

c00003_gnlPro.. (original name was: gnl|Prokka|EOCGEBDG_3)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 3.1	Glycine_cleavage	Other	49,307	73,785	Glycine cleavage C. sticklandii	GLY	60%

c00004_gnlPro.. (original name was: gnl|Prokka|EOCGEBDG_4)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 4.1	PFOR_II_pathway	SCFA	38,717	62,295	PFOR II pathway B. thetaiotaomicron	PFORII	100%

c00006_gnlPro.. (original name was: gnl|Prokka|EOCGEBDG_6)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 6.1	Pyruvate2acetate-formate	SCFA	34,991	58,054	Pyruvate to acetate and formate C. acetobutylicum	PFL_acetate	100%

c00008_gnlPro.. (original name was: gnl|Prokka|EOCGEBDG_8)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 8.1	Fumarate2succinate	SCFA	59,838	73,526	Fumarate to succinate B. thetaiotaomicron	SUC	66%

c00031_gnlPro.. (original name was: gnl|Prokka|EOCGEBDG_31)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 31.1	TPP_fatty_acids,succinate2propionate	SCFA	3,862	31,417	Succinate to propionate A. sp. KLE1797	SUC	100%

No primary metabolite regions were found in these records:: c00001_gnlPro.. (original name was: gnl|Prokka|EOCGEBDG_1); c00002_gnlPro.. (original name was: gnl|Prokka|EOCGEBDG_2); c00005_gnlPro.. (original name was: gnl|Prokka|EOCGEBDG_5); c00007_gnlPro.. (original name was: gnl|Prokka|EOCGEBDG_7); c00009_gnlPro.. (original name was: gnl|Prokka|EOCGEBDG_9); c00010_gnlPro.. (original name was: gnl|Prokka|EOCGEBDG_10); c00011_gnlPro.. (original name was: gnl|Prokka|EOCGEBDG_11); c00012_gnlPro.. (original name was: gnl|Prokka|EOCGEBDG_12); c00013_gnlPro.. (original name was: gnl|Prokka|EOCGEBDG_13); c00014_gnlPro.. (original name was: gnl|Prokka|EOCGEBDG_14); c00015_gnlPro.. (original name was: gnl|Prokka|EOCGEBDG_15); c00016_gnlPro.. (original name was: gnl|Prokka|EOCGEBDG_16); c00017_gnlPro.. (original name was: gnl|Prokka|EOCGEBDG_17); c00018_gnlPro.. (original name was: gnl|Prokka|EOCGEBDG_18); c00019_gnlPro.. (original name was: gnl|Prokka|EOCGEBDG_19); c00020_gnlPro.. (original name was: gnl|Prokka|EOCGEBDG_20); c00021_gnlPro.. (original name was: gnl|Prokka|EOCGEBDG_21); c00022_gnlPro.. (original name was: gnl|Prokka|EOCGEBDG_22); c00023_gnlPro.. (original name was: gnl|Prokka|EOCGEBDG_23); c00024_gnlPro.. (original name was: gnl|Prokka|EOCGEBDG_24); c00025_gnlPro.. (original name was: gnl|Prokka|EOCGEBDG_25); c00026_gnlPro.. (original name was: gnl|Prokka|EOCGEBDG_26); c00027_gnlPro.. (original name was: gnl|Prokka|EOCGEBDG_27); c00028_gnlPro.. (original name was: gnl|Prokka|EOCGEBDG_28); c00029_gnlPro.. (original name was: gnl|Prokka|EOCGEBDG_29); c00030_gnlPro.. (original name was: gnl|Prokka|EOCGEBDG_30); c00032_gnlPro.. (original name was: gnl|Prokka|EOCGEBDG_32); c00033_gnlPro.. (original name was: gnl|Prokka|EOCGEBDG_33); c00034_gnlPro.. (original name was: gnl|Prokka|EOCGEBDG_34); c00035_gnlPro.. (original name was: gnl|Prokka|EOCGEBDG_35); c00036_gnlPro.. (original name was: gnl|Prokka|EOCGEBDG_36); c00037_gnlPro.. (original name was: gnl|Prokka|EOCGEBDG_37); c00038_gnlPro.. (original name was: gnl|Prokka|EOCGEBDG_38); c00039_gnlPro.. (original name was: gnl|Prokka|EOCGEBDG_39); c00040_gnlPro.. (original name was: gnl|Prokka|EOCGEBDG_40); c00041_gnlPro.. (original name was: gnl|Prokka|EOCGEBDG_41); c00042_gnlPro.. (original name was: gnl|Prokka|EOCGEBDG_42); c00043_gnlPro.. (original name was: gnl|Prokka|EOCGEBDG_43); c00044_gnlPro.. (original name was: gnl|Prokka|EOCGEBDG_44); c00045_gnlPro.. (original name was: gnl|Prokka|EOCGEBDG_45); c00046_gnlPro.. (original name was: gnl|Prokka|EOCGEBDG_46); c00047_gnlPro.. (original name was: gnl|Prokka|EOCGEBDG_47); c00048_gnlPro.. (original name was: gnl|Prokka|EOCGEBDG_48); c00049_gnlPro.. (original name was: gnl|Prokka|EOCGEBDG_49); c00050_gnlPro.. (original name was: gnl|Prokka|EOCGEBDG_50); c00051_gnlPro.. (original name was: gnl|Prokka|EOCGEBDG_51); c00052_gnlPro.. (original name was: gnl|Prokka|EOCGEBDG_52); c00053_gnlPro.. (original name was: gnl|Prokka|EOCGEBDG_53); c00054_gnlPro.. (original name was: gnl|Prokka|EOCGEBDG_54); c00055_gnlPro.. (original name was: gnl|Prokka|EOCGEBDG_55); c00056_gnlPro.. (original name was: gnl|Prokka|EOCGEBDG_56); c00057_gnlPro.. (original name was: gnl|Prokka|EOCGEBDG_57); c00058_gnlPro.. (original name was: gnl|Prokka|EOCGEBDG_58); c00059_gnlPro.. (original name was: gnl|Prokka|EOCGEBDG_59); c00060_gnlPro.. (original name was: gnl|Prokka|EOCGEBDG_60); c00061_gnlPro.. (original name was: gnl|Prokka|EOCGEBDG_61); c00062_gnlPro.. (original name was: gnl|Prokka|EOCGEBDG_62); c00063_gnlPro.. (original name was: gnl|Prokka|EOCGEBDG_63); c00064_gnlPro.. (original name was: gnl|Prokka|EOCGEBDG_64); c00065_gnlPro.. (original name was: gnl|Prokka|EOCGEBDG_65); c00066_gnlPro.. (original name was: gnl|Prokka|EOCGEBDG_66); c00067_gnlPro.. (original name was: gnl|Prokka|EOCGEBDG_67); c00068_gnlPro.. (original name was: gnl|Prokka|EOCGEBDG_68); c00069_gnlPro.. (original name was: gnl|Prokka|EOCGEBDG_69); c00070_gnlPro.. (original name was: gnl|Prokka|EOCGEBDG_70); c00071_gnlPro.. (original name was: gnl|Prokka|EOCGEBDG_71); c00072_gnlPro.. (original name was: gnl|Prokka|EOCGEBDG_72); c00073_gnlPro.. (original name was: gnl|Prokka|EOCGEBDG_73); c00074_gnlPro.. (original name was: gnl|Prokka|EOCGEBDG_74); c00075_gnlPro.. (original name was: gnl|Prokka|EOCGEBDG_75); c00076_gnlPro.. (original name was: gnl|Prokka|EOCGEBDG_76); c00077_gnlPro.. (original name was: gnl|Prokka|EOCGEBDG_77); c00078_gnlPro.. (original name was: gnl|Prokka|EOCGEBDG_78); c00079_gnlPro.. (original name was: gnl|Prokka|EOCGEBDG_79); c00080_gnlPro.. (original name was: gnl|Prokka|EOCGEBDG_80); c00081_gnlPro.. (original name was: gnl|Prokka|EOCGEBDG_81); c00082_gnlPro.. (original name was: gnl|Prokka|EOCGEBDG_82)

Compact view

c00003_gnlPro.. - Region 1 - Glycine_cleavage

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Location: 49,307 - 73,785 nt. (total: 24,479 nt) Show pHMM detection rules used

Glycine_cleavage: (minimum(2, [Aminotran_5, GCV_H, GCV_T, GDC-P, SoxG]) and GCV_H and GCV_T_C)

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

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Similar known gene clusters

c00004_gnlPro.. - Region 1 - PFOR_II_pathway

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Location: 38,717 - 62,295 nt. (total: 23,579 nt) Show pHMM detection rules used

PFOR_II_pathway: cds(POR and POR_N and PFOR_II and EKR and Fer4_16 and TPP_enzyme_C)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

c00006_gnlPro.. - Region 1 - Pyruvate2acetate-formate

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Location: 34,991 - 58,054 nt. (total: 23,064 nt) Show pHMM detection rules used

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

c00008_gnlPro.. - Region 1 - Fumarate2succinate

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Location: 59,838 - 73,526 nt. (total: 13,689 nt) Show pHMM detection rules used

Region on contig edge.

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

c00031_gnlPro.. - Region 1 - TPP_fatty_acids,succinate2propionate

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Location: 3,862 - 31,417 nt. (total: 27,556 nt) Show pHMM detection rules used

Region on contig edge.

TPP_fatty_acids: (TPP_enzyme_C and (minimum(2, [ACD1_car, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, Butyrate_kinase, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_2_CAF, CoA_trans_6_Glutaconate, E1_dh, ECH_1, ECH_2, HBT, HBT_2, HCDH, HpaB, Ketoacyl-synt_C, Thiolase_C, Thiolase_N, adh_short, adh_short_C2]) or FA_synthesis) and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and not (POR or POR_N))
succinate2propionate: (minimum(4, [AcetylCoA_hyd_C, AcetylCoA_hydro, B12-binding, Biotin_lipoyl, Glyoxalase_4, HMGL-like, MM_CoA_mutase, MeaB, OAD_beta, OAD_gamma, PYC_OADA]) and minimum(1, [CT_Btheta, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, CT_Vparvula]) and not Cytidylate_kin)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

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Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters