GCA_949542295.1 - 4 region(s)

Identified primary metabolite regions

c00002_gnlPro.. (original name was: gnl|Prokka|PNEOPDPM_2)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 2.1	porA	SCFA	93,032	115,877	porA C. sporogenes	POR	60%

c00004_gnlPro.. (original name was: gnl|Prokka|PNEOPDPM_4)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 4.1	TPP_AA_metabolism	Putative	115,850	141,835

c00005_gnlPro.. (original name was: gnl|Prokka|PNEOPDPM_5)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 5.1	Rnf_complex	E-MGC	5,460	30,547	Rnf complex C. sporogenes	RNF	83%

c00024_gnlPro.. (original name was: gnl|Prokka|PNEOPDPM_24)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 24.1	PFOR_II_pathway	SCFA	27,116	50,673	PFOR II pathway B. thetaiotaomicron	PFORII	100%

No primary metabolite regions were found in these records:: c00001_gnlPro.. (original name was: gnl|Prokka|PNEOPDPM_1); c00003_gnlPro.. (original name was: gnl|Prokka|PNEOPDPM_3); c00006_gnlPro.. (original name was: gnl|Prokka|PNEOPDPM_6); c00007_gnlPro.. (original name was: gnl|Prokka|PNEOPDPM_7); c00008_gnlPro.. (original name was: gnl|Prokka|PNEOPDPM_8); c00009_gnlPro.. (original name was: gnl|Prokka|PNEOPDPM_9); c00010_gnlPro.. (original name was: gnl|Prokka|PNEOPDPM_10); c00011_gnlPro.. (original name was: gnl|Prokka|PNEOPDPM_11); c00012_gnlPro.. (original name was: gnl|Prokka|PNEOPDPM_12); c00013_gnlPro.. (original name was: gnl|Prokka|PNEOPDPM_13); c00014_gnlPro.. (original name was: gnl|Prokka|PNEOPDPM_14); c00015_gnlPro.. (original name was: gnl|Prokka|PNEOPDPM_15); c00016_gnlPro.. (original name was: gnl|Prokka|PNEOPDPM_16); c00017_gnlPro.. (original name was: gnl|Prokka|PNEOPDPM_17); c00018_gnlPro.. (original name was: gnl|Prokka|PNEOPDPM_18); c00019_gnlPro.. (original name was: gnl|Prokka|PNEOPDPM_19); c00020_gnlPro.. (original name was: gnl|Prokka|PNEOPDPM_20); c00021_gnlPro.. (original name was: gnl|Prokka|PNEOPDPM_21); c00022_gnlPro.. (original name was: gnl|Prokka|PNEOPDPM_22); c00023_gnlPro.. (original name was: gnl|Prokka|PNEOPDPM_23); c00025_gnlPro.. (original name was: gnl|Prokka|PNEOPDPM_25); c00026_gnlPro.. (original name was: gnl|Prokka|PNEOPDPM_26); c00027_gnlPro.. (original name was: gnl|Prokka|PNEOPDPM_27); c00028_gnlPro.. (original name was: gnl|Prokka|PNEOPDPM_28); c00029_gnlPro.. (original name was: gnl|Prokka|PNEOPDPM_29); c00030_gnlPro.. (original name was: gnl|Prokka|PNEOPDPM_30); c00031_gnlPro.. (original name was: gnl|Prokka|PNEOPDPM_31); c00032_gnlPro.. (original name was: gnl|Prokka|PNEOPDPM_32); c00033_gnlPro.. (original name was: gnl|Prokka|PNEOPDPM_33); c00034_gnlPro.. (original name was: gnl|Prokka|PNEOPDPM_34); c00035_gnlPro.. (original name was: gnl|Prokka|PNEOPDPM_35); c00036_gnlPro.. (original name was: gnl|Prokka|PNEOPDPM_36); c00037_gnlPro.. (original name was: gnl|Prokka|PNEOPDPM_37); c00038_gnlPro.. (original name was: gnl|Prokka|PNEOPDPM_38); c00039_gnlPro.. (original name was: gnl|Prokka|PNEOPDPM_39); c00040_gnlPro.. (original name was: gnl|Prokka|PNEOPDPM_40); c00041_gnlPro.. (original name was: gnl|Prokka|PNEOPDPM_41); c00042_gnlPro.. (original name was: gnl|Prokka|PNEOPDPM_42); c00043_gnlPro.. (original name was: gnl|Prokka|PNEOPDPM_43); c00044_gnlPro.. (original name was: gnl|Prokka|PNEOPDPM_44); c00045_gnlPro.. (original name was: gnl|Prokka|PNEOPDPM_45); c00046_gnlPro.. (original name was: gnl|Prokka|PNEOPDPM_46); c00047_gnlPro.. (original name was: gnl|Prokka|PNEOPDPM_47); c00048_gnlPro.. (original name was: gnl|Prokka|PNEOPDPM_48); c00049_gnlPro.. (original name was: gnl|Prokka|PNEOPDPM_49); c00050_gnlPro.. (original name was: gnl|Prokka|PNEOPDPM_50); c00051_gnlPro.. (original name was: gnl|Prokka|PNEOPDPM_51); c00052_gnlPro.. (original name was: gnl|Prokka|PNEOPDPM_52); c00053_gnlPro.. (original name was: gnl|Prokka|PNEOPDPM_53); c00054_gnlPro.. (original name was: gnl|Prokka|PNEOPDPM_54); c00055_gnlPro.. (original name was: gnl|Prokka|PNEOPDPM_55); c00056_gnlPro.. (original name was: gnl|Prokka|PNEOPDPM_56); c00057_gnlPro.. (original name was: gnl|Prokka|PNEOPDPM_57); c00058_gnlPro.. (original name was: gnl|Prokka|PNEOPDPM_58); c00059_gnlPro.. (original name was: gnl|Prokka|PNEOPDPM_59); c00060_gnlPro.. (original name was: gnl|Prokka|PNEOPDPM_60); c00061_gnlPro.. (original name was: gnl|Prokka|PNEOPDPM_61); c00062_gnlPro.. (original name was: gnl|Prokka|PNEOPDPM_62); c00063_gnlPro.. (original name was: gnl|Prokka|PNEOPDPM_63); c00064_gnlPro.. (original name was: gnl|Prokka|PNEOPDPM_64); c00065_gnlPro.. (original name was: gnl|Prokka|PNEOPDPM_65); c00066_gnlPro.. (original name was: gnl|Prokka|PNEOPDPM_66); c00067_gnlPro.. (original name was: gnl|Prokka|PNEOPDPM_67); c00068_gnlPro.. (original name was: gnl|Prokka|PNEOPDPM_68); c00069_gnlPro.. (original name was: gnl|Prokka|PNEOPDPM_69); c00070_gnlPro.. (original name was: gnl|Prokka|PNEOPDPM_70); c00071_gnlPro.. (original name was: gnl|Prokka|PNEOPDPM_71); c00072_gnlPro.. (original name was: gnl|Prokka|PNEOPDPM_72); c00073_gnlPro.. (original name was: gnl|Prokka|PNEOPDPM_73); c00074_gnlPro.. (original name was: gnl|Prokka|PNEOPDPM_74); c00075_gnlPro.. (original name was: gnl|Prokka|PNEOPDPM_75); c00076_gnlPro.. (original name was: gnl|Prokka|PNEOPDPM_76); c00077_gnlPro.. (original name was: gnl|Prokka|PNEOPDPM_77); c00078_gnlPro.. (original name was: gnl|Prokka|PNEOPDPM_78); c00079_gnlPro.. (original name was: gnl|Prokka|PNEOPDPM_79); c00080_gnlPro.. (original name was: gnl|Prokka|PNEOPDPM_80); c00081_gnlPro.. (original name was: gnl|Prokka|PNEOPDPM_81); c00082_gnlPro.. (original name was: gnl|Prokka|PNEOPDPM_82); c00083_gnlPro.. (original name was: gnl|Prokka|PNEOPDPM_83); c00084_gnlPro.. (original name was: gnl|Prokka|PNEOPDPM_84); c00085_gnlPro.. (original name was: gnl|Prokka|PNEOPDPM_85); c00086_gnlPro.. (original name was: gnl|Prokka|PNEOPDPM_86); c00087_gnlPro.. (original name was: gnl|Prokka|PNEOPDPM_87); c00088_gnlPro.. (original name was: gnl|Prokka|PNEOPDPM_88); c00089_gnlPro.. (original name was: gnl|Prokka|PNEOPDPM_89); c00090_gnlPro.. (original name was: gnl|Prokka|PNEOPDPM_90); c00091_gnlPro.. (original name was: gnl|Prokka|PNEOPDPM_91); c00092_gnlPro.. (original name was: gnl|Prokka|PNEOPDPM_92); c00093_gnlPro.. (original name was: gnl|Prokka|PNEOPDPM_93); c00094_gnlPro.. (original name was: gnl|Prokka|PNEOPDPM_94); c00095_gnlPro.. (original name was: gnl|Prokka|PNEOPDPM_95); c00096_gnlPro.. (original name was: gnl|Prokka|PNEOPDPM_96)

Compact view

c00002_gnlPro.. - Region 1 - porA

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Location: 93,032 - 115,877 nt. (total: 22,846 nt) Show pHMM detection rules used

porA: (Fer4_7 and TPP_enzyme_C and POR and POR_N and PFOR_II and not (EKR or Fer4_16))

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

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c00004_gnlPro.. - Region 1 - TPP_AA_metabolism

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Location: 115,850 - 141,835 nt. (total: 25,986 nt) Show pHMM detection rules used

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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KnownClusterBlast

Similar known gene clusters

No matches found.

c00005_gnlPro.. - Region 1 - Rnf_complex

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Location: 5,460 - 30,547 nt. (total: 25,088 nt) Show pHMM detection rules used

Rnf_complex: (Complex1_51K and minimum(5, [FMN_bind, FeS, Fer4, Fer4_9, NQR2_RnfD_RnfE, Rnf-Nqr, RnfC_N, SLBB]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

c00024_gnlPro.. - Region 1 - PFOR_II_pathway

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Location: 27,116 - 50,673 nt. (total: 23,558 nt) Show pHMM detection rules used

PFOR_II_pathway: cds(POR and POR_N and PFOR_II and EKR and Fer4_16 and TPP_enzyme_C)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters