GCA_958346085.1 - 4 region(s)

Identified primary metabolite regions

c00002_gnlPro.. (original name was: gnl|Prokka|FLONLHCL_2)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 2.1	PFOR_II_pathway	SCFA	14,490	38,050	PFOR II pathway B. thetaiotaomicron	PFORII	100%

c00004_gnlPro.. (original name was: gnl|Prokka|FLONLHCL_4)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 4.1	TPP_AA_metabolism	Putative	34,842	48,509

c00015_gnlPro.. (original name was: gnl|Prokka|FLONLHCL_15)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 15.1	Pyruvate2acetate-formate	SCFA	4,500	27,492	Pyruvate to acetate-formate E. coli	PFL_acetate	100%

c00038_gnlPro.. (original name was: gnl|Prokka|FLONLHCL_38)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 38.1	Others_HGD_unassigned	Putative	2,861	19,224

No primary metabolite regions were found in these records:: c00001_gnlPro.. (original name was: gnl|Prokka|FLONLHCL_1); c00003_gnlPro.. (original name was: gnl|Prokka|FLONLHCL_3); c00005_gnlPro.. (original name was: gnl|Prokka|FLONLHCL_5); c00006_gnlPro.. (original name was: gnl|Prokka|FLONLHCL_6); c00007_gnlPro.. (original name was: gnl|Prokka|FLONLHCL_7); c00008_gnlPro.. (original name was: gnl|Prokka|FLONLHCL_8); c00009_gnlPro.. (original name was: gnl|Prokka|FLONLHCL_9); c00010_gnlPro.. (original name was: gnl|Prokka|FLONLHCL_10); c00011_gnlPro.. (original name was: gnl|Prokka|FLONLHCL_11); c00012_gnlPro.. (original name was: gnl|Prokka|FLONLHCL_12); c00013_gnlPro.. (original name was: gnl|Prokka|FLONLHCL_13); c00014_gnlPro.. (original name was: gnl|Prokka|FLONLHCL_14); c00016_gnlPro.. (original name was: gnl|Prokka|FLONLHCL_16); c00017_gnlPro.. (original name was: gnl|Prokka|FLONLHCL_17); c00018_gnlPro.. (original name was: gnl|Prokka|FLONLHCL_18); c00019_gnlPro.. (original name was: gnl|Prokka|FLONLHCL_19); c00020_gnlPro.. (original name was: gnl|Prokka|FLONLHCL_20); c00021_gnlPro.. (original name was: gnl|Prokka|FLONLHCL_21); c00022_gnlPro.. (original name was: gnl|Prokka|FLONLHCL_22); c00023_gnlPro.. (original name was: gnl|Prokka|FLONLHCL_23); c00024_gnlPro.. (original name was: gnl|Prokka|FLONLHCL_24); c00025_gnlPro.. (original name was: gnl|Prokka|FLONLHCL_25); c00026_gnlPro.. (original name was: gnl|Prokka|FLONLHCL_26); c00027_gnlPro.. (original name was: gnl|Prokka|FLONLHCL_27); c00028_gnlPro.. (original name was: gnl|Prokka|FLONLHCL_28); c00029_gnlPro.. (original name was: gnl|Prokka|FLONLHCL_29); c00030_gnlPro.. (original name was: gnl|Prokka|FLONLHCL_30); c00031_gnlPro.. (original name was: gnl|Prokka|FLONLHCL_31); c00032_gnlPro.. (original name was: gnl|Prokka|FLONLHCL_32); c00033_gnlPro.. (original name was: gnl|Prokka|FLONLHCL_33); c00034_gnlPro.. (original name was: gnl|Prokka|FLONLHCL_34); c00035_gnlPro.. (original name was: gnl|Prokka|FLONLHCL_35); c00036_gnlPro.. (original name was: gnl|Prokka|FLONLHCL_36); c00037_gnlPro.. (original name was: gnl|Prokka|FLONLHCL_37); c00039_gnlPro.. (original name was: gnl|Prokka|FLONLHCL_39); c00040_gnlPro.. (original name was: gnl|Prokka|FLONLHCL_40); c00041_gnlPro.. (original name was: gnl|Prokka|FLONLHCL_41); c00042_gnlPro.. (original name was: gnl|Prokka|FLONLHCL_42); c00043_gnlPro.. (original name was: gnl|Prokka|FLONLHCL_43); c00044_gnlPro.. (original name was: gnl|Prokka|FLONLHCL_44); c00045_gnlPro.. (original name was: gnl|Prokka|FLONLHCL_45); c00046_gnlPro.. (original name was: gnl|Prokka|FLONLHCL_46); c00047_gnlPro.. (original name was: gnl|Prokka|FLONLHCL_47); c00048_gnlPro.. (original name was: gnl|Prokka|FLONLHCL_48); c00049_gnlPro.. (original name was: gnl|Prokka|FLONLHCL_49); c00050_gnlPro.. (original name was: gnl|Prokka|FLONLHCL_50); c00051_gnlPro.. (original name was: gnl|Prokka|FLONLHCL_51); c00052_gnlPro.. (original name was: gnl|Prokka|FLONLHCL_52); c00053_gnlPro.. (original name was: gnl|Prokka|FLONLHCL_53); c00054_gnlPro.. (original name was: gnl|Prokka|FLONLHCL_54); c00055_gnlPro.. (original name was: gnl|Prokka|FLONLHCL_55); c00056_gnlPro.. (original name was: gnl|Prokka|FLONLHCL_56); c00057_gnlPro.. (original name was: gnl|Prokka|FLONLHCL_57); c00058_gnlPro.. (original name was: gnl|Prokka|FLONLHCL_58); c00059_gnlPro.. (original name was: gnl|Prokka|FLONLHCL_59); c00060_gnlPro.. (original name was: gnl|Prokka|FLONLHCL_60); c00061_gnlPro.. (original name was: gnl|Prokka|FLONLHCL_61); c00062_gnlPro.. (original name was: gnl|Prokka|FLONLHCL_62); c00063_gnlPro.. (original name was: gnl|Prokka|FLONLHCL_63); c00064_gnlPro.. (original name was: gnl|Prokka|FLONLHCL_64); c00065_gnlPro.. (original name was: gnl|Prokka|FLONLHCL_65); c00066_gnlPro.. (original name was: gnl|Prokka|FLONLHCL_66); c00067_gnlPro.. (original name was: gnl|Prokka|FLONLHCL_67); c00068_gnlPro.. (original name was: gnl|Prokka|FLONLHCL_68); c00069_gnlPro.. (original name was: gnl|Prokka|FLONLHCL_69); c00070_gnlPro.. (original name was: gnl|Prokka|FLONLHCL_70); c00071_gnlPro.. (original name was: gnl|Prokka|FLONLHCL_71); c00072_gnlPro.. (original name was: gnl|Prokka|FLONLHCL_72); c00073_gnlPro.. (original name was: gnl|Prokka|FLONLHCL_73); c00074_gnlPro.. (original name was: gnl|Prokka|FLONLHCL_74); c00075_gnlPro.. (original name was: gnl|Prokka|FLONLHCL_75); c00076_gnlPro.. (original name was: gnl|Prokka|FLONLHCL_76); c00077_gnlPro.. (original name was: gnl|Prokka|FLONLHCL_77); c00078_gnlPro.. (original name was: gnl|Prokka|FLONLHCL_78); c00079_gnlPro.. (original name was: gnl|Prokka|FLONLHCL_79); c00080_gnlPro.. (original name was: gnl|Prokka|FLONLHCL_80); c00081_gnlPro.. (original name was: gnl|Prokka|FLONLHCL_81); c00082_gnlPro.. (original name was: gnl|Prokka|FLONLHCL_82); c00083_gnlPro.. (original name was: gnl|Prokka|FLONLHCL_83); c00084_gnlPro.. (original name was: gnl|Prokka|FLONLHCL_84); c00085_gnlPro.. (original name was: gnl|Prokka|FLONLHCL_85); c00086_gnlPro.. (original name was: gnl|Prokka|FLONLHCL_86); c00087_gnlPro.. (original name was: gnl|Prokka|FLONLHCL_87); c00088_gnlPro.. (original name was: gnl|Prokka|FLONLHCL_88); c00089_gnlPro.. (original name was: gnl|Prokka|FLONLHCL_89); c00090_gnlPro.. (original name was: gnl|Prokka|FLONLHCL_90); c00091_gnlPro.. (original name was: gnl|Prokka|FLONLHCL_91); c00092_gnlPro.. (original name was: gnl|Prokka|FLONLHCL_92); c00093_gnlPro.. (original name was: gnl|Prokka|FLONLHCL_93); c00094_gnlPro.. (original name was: gnl|Prokka|FLONLHCL_94); c00095_gnlPro.. (original name was: gnl|Prokka|FLONLHCL_95); c00096_gnlPro.. (original name was: gnl|Prokka|FLONLHCL_96); c00097_gnlPro.. (original name was: gnl|Prokka|FLONLHCL_97); c00098_gnlPro.. (original name was: gnl|Prokka|FLONLHCL_98); c00099_gnlPro.. (original name was: gnl|Prokka|FLONLHCL_99); c00100_gnlPro.. (original name was: gnl|Prokka|FLONLHCL_100); c00101_gnlPro.. (original name was: gnl|Prokka|FLONLHCL_101); c00102_gnlPro.. (original name was: gnl|Prokka|FLONLHCL_102); c00103_gnlPro.. (original name was: gnl|Prokka|FLONLHCL_103)

Compact view

c00002_gnlPro.. - Region 1 - PFOR_II_pathway

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Location: 14,490 - 38,050 nt. (total: 23,561 nt) Show pHMM detection rules used

PFOR_II_pathway: cds(POR and POR_N and PFOR_II and EKR and Fer4_16 and TPP_enzyme_C)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

c00004_gnlPro.. - Region 1 - TPP_AA_metabolism

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Location: 34,842 - 48,509 nt. (total: 13,668 nt) Show pHMM detection rules used

Region on contig edge.

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.

c00015_gnlPro.. - Region 1 - Pyruvate2acetate-formate

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Location: 4,500 - 27,492 nt. (total: 22,993 nt) Show pHMM detection rules used

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

c00038_gnlPro.. - Region 1 - Others_HGD_unassigned

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Location: 2,861 - 19,224 nt. (total: 16,364 nt) Show pHMM detection rules used

Region on contig edge.

Others_HGD_unassigned: (minimum(1, [HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Lactoyl-CoA1, Lactoyl-CoA2]) and minimum(1, [ACP_syn_III, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AdoHcyase_NAD, AlaDh_PNT_C, BcrAD_BadFG, Biotin_lipoyl, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_6_Glutaconate, CoA_transf_3, ECH_1, ECH_2, ETF, ETF_alpha, FGGY_C, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, Mal_decarbox_Al, Peptidase_M22, Peptidase_M23, Thiolase_C, Thiolase_N, ketoacyl-synt]) and not (minimum(2, [AcetylCoA_hyd_C, BcrAD_BadFG, CoA_trans, CoA_trans_230_acto, Mal_decarbox_Al]) and Lactoyl-CoA2 and Lactoyl-CoA1) and not (minimum(4, [ACP_syn_III, ACP_syn_III_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AlaDh_PNT_C, BcrAD_BadFG, ECH_1, ECH_2, ETF, ETF_alpha, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, IlvN, NAD_Gly3P_dh_N, Thiolase_C, Thiolase_N, ketoacyl-synt]) and HAAA1 and not HleuS1))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

No matches found.